HEADER IMMUNOGLOBULIN 23-JUN-95 1NGQ TITLE N1G9 (IGG1-LAMBDA) FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: N1G9 (IGG1-LAMBDA); COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB FRAGMENT; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: N1G9 (IGG1-LAMBDA); COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: FAB FRAGMENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL/6; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 STRAIN: C57BL/6 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MIZUTANI,Y.SATOW REVDAT 4 23-OCT-24 1NGQ 1 REMARK SEQADV REVDAT 3 04-APR-18 1NGQ 1 REMARK REVDAT 2 24-FEB-09 1NGQ 1 VERSN REVDAT 1 11-JUL-96 1NGQ 0 JRNL AUTH R.MIZUTANI,K.MIURA,T.NAKAYAMA,I.SHIMADA,Y.ARATA,Y.SATOW JRNL TITL THREE-DIMENSIONAL STRUCTURES OF THE FAB FRAGMENT OF MURINE JRNL TITL 2 N1G9 ANTIBODY FROM THE PRIMARY IMMUNE RESPONSE AND OF ITS JRNL TITL 3 COMPLEX WITH (4-HYDROXY-3-NITROPHENYL)ACETATE. JRNL REF J.MOL.BIOL. V. 254 208 1995 JRNL REFN ISSN 0022-2836 JRNL PMID 7490744 JRNL DOI 10.1006/JMBI.1995.0612 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.ALLEN,T.SIMON,F.SABLITZKY,K.RAJEWSKY,A.CUMANO REMARK 1 TITL ANTIBODY ENGINEERING FOR THE ANALYSIS OF AFFINITY MATURATION REMARK 1 TITL 2 OF AN ANTI-HAPTEN RESPONSE REMARK 1 REF EMBO J. V. 7 1995 1988 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.CUMANO,K.RAJEWSKY REMARK 1 TITL STRUCTURE OF PRIMARY ANTI-(4-HYDROXY-3-NITROPHENYL)ACETYL REMARK 1 TITL 2 (NP) ANTIBODIES IN NORMAL AND IDIOTYPICALLY SUPPRESSED REMARK 1 TITL 3 C57BL/6 MICE REMARK 1 REF EUR.J.IMMUNOL. V. 15 512 1985 REMARK 1 REFN ISSN 0014-2980 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.L.BOTHWELL,M.PASKIND,M.RETH,T.IMANISHI-KARI,K.RAJEWSKY, REMARK 1 AUTH 2 D.BALTIMORE REMARK 1 TITL SOMATIC VARIANTS OF MURINE IMMUNOGLOBULIN LAMBDA LIGHT REMARK 1 TITL 2 CHAINS REMARK 1 REF NATURE V. 298 380 1982 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 20815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1940 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.040 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.046 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.012 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.169 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.210 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.233 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : 0.229 ; 0.500 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.100 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 21.900; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 22.400; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.903 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.632 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.574 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.319 ; 4.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-93 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8931 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DOUBLE-CRYSTAL MONOCHROMATOR /PT REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : SATOW REMARK 200 INTENSITY-INTEGRATION SOFTWARE : OSC REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 5.310 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 2.