HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-JAN-03 1NNQ TITLE RUBRERYTHRIN FROM PYROCOCCUS FURIOSUS PFU-1210814 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBRERYTHRIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RUBRERYTHRIN, PYROCOCCUS FURIOSUS, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 3 GENOMICS, SECSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.-J.LIU,W.TEMPEL,F.D.SCHUBOT,A.SHAH,W.B.ARENDALL III,J.P.ROSE, AUTHOR 2 D.C.RICHARDSON,J.S.RICHARDSON,B.-C.WANG,SOUTHEAST COLLABORATORY FOR AUTHOR 3 STRUCTURAL GENOMICS (SECSG) REVDAT 7 14-FEB-24 1NNQ 1 REMARK LINK REVDAT 6 11-OCT-17 1NNQ 1 REMARK REVDAT 5 13-JUL-11 1NNQ 1 VERSN REVDAT 4 24-FEB-09 1NNQ 1 VERSN REVDAT 3 15-MAR-05 1NNQ 1 JRNL REVDAT 2 01-FEB-05 1NNQ 1 AUTHOR KEYWDS REMARK REVDAT 1 02-MAR-04 1NNQ 0 JRNL AUTH W.TEMPEL,Z.-J.LIU,F.D.SCHUBOT,A.SHAH,M.V.WEINBERG, JRNL AUTH 2 F.E.JENNEY JR.,W.B.ARENDALL III,M.W.ADAMS,J.S.RICHARDSON, JRNL AUTH 3 D.C.RICHARDSON,J.P.ROSE,B.-C.WANG JRNL TITL STRUCTURAL GENOMICS OF PYROCOCCUS FURIOSUS: X-RAY JRNL TITL 2 CRYSTALLOGRAPHY REVEALS 3D DOMAIN SWAPPING IN RUBRERYTHRIN JRNL REF PROTEINS V. 57 878 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15468318 JRNL DOI 10.1002/PROT.20280 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : 2.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2676 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3613 ; 1.233 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 5.259 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2058 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1233 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 71 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.037 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.131 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.067 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1689 ; 1.681 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2687 ; 2.784 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 987 ; 2.085 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 926 ; 3.087 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 90.3510 51.8150 13.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0428 REMARK 3 T33: 0.0529 T12: -0.0521 REMARK 3 T13: 0.0223 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 6.2362 L22: 5.4978 REMARK 3 L33: 4.6742 L12: -4.4484 REMARK 3 L13: 3.8056 L23: -3.5355 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.0280 S13: 0.1072 REMARK 3 S21: 0.0066 S22: 0.0558 S23: 0.1208 REMARK 3 S31: -0.0985 S32: -0.1333 S33: -0.0704 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 96.4480 65.5770 26.0980 REMARK 3 T TENSOR REMARK 3 T11: 0.1410 T22: 0.1165 REMARK 3 T33: 0.0679 T12: 0.0577 REMARK 3 T13: 0.0158 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 7.8577 L22: 1.0267 REMARK 3 L33: 6.8783 L12: 3.3532 REMARK 3 L13: -5.9346 L23: -2.5281 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.4239 S13: 0.0452 REMARK 3 S21: -0.0069 S22: 0.0352 S23: 0.0502 REMARK 3 S31: 0.1059 S32: 0.2092 S33: -0.0796 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 90.2910 70.2630 24.7940 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1147 REMARK 3 T33: 0.1516 T12: 0.0781 REMARK 3 T13: 0.0082 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 4.9490 L22: 2.8840 REMARK 3 L33: 9.8939 L12: 2.5308 REMARK 3 L13: -5.9745 L23: -3.9933 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: -0.2099 S13: 0.1494 REMARK 3 S21: 0.1425 S22: 0.0299 S23: 0.1032 REMARK 3 S31: -0.1283 S32: 0.0067 S33: -0.1154 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 36 REMARK 3 ORIGIN FOR THE GROUP (A): 92.0230 58.7870 19.