HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-JAN-03 1NO5 TITLE STRUCTURE OF HI0073 FROM HAEMOPHILUS INFLUENZAE, THE NUCLEOTIDE TITLE 2 BINDING DOMAIN OF THE HI0073/HI0074 TWO PROTEIN NUCLEOTIDYL TITLE 3 TRANSFERASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN HI0073; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: HI0073; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET100/D-TOPO; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHI0073 KEYWDS HI0073, HI0074, STRUCTURAL GENOMICS, NUCLEOTIDYL TRANSFERASE, KEYWDS 2 STRUCTURE 2 FUNCTION PROJECT, S2F, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.LEHMANN,S.PULLALAREVU,A.GALKIN,W.KRAJEWSKI,M.A.WILLIS,A.HOWARD, AUTHOR 2 O.HERZBERG,STRUCTURE 2 FUNCTION PROJECT (S2F) REVDAT 5 14-FEB-24 1NO5 1 REMARK LINK REVDAT 4 13-JUL-11 1NO5 1 VERSN REVDAT 3 24-FEB-09 1NO5 1 VERSN REVDAT 2 30-AUG-05 1NO5 1 JRNL REVDAT 1 16-MAR-04 1NO5 0 JRNL AUTH C.LEHMANN,S.PULLALAREVU,W.KRAJEWSKI,M.A.WILLIS,A.GALKIN, JRNL AUTH 2 A.HOWARD,O.HERZBERG JRNL TITL STRUCTURE OF HI0073 FROM HAEMOPHILUS INFLUENZAE, THE JRNL TITL 2 NUCLEOTIDE-BINDING DOMAIN OF A TWO-PROTEIN NUCLEOTIDYL JRNL TITL 3 TRANSFERASE JRNL REF PROTEINS V. 60 807 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16028221 JRNL DOI 10.1002/PROT.20586 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.201 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.200 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2532 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 48448 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.194 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.194 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 2397 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 45314 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1646 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1975.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 1 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 7935 REMARK 3 NUMBER OF RESTRAINTS : 6841 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 ANGLE DISTANCES (A) : 0.034 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.027 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.050 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.065 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.014 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.105 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL SYSTEM REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% 2-PROPANOL, 0.1 M SODIUM REMARK 280 CACODYLATE, 0.2 M ZN(ACETATE)2, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.74000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.74000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -886.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 89.56000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 44.78000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 77.56124 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -872.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 89.56000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 44.78000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 77.56124 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 44.78000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 77.56124 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 30.74000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 30.74000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 89.56000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 30.74000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -281.