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.97950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.94250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.94250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.48975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.94250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.94250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.46925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.94250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.94250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.48975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.94250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.94250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.46925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.97950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA L 212 REMARK 465 ASP L 213 REMARK 465 CYS L 214 REMARK 465 SER L 215 REMARK 465 ALA H 136 REMARK 465 ALA H 137 REMARK 465 GLN H 138 REMARK 465 THR H 139 REMARK 465 ASN H 140 REMARK 465 ASP H 221 REMARK 465 CYS H 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN L 1 CD OE1 NE2 REMARK 470 ASN L 131 CG OD1 ND2 REMARK 470 LYS L 152 CE NZ REMARK 470 GLN L 197 CG CD OE1 NE2 REMARK 470 LYS H 13 CD CE NZ REMARK 470 ARG H 43 CG CD NE CZ NH1 NH2 REMARK 470 SER H 135 OG REMARK 470 MET H 142 CG SD CE REMARK 470 PRO H 191 CG CD REMARK 470 LYS H 215 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS H 63 O4 SO4 H 301 2.14 REMARK 500 OE2 GLU L 127 NZ LYS H 150 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS H 19 NZ LYS H 19 8665 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 56 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU L 135 CA - CB - CG ANGL. DEV. = 22.3 DEGREES REMARK 500 ARG L 186 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG L 186 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG L 190 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLU L 201 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 GLU L 201 CB - CG - CD ANGL. DEV. = 19.8 DEGREES REMARK 500 GLU L 201 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG L 211 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU H 46 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 THR H 71 CA - CB - CG2 ANGL. DEV. = 11.0 DEGREES REMARK 500 ALA H 92 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 TYR H 94 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 CYS H 96 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 CYS H 96 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG H 220 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 43 30.54 102.63 REMARK 500 LEU L 49 -66.25 -99.88 REMARK 500 THR L 53 -50.69 72.69 REMARK 500 SER L 67 -179.97 -174.41 REMARK 500 ALA L 86 -171.53 -171.89 REMARK 500 SER L 95 -28.78 64.21 REMARK 500 ASN L 96 -14.89 -145.89 REMARK 500 LEU L 109 109.12 -37.41 REMARK 500 THR L 159 -10.21 -147.24 REMARK 500 ASN L 173 17.60 84.42 REMARK 500 ARG L 190 -79.23 -73.82 REMARK 500 GLU L 201 66.74 17.32 REMARK 500 SER H 85 60.62 37.55 REMARK 500 ALA H 92 -177.00 171.01 REMARK 500 PHE H 107 79.05 -100.97 REMARK 500 THR H 123 119.27 -38.93 REMARK 500 PHE H 153 140.43 -172.51 REMARK 500 SER H 179 61.89 76.75 REMARK 500 ASP H 180 -3.39 66.40 REMARK 500 SER H 193 -44.04 171.