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.0251 REMARK 3 T33: 0.0290 T12: 0.0395 REMARK 3 T13: -0.0315 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 11.1270 L22: 3.1522 REMARK 3 L33: 5.6522 L12: 3.8100 REMARK 3 L13: -6.5270 L23: -2.4808 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: -0.1290 S13: -0.1107 REMARK 3 S21: -0.0195 S22: 0.0409 S23: 0.1057 REMARK 3 S31: 0.1769 S32: 0.0731 S33: 0.0281 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): 84.4890 63.5900 19.3560 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.0585 REMARK 3 T33: 0.0969 T12: 0.0459 REMARK 3 T13: 0.0192 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 3.4700 L22: 0.6155 REMARK 3 L33: 11.3372 L12: 0.2767 REMARK 3 L13: -4.8431 L23: -0.6979 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: -0.0383 S13: 0.2189 REMARK 3 S21: 0.0193 S22: 0.2213 S23: 0.1854 REMARK 3 S31: 0.3163 S32: -0.2977 S33: -0.1846 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): 93.1500 43.5120 7.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.1422 T22: 0.1674 REMARK 3 T33: 0.0780 T12: -0.0358 REMARK 3 T13: -0.0308 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 2.6732 L22: 1.0210 REMARK 3 L33: 3.0666 L12: -1.8545 REMARK 3 L13: 2.0192 L23: -1.3764 REMARK 3 S TENSOR REMARK 3 S11: 0.2143 S12: 0.3418 S13: -0.1085 REMARK 3 S21: -0.1208 S22: -0.1710 S23: 0.1791 REMARK 3 S31: 0.0204 S32: 0.1015 S33: -0.0434 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 100 B 130 REMARK 3 ORIGIN FOR THE GROUP (A): 85.6380 41.2900 8.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.1975 REMARK 3 T33: 0.2130 T12: -0.0809 REMARK 3 T13: -0.0257 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.4421 L22: 4.1966 REMARK 3 L33: 8.6637 L12: -2.0975 REMARK 3 L13: 2.6716 L23: -4.6348 REMARK 3 S TENSOR REMARK 3 S11: 0.1911 S12: 0.3619 S13: -0.1060 REMARK 3 S21: -0.3785 S22: -0.1529 S23: 0.1634 REMARK 3 S31: 0.3736 S32: 0.0903 S33: -0.0382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1NNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 6 REMARK 6 THE PROTEIN WAS CLONED, EXPRESSED AND PURIFIED BY THE REMARK 6 SECSG PYROCOCCUS PROTEIN PRODUCTION GROUP (M.W.W.ADAMS, REMARK 6 P.S.BRERETON, M.IZUMI, F.E.JENNEY JR., H.-S.LEE, F.L. REMARK 6 POOLE II, C.SHAH, F.SUGAR) UNDER THE DIRECTION OF REMARK 6 M.W.W.ADAMS. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97243 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19657 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, CALCIUM ACETATE, IMIDAZOLE, REMARK 280 PH 8.0, MODIFIED MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.95900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.95900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.50050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.95900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.95900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.50050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.95900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.95900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.50050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.95900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.95900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.50050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -230.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -484.