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 30.74000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -279.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 89.56000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -205.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 PHE A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 106 REMARK 465 THR A 107 REMARK 465 VAL A 108 REMARK 465 GLU A 109 REMARK 465 LYS A 110 REMARK 465 PRO A 111 REMARK 465 THR A 112 REMARK 465 ALA A 113 REMARK 465 LEU A 114 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 LYS B 106 REMARK 465 THR B 107 REMARK 465 VAL B 108 REMARK 465 GLU B 109 REMARK 465 LYS B 110 REMARK 465 PRO B 111 REMARK 465 THR B 112 REMARK 465 ALA B 113 REMARK 465 LEU B 114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 33 CG - CD1 - CE1 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 36 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 SER A 53 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP A 63 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 77 NH1 - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 PHE B 4 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 PHE B 4 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE B 4 CB - CG - CD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG B 36 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 46 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 64 CD - NE - CZ ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG B 77 CD - NE - CZ ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG B 77 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 77 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP B 79 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG B 91 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 57 125.59 -36.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD1 REMARK 620 2 ASP A 48 OD2 96.8 REMARK 620 3 HOH A1102 O 89.2 173.9 REMARK 620 4 HOH A1103 O 82.8 90.3 91.8 REMARK 620 5 HOH A1104 O 167.6 89.8 84.5 86.7 REMARK 620 6 HOH A1105 O 93.4 89.4 89.0 176.1 97.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 511 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD2 REMARK 620 2 ASP A 48 OD1 97.1 REMARK 620 3 ASP A 79 OD2 94.8 89.6 REMARK 620 4 HOH A1105 O 91.7 91.6 173.2 REMARK 620 5 ASP B 73 OD2 86.4 176.0 92.1 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 541 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE2 REMARK 620 2 GLU A 71 OE2 94.4 REMARK 620 3 ASP B 46 OD2 86.8 89.4 REMARK 620 4 ASP B 48 OD1 88.2 172.0 98.3 REMARK 620 5 HOH B1106 O 170.4 91.5 85.8 87.0 REMARK 620 6 HOH B1107 O 92.9 93.9 176.7 78.4 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 551 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 67 OE2 REMARK 620 2 GLU A 67 OE1 60.8 REMARK 620 3 ASP B 46 OD1 95.3 91.7 REMARK 620 4 ASP B 48 OD2 103.7 164.4 92.1 REMARK 620 5 ASP B 79 OD2 152.6 93.7 95.4 101.0 REMARK 620 6 HOH B1108 O 84.8 86.2 177.6 90.2 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 521 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD1 REMARK 620 2 HOH A1269 O 158.0 REMARK 620 3 GLU B 12 OE2 92.4 92.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 561 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 88 OE2 REMARK 620 2 GLU A 92 OE2 128.8 REMARK 620 3 HOH A1110 O 103.2 100.1 REMARK 620 4 ASP B 8 OD1 98.4 111.9 114.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 571 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 67 OE2 REMARK 620 2 GLU B 71 OE2 124.1 REMARK 620 3 SO4 B 601 O3 105.3 111.9 REMARK 620 4 SO4 B 602 O3 113.7 94.9 105.