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 301 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE NUMBERING SYSTEM USED IN THIS ENTRY IS SEQUENTIAL, REMARK 999 FROM 1 TO 211 FOR THE LIGHT CHAIN AND FROM 1 TO 220 FOR REMARK 999 THE HEAVY CHAIN. THE CONVERSION TO KABAT NUMBERING REMARK 999 (E.A.KABAT,T.T.WU, M.REID-MILLER, H.M.PERRY, AND REMARK 999 K.S.GOTTESMAN (1991) SEQUENCES OF PROTEINS OF REMARK 999 IMMUNOLOGICAL INTEREST, 5TH ED., NATIONAL INSTITUTES OF REMARK 999 HEALTH BETHESDA, MD) FOR THE FAB REGIONS OF THE LIGHT AND REMARK 999 HEAVY CHAINS IS GIVEN BELOW. REMARK 999 REMARK 999 SEQUENTIAL NUMBERING KABAT NUMBERING REMARK 999 LIGHT CHAIN REMARK 999 1 - 9 1 - 9 REMARK 999 10 - 26 11 - 27 REMARK 999 27 27A REMARK 999 28 27B REMARK 999 29 27C REMARK 999 30 - 108 28 - 106 REMARK 999 109 106A REMARK 999 110 - 171 107 - 168 REMARK 999 172 - 202 170 - 200 REMARK 999 203 - 215 203 - 215 REMARK 999 HEAVY CHAIN REMARK 999 1 - 52 1 - 52 REMARK 999 53 52A REMARK 999 54 - 83 53 - 82 REMARK 999 84 82A REMARK 999 85 82B REMARK 999 86 82C REMARK 999 87 - 104 83 - 100 REMARK 999 105 100A REMARK 999 106 100J REMARK 999 107 100K REMARK 999 108 - 137 101 - 130 REMARK 999 138 - 159 133 - 154 REMARK 999 160 - 161 156 - 157 REMARK 999 162 - 169 162 - 169 REMARK 999 170 - 179 171 - 180 REMARK 999 180 - 193 183 - 196 REMARK 999 194 - 195 199 - 200 REMARK 999 196 - 217 202 - 223 REMARK 999 218 - 221 226 - 229 REMARK 999 222 235 DBREF 1NGQ L 1 215 GB 387376 AAA39089 20 234 DBREF 1NGQ H 1 222 UNP P01751 HV07_MOUSE 20 244 SEQADV 1NGQ GLN H 1 UNP P01751 GLU 22 CONFLICT SEQADV 1NGQ GLN H 3 UNP P01751 LYS 24 CONFLICT SEQADV 1NGQ GLN H 5 UNP P01751 HIS 26 CONFLICT SEQADV 1NGQ GLN H 6 UNP P01751 GLU 27 CONFLICT SEQADV 1NGQ PRO H 7 UNP P01751 SER 28 CONFLICT SEQADV 1NGQ ALA H 9 UNP P01751 PRO 30 CONFLICT SEQADV 1NGQ GLU H 10 UNP P01751 GLY 31 CONFLICT SEQADV 1NGQ LYS H 13 UNP P01751 ARG 34 CONFLICT SEQADV 1NGQ ALA H 16 UNP P01751 THR 37 CONFLICT SEQADV 1NGQ LEU H 20 UNP P01751 ILE 41 CONFLICT SEQADV 1NGQ SER H 31 UNP P01751 ASN 52 CONFLICT SEQADV 1NGQ MET H 34 UNP P01751 LEU 55 CONFLICT SEQADV 1NGQ HIS H 35 UNP P01751 GLY 56 CONFLICT SEQADV 1NGQ ARG H 43 UNP P01751 HIS 64 CONFLICT SEQADV 1NGQ ARG H 50 UNP P01751 ASP 71 CONFLICT SEQADV 1NGQ ASP H 52 UNP P01751 TYR 73 CONFLICT SEQADV 1NGQ ASN H 54 UNP P01751 GLY 75 CONFLICT SEQADV 1NGQ SER H 55 UNP P01751 GLY 76 CONFLICT SEQADV 1NGQ GLY H 57 UNP P01751 TYR 78 CONFLICT SEQADV 1NGQ LYS H 59 UNP P01751 ASN 80 CONFLICT SEQADV 1NGQ SER H 66 UNP P01751 GLY 87 CONFLICT SEQADV 1NGQ VAL H 72 UNP P01751 ALA 93 CONFLICT SEQADV 1NGQ LYS H 74 UNP P01751 THR 95 CONFLICT SEQADV 1NGQ PRO H 75 UNP P01751 SER 96 CONFLICT SEQADV 1NGQ TYR H 95 UNP P01751 PHE 116 CONFLICT SEQADV 1NGQ TYR H 99 UNP P01751 INSERTION SEQADV 1NGQ ASP H 100 UNP P01751 PHE 120 CONFLICT SEQADV 1NGQ H UNP P01751 TYR 126 DELETION SEQADV 1NGQ H UNP P01751 TRP 127 DELETION SEQADV 1NGQ TYR H 109 UNP P01751 VAL 131 CONFLICT SEQADV 1NGQ LEU H 116 UNP P01751 VAL 138 CONFLICT SEQADV 1NGQ PRO H 194 UNP P01751 THR 216 CONFLICT SEQRES 1 L 215 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 L 215 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 L 215 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 L 215 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 L 215 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 L 215 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE THR SEQRES 7 L 215 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 L 215 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 L 215 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 L 215 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 L 215 LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 L 215 LEU SER ARG ALA ASP CYS SER SEQRES 1 H 222 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 H 222 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 222 