HEADER FIMBRIAL PROTEIN 05-OCT-95 1NIL TITLE A COMPARISON OF NMR SOLUTION STRUCTURES OF THE RECEPTOR BINDING TITLE 2 DOMAINS OF PSEUDOMONAS AERUGINOSA PILI STRAINS PAO, KB7, AND PAK: TITLE 3 IMPLICATIONS FOR RECEPTOR BINDING AND SYNTHETIC VACCINE DESIGN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAK PILIN, TRANS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FIMBRIAL PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: K KEYWDS FIMBRIAL PROTEIN EXPDTA SOLUTION NMR AUTHOR A.P.CAMPBELL,C.MCINNES,R.S.HODGES,B.D.SYKES REVDAT 3 29-NOV-17 1NIL 1 REMARK HELIX REVDAT 2 24-FEB-09 1NIL 1 VERSN REVDAT 1 29-JAN-96 1NIL 0 JRNL AUTH A.P.CAMPBELL,C.MCINNES,R.S.HODGES,B.D.SYKES JRNL TITL COMPARISON OF NMR SOLUTION STRUCTURES OF THE RECEPTOR JRNL TITL 2 BINDING DOMAINS OF PSEUDOMONAS AERUGINOSA PILI STRAINS PAO, JRNL TITL 3 KB7, AND PAK: IMPLICATIONS FOR RECEPTOR BINDING AND JRNL TITL 4 SYNTHETIC VACCINE DESIGN. JRNL REF BIOCHEMISTRY V. 34 16255 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 8845350 JRNL DOI 10.1021/BI00050A005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MCINNES,C.M.KAY,R.S.HODGES,B.D.SYKES REMARK 1 TITL CONFORMATIONAL DIFFERENCES BETWEEN CIS AND TRANS PROLINE REMARK 1 TITL 2 ISOMERS OF A PEPTIDE ANTIGEN REPRESENTING THE RECEPTOR REMARK 1 TITL 3 BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA AS STUDIED BY 1H REMARK 1 TITL 4 NMR REMARK 1 REF BIOPOLYMERS V. 34 1221 1994 REMARK 1 REFN ISSN 0006-3525 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.MCINNES,F.D.SOENNICHSEN,C.M.KAY,R.S.HODGES,B.D.SYKES REMARK 1 TITL NMR SOLUTION STRUCTURE AND FLEXIBILITY OF A PEPTIDE ANTIGEN REMARK 1 TITL 2 REPRESENTING THE RECEPTOR BINDING DOMAIN OF PSEUDOMONAS REMARK 1 TITL 3 AERUGINOSA REMARK 1 REF BIOCHEMISTRY V. 32 13432 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PEPFLEX II REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175303. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C SER A 131 H ASP A 132 1.48 REMARK 500 C ACE A 127 H LYS A 128 1.50 REMARK 500 C LYS A 128 H CYS A 129 1.59 REMARK 500 O SER A 131 N ASP A 132 1.67 REMARK 500 O ACE A 127 N LYS A 128 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ACE A 127 C LYS A 128 N -0.304 REMARK 500 LYS A 128 N LYS A 128 CA -0.347 REMARK 500 LYS A 128 CA LYS A 128 CB -0.256 REMARK 500 LYS A 128 CB LYS A 128 CG -0.491 REMARK 500 LYS A 128 CG LYS A 128 CD -0.360 REMARK 500 LYS A 128 CD LYS A 128 CE -0.488 REMARK 500 LYS A 128 CE LYS A 128 NZ -0.456 REMARK 500 LYS A 128 CA LYS A 128 C -0.266 REMARK 500 LYS A 128 C LYS A 128 O -0.247 REMARK 500 LYS A 128 C CYS A 129 N -0.258 REMARK 500 CYS A 129 N CYS A 129 CA -0.239 REMARK 500 CYS A 129 CA CYS A 129 CB -0.173 REMARK 500 CYS A 129 CB CYS A 129 SG -0.193 REMARK 500 CYS A 129 C CYS A 129 O -0.154 REMARK 500 CYS A 129 C THR A 130 N -0.162 REMARK 500 THR A 130 CA THR A 130 CB -0.219 REMARK 500 THR A 130 CB THR A 130 OG1 -0.638 REMARK 500 THR A 130 CB THR A 130 CG2 -0.595 REMARK 500 THR A 130 CA THR A 130 C -0.177 REMARK 500 THR A 130 C THR A 130 O -0.184 REMARK 500 SER A 131 N SER A 131 CA -0.159 REMARK 500 SER A 131 CA SER A 131 CB -0.362 REMARK 500 SER A 131 CB SER A 131 OG -1.170 REMARK 500 SER A 131 C SER A 131 O -0.259 REMARK 500 SER A 131 C ASP A 132 N -0.296 REMARK 500 ASP A 132 N ASP A 132 CA -0.133 REMARK 500 ASP A 132 CA ASP A 132 CB -0.200 REMARK 500 ASP A 132 CB ASP A 132 CG -0.662 REMARK 500 ASP A 132 CG ASP A 132 OD1 -0.920 REMARK 500 ASP A 132 CG ASP A 132 OD2 -0.860 REMARK 500 ASP A 132 CA ASP A 132 C -0.213 REMARK 500 ASP A 132 C ASP A 132 O -0.286 REMARK 500 GLN A 133 N GLN A 133 CA -0.185 REMARK 500 GLN A 133 CA GLN A 133 CB -0.469 REMARK 500 GLN A 133 CB GLN A 133 CG -0.444 REMARK 500 GLN A 133 CG GLN A 133 CD -0.524 REMARK 500 GLN A 133 CD GLN A 133 OE1 -0.814 REMARK 500 GLN A 133 CD GLN A 133 NE2 -0.927 REMARK 500 ASP A 134 CB ASP A 134 CG -0.192 REMARK 500 ASP A 134 CG ASP A 134 OD1 -0.705 REMARK 500 ASP A 134 CG ASP A 134 OD2 -0.675 REMARK 500 GLU A 135 CG GLU A 135 CD -0.138 REMARK 500 GLU A 135 CD GLU A 135 OE1 -0.502 REMARK 500 GLU A 135 CD GLU A 135 OE2 -0.475 REMARK 500 GLN A 136 CB GLN A 136 CG -0.566 REMARK 500 GLN A 136 CG GLN A 136 CD -0.258 REMARK 500 GLN A 136 CD GLN A 136 OE1 -0.617 REMARK 500 GLN A 136 CD GLN A 136 NE2 -0.701 REMARK 500 PHE A 137 CG PHE A 137 CD2 -0.662 REMARK 500 PHE A 137 CG PHE A 137 CD1 -0.703 REMARK 500 REMARK 500 THIS ENTRY HAS 72 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 128 CA - CB - CG ANGL. DEV. = 28.6 DEGREES REMARK 500 LYS A 128 CB - CG - CD ANGL. DEV. = 35.0 DEGREES REMARK 500 LYS A 128 CG - CD - CE ANGL. DEV. = 41.6 DEGREES REMARK 500 LYS A 128 CD - CE - NZ ANGL. DEV. = 52.3 DEGREES REMARK 500 CYS A 129 CB - CA - C ANGL. DEV. = 7.6 DEGREES REMARK 500 THR A 130 OG1 - CB - CG2 ANGL. DEV. = -17.9 DEGREES REMARK 500 THR A 130 CA - CB - CG2 ANGL. DEV. = 11.5 DEGREES REMARK 500 SER A 131 CA - CB - OG ANGL. DEV. = 45.9 DEGREES REMARK 500 SER A 131 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 ASP A 132 CA - CB - CG ANGL. DEV. = 30.2 DEGREES REMARK 500 ASP A 132 OD1 - CG - OD2 ANGL. DEV. = -84.1 DEGREES REMARK 500 ASP A 132 CB - CG - OD1 ANGL. DEV. = 42.6 DEGREES REMARK 500 ASP A 132 CB - CG - OD2 ANGL. DEV. = 41.5 DEGREES REMARK 500 GLN A 133 OE1 - CD - NE2 ANGL. DEV. = 102.4 DEGREES