HEADER HYDROLASE 16-DEC-02 1NFU TITLE CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR XA COMPLEXED WITH TITLE 2 RPR132747 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XA, HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIVATED FACTOR XA, HEAVY CHAIN; COMPND 5 EC: 3.4.21.6; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COAGULATION FACTOR XA, LIGHT CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: FACTOR X LIGHT CHAIN; COMPND 10 EC: 3.4.21.6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: BLOOD; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 OTHER_DETAILS: BLOOD KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MAIGNAN,J.P.GUILLOTEAU REVDAT 3 16-AUG-23 1NFU 1 REMARK LINK REVDAT 2 24-FEB-09 1NFU 1 VERSN REVDAT 1 25-FEB-03 1NFU 0 JRNL AUTH S.MAIGNAN,J.P.GUILLOTEAU,Y.M.CHOI-SLEDESKI,M.R.BECKER, JRNL AUTH 2 W.R.EWING,H.W.PAULS,A.P.SPADA,V.MIKOL JRNL TITL MOLECULAR STRUCTURES OF HUMAN FACTOR XA COMPLEXED WITH JRNL TITL 2 KETOPIPERAZINE INHIBITORS: PREFERENCE FOR A NEUTRAL GROUP IN JRNL TITL 3 THE S1 POCKET. JRNL REF J.MED.CHEM. V. 46 685 2003 JRNL REFN ISSN 0022-2623 JRNL PMID 12593649 JRNL DOI 10.1021/JM0203837 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 0 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 REFINEMENT OF THE STRUCTURE WAS PERFORMED WITHOUT R-FREE REMARK 3 CALCULATION REMARK 4 REMARK 4 1NFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18808 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FOS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 600, 50MM MES-NAOH,1MM REMARK 280 RPR132747, PH 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.88622 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.52569 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.91954 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.52569 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.88622 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.91954 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 245 REMARK 465 GLY A 246 REMARK 465 LEU A 247 REMARK 465 PRO A 248 REMARK 465 LYS A 249 REMARK 465 ALA A 250 REMARK 465 LYS A 251 REMARK 465 SER A 252 REMARK 465 HIS A 253 REMARK 465 ALA A 254 REMARK 465 PRO A 255 REMARK 465 GLU A 256 REMARK 465 VAL A 257 REMARK 465 ILE A 258 REMARK 465 THR A 259 REMARK 465 SER A 260 REMARK 465 SER A 261 REMARK 465 PRO A 262 REMARK 465 LEU A 263 REMARK 465 LYS A 264 REMARK 465 GLU B -82 REMARK 465 GLU B -81 REMARK 465 MET B -80 REMARK 465 LYS B -79 REMARK 465 LYS B -78 REMARK 465 GLY B -77 REMARK 465 HIS B -76 REMARK 465 LEU B -75 REMARK 465 GLU B -74 REMARK 465 ARG B -73 REMARK 465 GLU B -72 REMARK 465 CYS B -71 REMARK 465 MET B -70 REMARK 465 GLU B -69 REMARK 465 GLU B -68 REMARK 465 THR B -67 REMARK 465 CYS B -66 REMARK 465 SER B -65 REMARK 465 TYR B -64 REMARK 465 GLU B -63 REMARK 465 GLU B -62 REMARK 465 ALA B -61 REMARK 465 ARG B -60 REMARK 465 GLU B -59 REMARK 465 VAL B -58 REMARK 465 PHE B -57 REMARK 465 GLU B -56 REMARK 465 ASP B -55 REMARK 465 SER B -54 REMARK 465 ASP B -53 REMARK 465 LYS B -52 REMARK 465 THR B -51 REMARK 