TYR THR PHE THR SER TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 222 ARG PRO GLY ARG GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 222 PRO ASN SER GLY GLY THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 222 SER LYS ALA THR LEU THR VAL ASP LYS PRO SER SER THR SEQRES 7 H 222 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 222 ALA VAL TYR TYR CYS ALA ARG TYR ASP TYR TYR GLY SER SEQRES 9 H 222 SER TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR SEQRES 10 H 222 VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 H 222 LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL SEQRES 12 H 222 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 H 222 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 H 222 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 H 222 THR LEU SER SER SER VAL THR VAL PRO SER SER PRO TRP SEQRES 16 H 222 PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 H 222 SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP SEQRES 18 H 222 CYS HET SO4 H 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *140(H2 O) HELIX 1 1 THR L 184 ARG L 190 1 7 SHEET 1 A 4 VAL L 4 GLN L 6 0 SHEET 2 A 4 THR L 17 SER L 24 -1 N ARG L 23 O THR L 5 SHEET 3 A 4 LYS L 72 THR L 78 -1 N ILE L 77 O VAL L 18 SHEET 4 A 4 PHE L 64 ILE L 69 -1 N ILE L 69 O LYS L 72 SHEET 1 B 5 ALA L 9 SER L 13 0 SHEET 2 B 5 THR L 104 LEU L 109 1 N LYS L 105 O LEU L 10 SHEET 3 B 5 ALA L 86 ALA L 91 -1 N TYR L 88 O THR L 104 SHEET 4 B 5 ASN L 36 LYS L 41 -1 N GLU L 40 O ILE L 87 SHEET 5 B 5 LEU L 45 ILE L 50 -1 N ILE L 50 O TRP L 37 SHEET 1 C 2 ALA L 91 TRP L 93 0 SHEET 2 C 2 TRP L 98 PHE L 100 -1 N VAL L 99 O LEU L 92 SHEET 1 D 4 SER L 117 PHE L 121 0 SHEET 2 D 4 LYS L 132 THR L 140 -1 N THR L 140 O SER L 117 SHEET 3 D 4 ALA L 177 THR L 184 -1 N LEU L 183 O ALA L 133 SHEET 4 D 4 MET L 162 THR L 164 -1 N GLU L 163 O TYR L 180 SHEET 1 E 3 VAL L 147 VAL L 153 0 SHEET 2 E 3 SER L 193 HIS L 200 -1 N THR L 199 O THR L 148 SHEET 3 E 3 HIS L 203 SER L 210 -1 N LEU L 209 O TYR L 194 SHEET 1 F 4 GLN H 3 GLN H 5 0 SHEET 2 F 4 VAL H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 F 4 THR H 78 LEU H 83 -1 N LEU H 83 O VAL H 18 SHEET 4 F 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 G 6 ALA H 9 VAL H 12 0 SHEET 2 G 6 THR H 114 VAL H 118 1 N THR H 115 O GLU H 10 SHEET 3 G 6 ALA H 92 TYR H 99 -1 N TYR H 94 O THR H 114 SHEET 4 G 6 TRP H 33 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 5 G 6 LEU H 45 ASP H 52 -1 N ILE H 51 O MET H 34 SHEET 6 G 6 THR H 58 TYR H 60 -1 N LYS H 59 O ARG H 50 SHEET 1 H 4 SER H 127 LEU H 131 0 SHEET 2 H 4 MET H 142 TYR H 152 -1 N LYS H 150 O SER H 127 SHEET 3 H 4 TYR H 182 PRO H 191 -1 N VAL H 190 O VAL H 143 SHEET 4 H 4 VAL H 170 THR H 172 -1 N HIS H 171 O SER H 187 SHEET 1 I 3 THR H 158 TRP H 161 0 SHEET 2 I 3 VAL H 200 HIS H 206 -1 N ALA H 205 O THR H 158 SHEET 3 I 3 THR H 211 ILE H 217 -1 N ILE H 217 O VAL H 200 SHEET 1 J 2 VAL H 176 GLN H 178 0 SHEET 2 J 2 LEU H 181 THR H 183 -1 N THR H 183 O VAL H 176 SSBOND 1 CYS L 22 CYS L 90 1555 1555 1.96 SSBOND 2 CYS L 137 CYS L 196 1555 1555 2.01 SSBOND 3 CYS H 22 CYS H 96 1555 1555 1.94 SSBOND 4 CYS H 147 CYS H 202 1555 1555 2.02 CISPEP 1 TYR L 143 PRO L 144 0 -0.22 CISPEP 2 PHE H 153 PRO H 154 0 -2.39 CISPEP 3 GLU H 155 PRO H 156 0 -0.86 CISPEP 4 TRP H 195 PRO H 196 0 1.77 SITE 1 AC1 5 ARG H 40 LYS H 63 HOH H 341 PRO L 112 SITE 2 AC1 5 LYS L 113 CRYST1 109.885 109.885 97.959 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010208 0.00000