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 211.83600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.91800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CE NZ REMARK 470 LYS A 10 CD CE NZ REMARK 470 GLU A 34 CD OE1 OE2 REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 LYS A 93 CD CE NZ REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 GLU A 102 CD OE1 OE2 REMARK 470 GLU A 119 CD OE1 OE2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 127 CD CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 LYS A 137 CB CG CD CE NZ REMARK 470 LYS A 138 CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 LYS A 166 CD CE NZ REMARK 470 LYS B 4 CD CE NZ REMARK 470 LYS B 9 NZ REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 LYS B 43 CD CE NZ REMARK 470 ARG B 46 NE CZ NH1 NH2 REMARK 470 LYS B 68 NZ REMARK 470 GLU B 96 CD OE1 OE2 REMARK 470 LYS B 101 CD CE NZ REMARK 470 ARG B 105 CZ NH1 NH2 REMARK 470 LYS B 115 CE NZ REMARK 470 LYS B 123 CD CE NZ REMARK 470 LYS B 127 CD CE NZ REMARK 470 GLU B 129 CB CG CD OE1 OE2 REMARK 470 GLU B 132 CB CG CD OE1 OE2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 ILE B 136 CG1 CG2 CD1 REMARK 470 LYS B 137 CB CG CD CE NZ REMARK 470 LYS B 138 CB CG CD CE NZ REMARK 470 LYS B 166 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 151 -55.47 74.84 REMARK 500 ILE B 136 113.30 162.91 REMARK 500 ASP B 151 -47.60 67.68 REMARK 500 LYS B 164 -37.45 -34.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE2 REMARK 620 2 GLU A 19 OE1 56.8 REMARK 620 3 GLU A 52 OE2 79.2 135.1 REMARK 620 4 HIS A 55 ND1 96.1 101.1 91.0 REMARK 620 5 GLU B 114 OE1 144.2 87.4 135.6 91.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 GLU B 80 OE2 87.9 REMARK 620 3 GLU B 80 OE1 143.5 57.3 REMARK 620 4 GLU B 114 OE2 125.5 145.9 88.6 REMARK 620 5 HIS B 117 ND1 96.5 97.4 98.4 86.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 GLU A 80 OE2 55.6 REMARK 620 3 GLU A 114 OE2 139.0 83.9 REMARK 620 4 HIS A 117 ND1 103.9 99.7 87.8 REMARK 620 5 GLU B 52 OE2 88.6 142.4 128.6 100.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 114 OE1 REMARK 620 2 GLU B 19 OE2 84.7 REMARK 620 3 GLU B 19 OE1 135.6 54.0 REMARK 620 4 GLU B 52 OE1 130.6 140.1 86.4 REMARK 620 5 HIS B 55 ND1 97.7 100.5 104.6 93.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 142 SG REMARK 620 2 CYS A 145 SG 114.2 REMARK 620 3 CYS A 157 SG 116.6 93.8 REMARK 620 4 CYS A 160 SG 98.1 124.3 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 142 SG REMARK 620 2 CYS B 145 SG 115.8 REMARK 620 3 CYS B 157 SG 115.2 93.0 REMARK 620 4 CYS B 160 SG 98.4 124.8 110.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1210814-001 RELATED DB: TARGETDB DBREF 1NNQ A 1 171 UNP Q9UWP7 Q9UWP7_PYRFU 1 171 DBREF 1NNQ B 1 171 UNP Q9UWP7 Q9UWP7_PYRFU 1 171 SEQRES 1 A 171 MET VAL VAL LYS ARG THR MET THR LYS LYS PHE LEU GLU SEQRES 2 A 171 GLU ALA PHE ALA GLY GLU SER MET ALA HIS MET ARG TYR SEQRES 3 A 171 LEU ILE PHE ALA GLU LYS ALA GLU GLN GLU GLY PHE PRO SEQRES 4 A 171 ASN ILE ALA LYS LEU PHE ARG ALA ILE ALA TYR ALA GLU SEQRES 5 A 171 PHE VAL HIS ALA LYS ASN HIS PHE ILE ALA LEU GLY LYS SEQRES 6 A 171 LEU GLY LYS THR PRO GLU ASN LEU GLN MET GLY ILE GLU SEQRES 7 A 171 GLY GLU THR PHE GLU VAL GLU GLU MET TYR PRO VAL TYR SEQRES 8 A 171 ASN LYS ALA ALA GLU PHE GLN GLY GLU LYS GLU ALA VAL SEQRES 9 A 171 ARG THR THR HIS TYR ALA LEU GLU ALA GLU LYS ILE HIS SEQRES 10 A 171 ALA GLU LEU TYR ARG LYS ALA LYS GLU LYS ALA GLU LYS SEQRES 11 A 171 GLY GLU ASP ILE GLU ILE LYS LYS VAL TYR ILE CYS PRO SEQRES 12 A 171 ILE CYS GLY TYR THR ALA VAL ASP GLU ALA PRO GLU TYR SEQRES 13 A 171 CYS PRO VAL CYS GLY ALA PRO LYS GLU LYS PHE VAL