REMARK 500 GLN A 133 CG - CD - OE1 ANGL. DEV. = 49.7 DEGREES REMARK 500 GLN A 133 CG - CD - NE2 ANGL. DEV. = 52.5 DEGREES REMARK 500 ASP A 134 OD1 - CG - OD2 ANGL. DEV. = -81.7 DEGREES REMARK 500 ASP A 134 CB - CG - OD1 ANGL. DEV. = 42.7 DEGREES REMARK 500 ASP A 134 CB - CG - OD2 ANGL. DEV. = 39.1 DEGREES REMARK 500 GLU A 135 OE1 - CD - OE2 ANGL. DEV. = -34.3 DEGREES REMARK 500 GLU A 135 CG - CD - OE1 ANGL. DEV. = 22.1 DEGREES REMARK 500 GLU A 135 CG - CD - OE2 ANGL. DEV. = 12.2 DEGREES REMARK 500 GLN A 136 CA - CB - CG ANGL. DEV. = 28.5 DEGREES REMARK 500 GLN A 136 CB - CG - CD ANGL. DEV. = 33.3 DEGREES REMARK 500 GLN A 136 OE1 - CD - NE2 ANGL. DEV. = -53.8 DEGREES REMARK 500 GLN A 136 CG - CD - OE1 ANGL. DEV. = 26.2 DEGREES REMARK 500 GLN A 136 CG - CD - NE2 ANGL. DEV. = 27.4 DEGREES REMARK 500 PHE A 137 CB - CG - CD2 ANGL. DEV. = 52.4 DEGREES REMARK 500 PHE A 137 CD1 - CG - CD2 ANGL. DEV. = 109.5 DEGREES REMARK 500 PHE A 137 CB - CG - CD1 ANGL. DEV. = 53.7 DEGREES REMARK 500 PHE A 137 CG - CD1 - CE1 ANGL. DEV. = 54.5 DEGREES REMARK 500 PHE A 137 CG - CD2 - CE2 ANGL. DEV. = 55.1 DEGREES REMARK 500 PHE A 137 CD1 - CE1 - CZ ANGL. DEV. = 55.6 DEGREES REMARK 500 PHE A 137 CE1 - CZ - CE2 ANGL. DEV. = 111.1 DEGREES REMARK 500 PHE A 137 CZ - CE2 - CD2 ANGL. DEV. = 55.3 DEGREES REMARK 500 LYS A 140 CB - CG - CD ANGL. DEV. = 15.7 DEGREES REMARK 500 LYS A 140 CD - CE - NZ ANGL. DEV. = 19.8 DEGREES REMARK 500 SER A 143 CA - CB - OG ANGL. DEV. = 52.9 DEGREES REMARK 500 LYS A 144 CA - CB - CG ANGL. DEV. = 36.6 DEGREES REMARK 500 LYS A 144 CB - CG - CD ANGL. DEV. = 34.4 DEGREES REMARK 500 LYS A 144 CG - CD - CE ANGL. DEV. = 34.5 DEGREES REMARK 500 LYS A 144 CD - CE - NZ ANGL. DEV. = 26.5 DEGREES REMARK 500 LYS A 144 CA - C - O ANGL. DEV. = 30.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 131 -76.22 -83.31 REMARK 500 ASP A 132 -72.12 -103.61 REMARK 500 GLN A 133 85.78 -153.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NIM RELATED DB: PDB DBREF 1NIL A 128 144 UNP P02973 FMPA_PSEAE 134 150 SEQRES 1 A 18 ACE LYS CYS THR SER ASP GLN ASP GLU GLN PHE ILE PRO SEQRES 2 A 18 LYS GLY CYS SER LYS HET ACE A 127 6 HETNAM ACE ACETYL GROUP FORMUL 1 ACE C2 H4 O SSBOND 1 CYS A 129 CYS A 142 1555 1555 1.24 LINK C ACE A 127 N LYS A 128 1555 1555 1.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 HETATM 1 C ACE A 127 -2.510 -4.930 1.600 1.00 0.00 C HETATM 2 O ACE A 127 -2.669 -4.664 2.426 1.00 0.00 O HETATM 3 CH3 ACE A 127 -3.392 -5.319 1.027 1.00 0.00 C HETATM 4 H1 ACE A 127 -3.653 -5.575 1.071 1.00 0.00 H HETATM 5 H2 ACE A 127 -3.462 -5.393 0.590 1.00 0.00 H HETATM 6 H3 ACE A 127 -3.771 -5.292 0.976 1.00 0.00 H