HEADER ISOMERASE 12-JAN-03 1NN4 TITLE STRUCTURAL GENOMICS, RPIB/ALSB COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE 5-PHOSPHATE ISOMERASE B; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PHOSPHORIBOISOMERASE B, RPIB/ALSB; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: RPIB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, ALPHA/BETA/ALPHA SANDWICH, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.G.ZHANG,C.E.ANDERSSON,S.L.MOWBRAY,A.SAVCHENKO,T.SKARINA, AUTHOR 2 E.EVDOKIMOVA,S.L.BEASLEY,C.ARROWSMITH,A.M.EDWARDS,A.JOACHIMIAK, AUTHOR 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 14-FEB-24 1NN4 1 SEQADV REVDAT 5 11-OCT-17 1NN4 1 REMARK REVDAT 4 24-FEB-09 1NN4 1 VERSN REVDAT 3 18-JAN-05 1NN4 1 AUTHOR KEYWDS REMARK REVDAT 2 09-NOV-04 1NN4 1 JRNL REVDAT 1 29-JUL-03 1NN4 0 JRNL AUTH R.G.ZHANG,C.E.ANDERSSON,T.SKARINA,E.EVDOKIMOVA,A.M.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK,A.SAVCHENKO,S.L.MOWBRAY JRNL TITL THE 2.2 A RESOLUTION STRUCTURE OF RPIB/ALSB FROM ESCHERICHIA JRNL TITL 2 COLI ILLUSTRATES A NEW APPROACH TO THE RIBOSE-5-PHOSPHATE JRNL TITL 3 ISOMERASE REACTION. JRNL REF J.MOL.BIOL. V. 332 1083 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14499611 JRNL DOI 10.1016/J.JMB.2003.08.009 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 69714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3432 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9657 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 472 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.82000 REMARK 3 B22 (A**2) : -12.82000 REMARK 3 B33 (A**2) : 25.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.270 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.020 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 47.30 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE NUMBER OF REFLECTIONS FOR REMARK 3 REFINEMENT IS GREATER THAN THE NUMBER OF REFLECTIONS FOR DATA REMARK 3 COLLECTION, BECAUSE IN CNS (HLML TAGET) REFINEMENT, THE FRIEDEL' REMARK 3 S PAIR WAS TREATED AS TWO SEPERATED REFLECTIONS. REMARK 4 REMARK 4 1NN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795, 0.9797, 0.94656 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38823 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.830 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M NA ACETATE, 4% ETHYLENE GLYCOL, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 72.79400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 72.79400 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.39200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 72.79400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.69600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 72.79400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.08800 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.79400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.79400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.39200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 72.79400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 56.08800 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 72.79400 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 18.69600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE 4 MONOMERS (TWO DIMERS) IN ASYMMETRIC REMARK 300 UNIT. THE BIOLOGICAL ASSEMBLY OF TWO DIMERS ARE GENERATED REMARK 300 BY CHAINS A/D, AND B/C. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 147 REMARK 465 ARG A 148 REMARK 465 ASN A 149 REMARK 465 HIS B -12 REMARK 465 ARG B 147 REMARK 465 ARG B 148 REMARK 465 ASN B 149 REMARK 465 ARG C 147 REMARK 465 ARG C 148 REMARK 465 ASN C 149 REMARK 465 HIS D -12 REMARK 465 ARG D 148 REMARK 465 ASN D 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 135 CG CD OE1 NE2 REMARK 470 GLU C 139 CG CD OE1 OE2 REMARK 470 GLN C 146 CG CD OE1 NE2 REMARK 470 GLN D 135 CG CD OE1 NE2 REMARK 470 GLN D 136 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 144 N GLN A 146 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 36 NE1 TRP A 36 CE2 0.113 REMARK 500 TRP C 36 NE1 TRP C 36 CE2 0.115 REMARK 500 TRP D 36 NE1 TRP D 36 CE2 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 66 CA - CB - SG ANGL. DEV. = 10.2 DEGREES REMARK 500 CYS B 66 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 CYS C 66 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 CYS D 66 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -10 44.13 -143.34 REMARK 500 LYS A 16 -72.63 -44.09 REMARK 500 LYS A 33 43.93 -96.05 REMARK 500 GLU A 145 27.32 -48.29 REMARK 500 GLU B 145 -8.51 -54.47 REMARK 500 ASP C 101 49.49 39.81 REMARK 500 THR D 35 -167.17 -76.