VAL SEQRES 14 A 171 PHE GLU SEQRES 1 B 171 MET VAL VAL LYS ARG THR MET THR LYS LYS PHE LEU GLU SEQRES 2 B 171 GLU ALA PHE ALA GLY GLU SER MET ALA HIS MET ARG TYR SEQRES 3 B 171 LEU ILE PHE ALA GLU LYS ALA GLU GLN GLU GLY PHE PRO SEQRES 4 B 171 ASN ILE ALA LYS LEU PHE ARG ALA ILE ALA TYR ALA GLU SEQRES 5 B 171 PHE VAL HIS ALA LYS ASN HIS PHE ILE ALA LEU GLY LYS SEQRES 6 B 171 LEU GLY LYS THR PRO GLU ASN LEU GLN MET GLY ILE GLU SEQRES 7 B 171 GLY GLU THR PHE GLU VAL GLU GLU MET TYR PRO VAL TYR SEQRES 8 B 171 ASN LYS ALA ALA GLU PHE GLN GLY GLU LYS GLU ALA VAL SEQRES 9 B 171 ARG THR THR HIS TYR ALA LEU GLU ALA GLU LYS ILE HIS SEQRES 10 B 171 ALA GLU LEU TYR ARG LYS ALA LYS GLU LYS ALA GLU LYS SEQRES 11 B 171 GLY GLU ASP ILE GLU ILE LYS LYS VAL TYR ILE CYS PRO SEQRES 12 B 171 ILE CYS GLY TYR THR ALA VAL ASP GLU ALA PRO GLU TYR SEQRES 13 B 171 CYS PRO VAL CYS GLY ALA PRO LYS GLU LYS PHE VAL VAL SEQRES 14 B 171 PHE GLU HET ZN A 200 1 HET ZN A 201 1 HET ZN A 202 1 HET ZN B 200 1 HET ZN B 201 1 HET ZN B 202 1 HETNAM ZN ZINC ION FORMUL 3 ZN 6(ZN 2+) FORMUL 9 HOH *12(H2 O) HELIX 1 1 ARG A 5 GLU A 36 1 32 HELIX 2 2 PHE A 38 LEU A 63 1 26 HELIX 3 3 LYS A 68 GLU A 86 1 19 HELIX 4 4 GLU A 86 GLN A 98 1 13 HELIX 5 5 GLU A 100 LYS A 130 1 31 HELIX 6 6 PRO A 163 PHE A 167 5 5 HELIX 7 7 ARG B 5 GLU B 36 1 32 HELIX 8 8 PHE B 38 LEU B 63 1 26 HELIX 9 9 LYS B 68 GLU B 86 1 19 HELIX 10 10 GLU B 86 GLN B 98 1 13 HELIX 11 11 GLU B 100 LYS B 130 1 31 HELIX 12 12 PRO B 163 PHE B 167 5 5 SHEET 1 A 3 THR A 148 VAL A 150 0 SHEET 2 A 3 VAL A 139 ILE A 141 -1 N TYR A 140 O ALA A 149 SHEET 3 A 3 VAL A 168 PHE A 170 -1 O VAL A 168 N ILE A 141 SHEET 1 B 3 THR B 148 VAL B 150 0 SHEET 2 B 3 VAL B 139 ILE B 141 -1 N TYR B 140 O ALA B 149 SHEET 3 B 3 VAL B 168 PHE B 170 -1 O VAL B 168 N ILE B 141 LINK OE2 GLU A 19 ZN ZN A 202 1555 1555 2.29 LINK OE1 GLU A 19 ZN ZN A 202 1555 1555 2.32 LINK OE2 GLU A 52 ZN ZN A 202 1555 1555 2.20 LINK OE1 GLU A 52 ZN ZN B 201 1555 1555 1.98 LINK ND1 HIS A 55 ZN ZN A 202 1555 1555 2.51 LINK OE1 GLU A 80 ZN ZN A 201 1555 1555 2.41 LINK OE2 GLU A 80 ZN ZN A 201 1555 1555 2.35 LINK OE2 GLU A 114 ZN ZN A 201 1555 1555 2.14 LINK OE1 GLU A 114 ZN ZN B 202 1555 1555 2.03 LINK ND1 HIS A 117 ZN ZN A 201 1555 1555 2.47 LINK SG CYS A 142 ZN ZN A 200 1555 1555 2.23 LINK SG CYS A 145 ZN ZN A 200 1555 1555 2.28 LINK SG CYS A 157 ZN ZN A 200 1555 1555 2.28 LINK SG CYS A 160 ZN ZN A 200 1555 1555 2.30 LINK ZN ZN A 201 OE2 GLU B 52 1555 1555 2.04 LINK ZN ZN A 202 OE1 GLU B 114 1555 1555 2.06 LINK OE2 GLU B 19 ZN ZN B 202 1555 1555 2.50 LINK OE1 GLU B 19 ZN ZN B 202 1555 1555 2.34 LINK OE1 GLU B 52 ZN ZN B 202 1555 1555 2.25 LINK ND1 HIS B 55 ZN ZN B 202 1555 1555 2.27 LINK OE2 GLU B 80 ZN ZN B 201 1555 1555 2.33 LINK OE1 GLU B 80 ZN ZN B 201 1555 1555 2.25 LINK OE2 GLU B 114 ZN ZN B 201 1555 1555 2.15 LINK ND1 HIS B 117 ZN ZN B 201 1555 1555 2.48 LINK SG CYS B 142 ZN ZN B 200 1555 1555 2.28 LINK SG CYS B 145 ZN ZN B 200 1555 1555 2.34 LINK SG CYS B 157 ZN ZN B 200 1555 1555 2.35 LINK SG CYS B 160 ZN ZN B 200 1555 1555 2.32 SITE 1 AC1 4 CYS A 142 CYS A 145 CYS A 157 CYS A 160 SITE 1 AC2 4 GLU A 80 GLU A 114 HIS A 117 GLU B 52 SITE 1 AC3 5 GLU A 19 GLU A 52 HIS A 55 GLU B 114 SITE 2 AC3 5 ZN B 201 SITE 1 AC4 4 CYS B 142 CYS B 145 CYS B 157 CYS B 160 SITE 1 AC5 6 GLU A 52 ZN A 202 GLU B 80 GLU B 83 SITE 2 AC5 6 GLU B 114 HIS B 117 SITE 1 AC6 4 GLU A 114 GLU B 19 GLU B 52 HIS B 55 CRYST1 105.918 105.918 81.001 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009441 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012346 0.00000