465 ASN B -50 REMARK 465 GLU B -49 REMARK 465 PHE B -48 REMARK 465 TRP B -47 REMARK 465 ASN B -46 REMARK 465 LYS B -45 REMARK 465 TYR B -44 REMARK 465 LYS B -43 REMARK 465 ASP B -42 REMARK 465 GLY B -41 REMARK 465 ASP B -40 REMARK 465 GLN B -39 REMARK 465 CYS B -38 REMARK 465 GLU B -37 REMARK 465 THR B -36 REMARK 465 SER B -35 REMARK 465 PRO B -34 REMARK 465 CYS B -33 REMARK 465 GLN B -32 REMARK 465 ASN B -31 REMARK 465 GLN B -30 REMARK 465 GLY B -29 REMARK 465 LYS B -28 REMARK 465 CYS B -27 REMARK 465 LYS B -26 REMARK 465 ASP B -25 REMARK 465 GLY B -24 REMARK 465 LEU B -23 REMARK 465 GLY B -22 REMARK 465 GLU B -21 REMARK 465 TYR B -20 REMARK 465 THR B -19 REMARK 465 CYS B -18 REMARK 465 THR B -17 REMARK 465 CYS B -16 REMARK 465 LEU B -15 REMARK 465 GLU B -14 REMARK 465 GLY B -13 REMARK 465 PHE B -12 REMARK 465 GLU B -11 REMARK 465 GLY B -10 REMARK 465 LYS B -9 REMARK 465 ASN B -8 REMARK 465 CYS B -7 REMARK 465 GLU B -6 REMARK 465 LEU B -5 REMARK 465 PHE B -4 REMARK 465 THR B -3 REMARK 465 GLU B 50 REMARK 465 ARG B 51 REMARK 465 ARG B 52 REMARK 465 LYS B 53 REMARK 465 ARG B 54 REMARK 465 SER B 55 REMARK 465 VAL B 56 REMARK 465 ALA B 57 REMARK 465 GLN B 58 REMARK 465 ALA B 59 REMARK 465 THR B 60 REMARK 465 SER B 61 REMARK 465 SER B 62 REMARK 465 SER B 63 REMARK 465 GLY B 64 REMARK 465 GLU B 65 REMARK 465 ALA B 66 REMARK 465 PRO B 67 REMARK 465 ASP B 68 REMARK 465 SER B 69 REMARK 465 ILE B 70 REMARK 465 THR B 71 REMARK 465 TRP B 72 REMARK 465 LYS B 73 REMARK 465 PRO B 74 REMARK 465 TYR B 75 REMARK 465 ASP B 76 REMARK 465 ALA B 77 REMARK 465 ALA B 78 REMARK 465 ASP B 79 REMARK 465 LEU B 80 REMARK 465 ASP B 81 REMARK 465 PRO B 82 REMARK 465 THR B 83 REMARK 465 GLU B 84 REMARK 465 ASN B 85 REMARK 465 PRO B 86 REMARK 465 PHE B 87 REMARK 465 ASP B 88 REMARK 465 LEU B 89 REMARK 465 LEU B 90 REMARK 465 ASP B 91 REMARK 465 PHE B 92 REMARK 465 ASN B 93 REMARK 465 GLN B 94 REMARK 465 THR B 95 REMARK 465 GLN B 96 REMARK 465 PRO B 97 REMARK 465 GLU B 98 REMARK 465 ARG B 99 REMARK 465 GLY B 100 REMARK 465 ASP B 101 REMARK 465 ASN B 102 REMARK 465 ASN B 103 REMARK 465 LEU B 104 REMARK 465 THR B 105 REMARK 465 ARG B 106 REMARK 465 ILE B 107 REMARK 465 VAL B 108 REMARK 465 GLY B 109 REMARK 465 GLY B 110 REMARK 465 GLN B 111 REMARK 465 GLU B 112 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 36 CD OE1 OE2 REMARK 480 GLU A 37 CG CD OE1 OE2 REMARK 480 GLU A 39 CG CD OE1 OE2 REMARK 480 LYS A 62 CB CG CD CE NZ REMARK 480 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 75 CG CD OE1 NE2 REMARK 480 GLU A 76 CG CD OE1 OE2 REMARK 480 GLU A 77 CG CD OE1 OE2 REMARK 480 LYS A 96 CD CE NZ REMARK 480 GLU A 97 CB CG CD OE1 OE2 REMARK 480 LYS A 134 CD CE NZ REMARK 480 LYS A 148 C O CB CG CD CE NZ REMARK 480 ARG A 150 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 223 CG CD CE NZ REMARK 480 LYS A 236 CD CE NZ REMARK 480 ARG A 240 CA C O CB CG CD NE REMARK 480 ARG A 240 CZ NH1 NH2 REMARK 480 LYS A 243 CG CD CE NZ REMARK 480 THR A 244 CB OG1 CG2 REMARK 480 ARG B -2 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU B 15 CG CD OE1 OE2 REMARK 480 GLN B 