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 133 0.11 SIDE CHAIN REMARK 500 ARG B 133 0.23 SIDE CHAIN REMARK 500 ARG C 133 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC072 RELATED DB: TARGETDB DBREF 1NN4 A 1 149 UNP P37351 RPIB_ECOLI 1 149 DBREF 1NN4 B 1 149 UNP P37351 RPIB_ECOLI 1 149 DBREF 1NN4 C 1 149 UNP P37351 RPIB_ECOLI 1 149 DBREF 1NN4 D 1 149 UNP P37351 RPIB_ECOLI 1 149 SEQADV 1NN4 HIS A -12 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS A -11 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS A -10 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER A -9 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER A -8 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLY A -7 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 LEU A -6 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 THR A -5 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 PRO A -4 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 ARG A -3 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLY A -2 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER A -1 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLN A 0 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS B -12 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS B -11 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS B -10 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER B -9 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER B -8 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLY B -7 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 LEU B -6 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 THR B -5 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 PRO B -4 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 ARG B -3 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLY B -2 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER B -1 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLN B 0 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS C -12 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS C -11 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS C -10 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER C -9 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER C -8 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLY C -7 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 LEU C -6 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 THR C -5 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 PRO C -4 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 ARG C -3 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLY C -2 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER C -1 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLN C 0 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS D -12 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS D -11 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 HIS D -10 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER D -9 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER D -8 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLY D -7 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 LEU D -6 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 THR D -5 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 PRO D -4 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 ARG D -3 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLY D -2 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 SER D -1 UNP P37351 CLONING ARTIFACT SEQADV 1NN4 GLN D 0 UNP P37351 CLONING ARTIFACT SEQRES 1 A 162 HIS HIS HIS SER SER GLY LEU THR PRO ARG GLY SER GLN SEQRES 2 A 162 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 3 A 162 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 4 A 162 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 5 A 162 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 6 A 162 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 7 A 162 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 8 A 162 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 9 A 162 SER ALA GLN LEU SER ARG GLN HIS ASN ASP THR ASN VAL SEQRES 10 A 162 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 11 A 162 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 12 A 162 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 13 A 162 ILE GLU GLN ARG ARG ASN SEQRES 1 B 162 HIS HIS HIS SER SER GLY LEU THR PRO ARG GLY SER GLN SEQRES 2 B 162 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 3 B 162 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 4 B 162 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 5 B 162 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 6 B 162 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 7 B 162 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 8 B 162 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 9 B 162 SER ALA GLN LEU SER ARG GLN HIS ASN ASP THR ASN VAL SEQRES 10 B 162 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 11 B 162 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 12 B 162 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 13 B 162 ILE GLU GLN ARG ARG ASN SEQRES 1 C 162 HIS HIS HIS SER SER GLY LEU THR PRO ARG GLY SER GLN SEQRES 2 C 162 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 3 C 162 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 4 C 162 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 5 C 162 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 6 C 162 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 7 C 162 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 8 C 162 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 9 C 162 SER ALA GLN LEU SER ARG GLN HIS ASN ASP THR ASN VAL SEQRES 10 C 162 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 11 C 162 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 12 C 162 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 13 C 162 ILE GLU GLN ARG ARG ASN SEQRES 1 D 162 HIS HIS HIS SER SER GLY LEU THR PRO ARG GLY SER GLN SEQRES 2 D 162 MET LYS LYS ILE ALA PHE GLY CYS ASP HIS VAL GLY PHE SEQRES 3 D 162 ILE LEU LYS HIS GLU ILE VAL ALA HIS LEU VAL GLU ARG SEQRES 4 D 162 GLY VAL GLU VAL ILE ASP LYS GLY THR TRP SER SER GLU SEQRES 5 D 162 ARG THR ASP TYR PRO HIS TYR ALA SER GLN VAL ALA LEU SEQRES 6 D 162 ALA VAL ALA GLY GLY GLU VAL ASP GLY GLY ILE LEU ILE SEQRES 7 D 162 CYS GLY THR GLY VAL GLY ILE SER ILE ALA ALA ASN LYS SEQRES 8 D 162 PHE ALA GLY ILE ARG ALA VAL VAL CYS SER GLU PRO TYR SEQRES 9 D 162 SER ALA GLN LEU SER ARG GLN HIS ASN ASP THR ASN VAL SEQRES 10 D 162 LEU ALA PHE GLY SER ARG VAL VAL GLY LEU GLU LEU ALA SEQRES 11 D 162 LYS MET ILE VAL ASP ALA TRP LEU GLY ALA GLN TYR GLU SEQRES 12 D 162 GLY GLY ARG HIS GLN GLN ARG VAL GLU ALA ILE THR ALA SEQRES 13 D 162 ILE GLU GLN ARG ARG ASN FORMUL 5 HOH *298(H2 O) HELIX 1 1 GLY A 12 ARG A 26 1 15 HELIX 2 2 ASP A 42 GLY A 56 1 15 HELIX 3 3 GLY A 69 LYS A 78 1 10 HELIX 4 4 GLU A 89 ASP A 101 1 13 HELIX 5 5 GLY A 113 ALA A 127 1 15 HELIX 6 6 GLN A 136 GLU A 145 1 10 HELIX 7 7 GLY B 12 ARG B 26 1 15 HELIX 8 8 ASP B 42 GLY B 56 1 15 HELIX 9 9 GLY B 69 LYS B 78 1 10 HELIX 10 10 GLU B 89 ASP B 101 1 13 HELIX 11 11 GLY B 113 ALA B 127 1 15 HELIX 12 12 GLY B 131 ARG B 133 5 3 HELIX 13 13 HIS B 134 GLU B 145 1 12 HELIX 14 14 GLY C 12 ARG C 26 1 15 HELIX 15 15 ASP C 42 GLY C 56 1 15 HELIX 16 16 GLY C 69 ASN C 77 1 9 HELIX 17 17 GLU C 89 ASP C 101 1 13 HELIX 18 18 GLY C 113 ALA C 127 1 15 HELIX 19 19 ARG C 133 VAL C 138 1 6 HELIX 20 20 ALA C 140 GLU C 145 1 6 HELIX 21 21 GLY D 12 ARG D 26 1 15 HELIX 22 22 ASP D 42 GLY D 56 1 15 HELIX 23 23 GLY D 69 LYS D 78 1 10 HELIX 24 24 GLU D 89 ASP D 101 1 13 HELIX 25 25 GLY D 113 ALA D 127 1 15 HELIX 26 26 ARG D 137 ARG D 147 1 11 SHEET 1 A 2 LEU A -6 PRO A -4 0 SHEET 2 A 2 LEU B -6 PRO B -4 -1 O THR B -5 N THR A -5 SHEET 1 B 5 GLU A 29 ASP A 32 0 SHEET 2 B 5 LYS A 3 CYS A 8 1 N ILE A 4 O ILE A 31 SHEET 3 B 5 GLY A 61 CYS A 66 1 O GLY A 61 N ALA A 5 SHEET 4 B 5 VAL A 104 GLY A 108 1 O LEU A 105 N LEU A 64 SHEET 5 B 5 ALA A 84 VAL A 86 1 N VAL A 85 O VAL A 104 SHEET 1 C 5 GLU B 29 ASP B 32 0 SHEET 2 C 5 LYS B 3 CYS B 8 1 N ILE B 4 O ILE B 31 SHEET 3 C 5 GLY B 61 CYS B 66 1 O ILE B 63 N GLY B 7 SHEET 4 C 5 VAL B 104 GLY B 108 1 O LEU B 105 N GLY B 62 SHEET 5 C 5 ALA B 84 VAL B 86 1 N VAL B 85 O VAL B 104 SHEET 1 D 2 LEU C -6 PRO C -4 0 SHEET 2 D 2 LEU D -6 PRO D -4 -1 O THR D -5 N THR C -5 SHEET 1 E 5 GLU C 29 ASP C 32 0 SHEET 2 E 5 LYS C 3 CYS C 8 1 N PHE C 6 O ILE C 31 SHEET 3 E 5 GLY C 61 CYS C 66 1 O GLY C 61 N ALA C 5 SHEET 4 E 5 VAL C 104 GLY C 108 1 O LEU C 105 N GLY C 62 SHEET 5 E 5 ALA C 84 VAL C 86 1 N VAL C 85 O VAL C 104 SHEET 1 F 5 GLU D 29 ASP D 32 0 SHEET 2 F 5 LYS D 3 CYS D 8 1 N ILE D 4 O ILE D 31 SHEET 3 F 5 GLY D 61 CYS D 66 1 O GLY D 61 N ALA D 5 SHEET 4 F 5 VAL D 104 GLY D 108 1 O LEU D 105 N LEU D 64 SHEET 5 F 5 ALA D 84 VAL D 86 1 N VAL D 85 O VAL D 104 CISPEP 1 GLY A 34 THR A 35 0 -0.08 CISPEP 2 GLY B 34 THR B 35 0 0.07 CISPEP 3 GLY C 34 THR C 35 0 -0.02 CISPEP 4 GLY D 34 THR D 35 0 0.07 CRYST1 145.588 145.588 74.784 90.00 90.00 90.00 I 41 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013372 0.00000