16 CG CD OE1 NE2 REMARK 480 ASN B 17 CB CG OD1 ND2 REMARK 480 ARG B 25 NE CZ NH1 NH2 REMARK 480 ASP B 31 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 321 O HOH A 404 3645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 59 3.84 -62.40 REMARK 500 THR A 73 18.40 -64.81 REMARK 500 GLU A 76 73.87 -117.71 REMARK 500 ARG A 115 -160.36 -160.54 REMARK 500 ARG A 143 151.27 -48.97 REMARK 500 CYS A 191 -167.28 -161.65 REMARK 500 ALA A 221 17.98 57.35 REMARK 500 LEU B 0 -126.93 47.78 REMARK 500 ASN B 5 18.58 53.51 REMARK 500 GLN B 10 -110.38 -130.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 300 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 70 OD1 REMARK 620 2 ASN A 72 O 84.8 REMARK 620 3 GLN A 75 O 130.2 77.8 REMARK 620 4 GLU A 80 OE1 99.2 149.0 76.3 REMARK 620 5 HOH A 373 O 93.7 109.8 136.1 100.7 REMARK 620 6 HOH A 407 O 61.1 80.1 70.1 75.3 152.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RRP A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EZQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH RPR128515 REMARK 900 RELATED ID: 1F0R RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH RPR208815 REMARK 900 RELATED ID: 1F0S RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH RPR208707 REMARK 900 RELATED ID: 1NFW RELATED DB: PDB REMARK 900 RELATED ID: 1NFX RELATED DB: PDB REMARK 900 RELATED ID: 1NFY RELATED DB: PDB DBREF 1NFU A 16 264 UNP P00742 FA10_HUMAN 235 488 DBREF 1NFU B -82 112 UNP P00742 FA10_HUMAN 46 240 SEQRES 1 A 254 ILE VAL GLY GLY GLN GLU CYS LYS ASP GLY GLU CYS PRO SEQRES 2 A 254 TRP GLN ALA LEU LEU ILE ASN GLU GLU ASN GLU GLY PHE SEQRES 3 A 254 CYS GLY GLY THR ILE LEU SER GLU PHE TYR ILE LEU THR SEQRES 4 A 254 ALA ALA HIS CYS LEU TYR GLN ALA LYS ARG PHE LYS VAL SEQRES 5 A 254 ARG VAL GLY ASP ARG ASN THR GLU GLN GLU GLU GLY GLY SEQRES 6 A 254 GLU ALA VAL HIS GLU VAL GLU VAL VAL ILE LYS HIS ASN SEQRES 7 A 254 ARG PHE THR LYS GLU THR TYR ASP PHE ASP ILE ALA VAL SEQRES 8 A 254 LEU ARG LEU LYS THR PRO ILE THR PHE ARG MET ASN VAL SEQRES 9 A 254 ALA PRO ALA CYS LEU PRO GLU ARG ASP TRP ALA GLU SER SEQRES 10 A 254 THR LEU MET THR GLN LYS THR GLY ILE VAL SER GLY PHE SEQRES 11 A 254 GLY ARG THR HIS GLU LYS GLY ARG GLN SER THR ARG LEU SEQRES 12 A 254 LYS MET LEU GLU VAL PRO TYR VAL ASP ARG ASN SER CYS SEQRES 13 A 254 LYS LEU SER SER SER PHE ILE ILE THR GLN ASN MET PHE SEQRES 14 A 254 CYS ALA GLY TYR ASP THR LYS GLN GLU ASP ALA CYS GLN SEQRES 15 A 254 GLY ASP SER GLY GLY PRO HIS VAL THR ARG PHE LYS ASP SEQRES 16 A 254 THR TYR PHE VAL THR GLY ILE VAL SER TRP GLY GLU GLY SEQRES 17 A 254 CYS ALA ARG LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 A 254 THR ALA PHE LEU LYS TRP ILE ASP ARG SER MET LYS THR SEQRES 19 A 254 ARG GLY LEU PRO LYS ALA LYS SER HIS ALA PRO GLU VAL SEQRES 20 A 254 ILE THR SER SER PRO LEU LYS SEQRES 1 B 195 GLU GLU MET LYS LYS GLY HIS LEU GLU ARG GLU CYS MET SEQRES 2 B 195 GLU GLU THR CYS SER TYR GLU GLU ALA ARG GLU VAL PHE SEQRES 3 B 195 GLU ASP SER ASP LYS THR ASN GLU PHE TRP ASN LYS TYR SEQRES 4 B 195 LYS ASP GLY ASP GLN CYS GLU THR SER PRO CYS GLN ASN SEQRES 5 B 195 GLN GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS SEQRES 6 B 195 THR CYS LEU GLU GLY PHE GLU GLY LYS ASN CYS GLU LEU SEQRES 7 B 195 PHE THR ARG LYS LEU CYS SER LEU ASP ASN GLY ASP CYS SEQRES 8 B 195 ASP GLN PHE CYS HIS GLU GLU GLN ASN SER VAL VAL CYS SEQRES 9 B 195 SER CYS ALA ARG GLY TYR THR LEU ALA ASP ASN GLY LYS SEQRES 10 B 195 ALA CYS ILE PRO THR GLY PRO TYR PRO CYS GLY LYS GLN SEQRES 11 B 195 THR LEU GLU ARG ARG LYS ARG SER VAL ALA GLN ALA THR SEQRES 12 B 195 SER SER SER GLY GLU ALA PRO ASP SER ILE THR TRP LYS SEQRES 13 B 195 PRO TYR ASP ALA ALA ASP LEU ASP PRO THR GLU ASN PRO SEQRES 14 B 195 PHE ASP LEU LEU ASP PHE ASN GLN THR GLN PRO GLU ARG SEQRES 15 B 195 GLY ASP ASN ASN LEU THR ARG ILE VAL GLY GLY GLN GLU HET CA A 300 1 HET RRP A 301 30 HETNAM CA CALCIUM ION HETNAM RRP 3-({4-[(6-CHLORO-1-BENZOTHIEN-2-YL)SULFONYL]-2- HETNAM 2 RRP OXOPIPERAZIN-1-YL}METHYL)BENZENECARBOXIMIDAMIDE FORMUL 3 CA CA 2+ FORMUL 4 RRP C20 H19 CL N4 O3 S2 FORMUL 5 HOH *163(H2 O) HELIX 1 1 HIS A 57 GLN A 61 5 5 HELIX 2 2 GLU A 124A LEU A 131A 1 9 HELIX 3 3 ASP A 164 SER A 172 1 9 HELIX 4 4 PHE A 234 MET A 242 1 9 HELIX 5 5 LYS B -1 CYS B 8 5 10 SHEET 1 A 7 GLN A 20 GLU A 21 0 SHEET 2 A 7 LYS A 156 PRO A 161 -1 O MET A 157 N GLN A 20 SHEET 3 A 7 THR A 135 GLY A 140 -1 N VAL A 138 O LEU A 158 SHEET 4 A 7 PRO A 198 PHE A 203 -1 O VAL A 200 N ILE A 137 SHEET 5 A 7 THR A 206 TRP A 215 -1 O PHE A 208 N THR A 201 SHEET 6 A 7 GLY A 226 LYS A 230 -1 O ILE A 227 N TRP A 215 SHEET 7 A 7 MET A 180 ALA A 183 -1 N ALA A 183 O GLY A 226 SHEET 1 B 7 GLN A 30 ASN A 35 0 SHEET 2 B 7 GLY A 40 ILE A 46 -1 O PHE A 41 N LEU A 33 SHEET 3 B 7 TYR A 51 THR A 54 -1 O LEU A 53 N THR A 45 SHEET 4 B 7 ALA A 104 LEU A 108 -1 O LEU A 106 N ILE A 52 SHEET 5 B 7 ALA A 81 LYS A 90 -1 N ILE A 89 O VAL A 105 SHEET 6 B 7 PHE A 64 VAL A 68 -1 N VAL A 66 O HIS A 83 SHEET 7 B 7 GLN A 30 ASN A 35 -1 N ILE A 34 O LYS A 65 SHEET 1 C 2 PHE B 11 GLU B 15 0 SHEET 2 C 2 SER B 18 SER B 22 -1 O VAL B 20 N HIS B 13 SHEET 1 D 2 TYR B 27 LEU B 29 0 SHEET 2 D 2 CYS B 36 PRO B 38 -1 O ILE B 37 N THR B 28 SSBOND 1 CYS A 22 CYS A 27 1555 1555 2.02 SSBOND 2 CYS A 42 CYS A 58 1555 1555 2.03 SSBOND 3 CYS A 122 CYS B 44 1555 1555 2.03 SSBOND 4 CYS A 168 CYS A 182 1555 1555 2.01 SSBOND 5 CYS A 191 CYS A 220 1555 1555 2.03 SSBOND 6 CYS B 1 CYS B 12 1555 1555 2.03 SSBOND 7 CYS B 8 CYS B 21 1555 1555 2.02 SSBOND 8 CYS B 23 CYS B 36 1555 1555 2.03 LINK OD1 ASP A 70 CA CA A 300 1555 1555 2.57 LINK O ASN A 72 CA CA A 300 1555 1555 2.50 LINK O GLN A 75 CA CA A 300 1555 1555 2.66 LINK OE1 GLU A 80 CA CA A 300 1555 1555 2.30 LINK CA CA A 300 O HOH A 373 1555 1555 2.59 LINK CA CA A 300 O HOH A 407 1555 1555 2.73 SITE 1 AC1 6 ASP A 70 ASN A 72 GLN A 75 GLU A 80 SITE 2 AC1 6 HOH A 373 HOH A 407 SITE 1 AC2 17 GLU A 97 PHE A 174 ASP A 189 ALA A 190 SITE 2 AC2 17 CYS A 191 GLN A 192 SER A 195 VAL A 213 SITE 3 AC2 17 TRP A 215 GLY A 216 GLU A 217 GLY A 219 SITE 4 AC2 17 CYS A 220 GLY A 226 ILE A 227 TYR A 228 SITE 5 AC2 17 HOH A 421 CRYST1 55.073 71.830 78.970 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012650 0.00000