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 89 OD1 REMARK 620 2 SO4 B 601 O4 147.6 REMARK 620 3 SO4 B 601 O1 154.9 57.1 REMARK 620 4 SO4 B 602 O1 88.0 107.3 75.4 REMARK 620 5 HOH B1230 O 63.6 148.8 91.8 61.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 521 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 541 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 561 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 571 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HI0073 RELATED DB: TARGETDB DBREF 1NO5 A 1 114 UNP P43933 Y073_HAEIN 1 114 DBREF 1NO5 B 1 114 UNP P43933 Y073_HAEIN 1 114 SEQRES 1 A 114 MET THR SER PHE ALA GLN LEU ASP ILE LYS SER GLU GLU SEQRES 2 A 114 LEU ALA ILE VAL LYS THR ILE LEU GLN GLN LEU VAL PRO SEQRES 3 A 114 ASP TYR THR VAL TRP ALA PHE GLY SER ARG VAL LYS GLY SEQRES 4 A 114 LYS ALA LYS LYS TYR SER ASP LEU ASP LEU ALA ILE ILE SEQRES 5 A 114 SER GLU GLU PRO LEU ASP PHE LEU ALA ARG ASP ARG LEU SEQRES 6 A 114 LYS GLU ALA PHE SER GLU SER ASP LEU PRO TRP ARG VAL SEQRES 7 A 114 ASP LEU LEU ASP TRP ALA THR THR SER GLU ASP PHE ARG SEQRES 8 A 114 GLU ILE ILE ARG LYS VAL TYR VAL VAL ILE GLN GLU LYS SEQRES 9 A 114 GLU LYS THR VAL GLU LYS PRO THR ALA LEU SEQRES 1 B 114 MET THR SER PHE ALA GLN LEU ASP ILE LYS SER GLU GLU SEQRES 2 B 114 LEU ALA ILE VAL LYS THR ILE LEU GLN GLN LEU VAL PRO SEQRES 3 B 114 ASP TYR THR VAL TRP ALA PHE GLY SER ARG VAL LYS GLY SEQRES 4 B 114 LYS ALA LYS LYS TYR SER ASP LEU ASP LEU ALA ILE ILE SEQRES 5 B 114 SER GLU GLU PRO LEU ASP PHE LEU ALA ARG ASP ARG LEU SEQRES 6 B 114 LYS GLU ALA PHE SER GLU SER ASP LEU PRO TRP ARG VAL SEQRES 7 B 114 ASP LEU LEU ASP TRP ALA THR THR SER GLU ASP PHE ARG SEQRES 8 B 114 GLU ILE ILE ARG LYS VAL TYR VAL VAL ILE GLN GLU LYS SEQRES 9 B 114 GLU LYS THR VAL GLU LYS PRO THR ALA LEU HET ZN A 501 1 HET ZN A 511 1 HET ZN A 521 1 HET ZN A 531 1 HET ZN A 561 1 HET GOL A 801 6 HET ZN B 541 1 HET ZN B 551 1 HET ZN B 571 1 HET SO4 B 601 5 HET SO4 B 602 5 HET NA B 701 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 8(ZN 2+) FORMUL 8 GOL C3 H8 O3 FORMUL 12 SO4 2(O4 S 2-) FORMUL 14 NA NA 1+ FORMUL 15 HOH *304(H2 O) HELIX 1 1 LYS A 10 VAL A 25 1 16 HELIX 2 2 GLY A 34 VAL A 37 5 4 HELIX 3 3 ASP A 58 SER A 72 1 15 HELIX 4 4 ALA A 84 THR A 86 5 3 HELIX 5 5 SER A 87 VAL A 97 1 11 HELIX 6 6 LYS B 10 VAL B 25 1 16 HELIX 7 7 ASP B 58 SER B 72 1 15 HELIX 8 8 ALA B 84 THR B 86 5 3 HELIX 9 9 SER B 87 VAL B 97 1 11 SHEET 1 A 4 VAL A 78 ASP A 82 0 SHEET 2 A 4 LEU A 47 ILE A 52 1 N LEU A 49 O LEU A 81 SHEET 3 A 4 THR A 29 PHE A 33 -1 N THR A 29 O ILE A 52 SHEET 4 A 4 VAL A 99 GLN A 102 -1 O ILE A 101 N VAL A 30 SHEET 1 B 4 VAL B 78 ASP B 82 0 SHEET 2 B 4 LEU B 47 ILE B 52 1 N LEU B 49 O LEU B 81 SHEET 3 B 4 THR B 29 PHE B 33 -1 N TRP B 31 O ALA B 50 SHEET 4 B 4 VAL B 99 GLN B 102 -1 O ILE B 101 N VAL B 30 LINK OD1 ASP A 46 ZN ZN A 501 1555 1555 2.07 LINK OD2 ASP A 46 ZN ZN A 511 1555 1555 2.05 LINK OD2 ASP A 48 ZN ZN A 501 1555 1555 2.06 LINK OD1 ASP A 48 ZN ZN A 511 1555 1555 2.13 LINK OE2 GLU A 67 ZN ZN B 541 6554 1555 2.20 LINK OE2 GLU A 67 ZN ZN B 551 6554 1555 1.97 LINK OE1 GLU A 67 ZN ZN B 551 6554 1555 2.26 LINK OE2 GLU A 71 ZN ZN B 541 6554 1555 2.00 LINK OD2 ASP A 79 ZN ZN A 511 1555 1555 2.02 LINK OD1 ASP A 79 ZN ZN A 521 1555 1555 2.06 LINK OE2 GLU A 88 ZN ZN A 561 1555 1555 1.84 LINK OE2 GLU A 92 ZN ZN A 561 1555 1555 1.46 LINK ZN ZN A 501 O HOH A1102 1555 1555 2.05 LINK ZN ZN A 501 O HOH A1103 1555 1555 2.15 LINK ZN ZN A 501 O HOH A1104 1555 1555 2.11 LINK ZN ZN A 501 O HOH A1105 1555 1555 1.89 LINK ZN ZN A 511 O HOH A1105 1555 1555 2.09 LINK ZN ZN A 511 OD2 ASP B 73 1555 2655 2.21 LINK ZN ZN A 521 O HOH A1269 1555 1555 2.56 LINK ZN ZN A 521 OE2 GLU B 12 1555 2655 2.14 LINK ZN ZN A 531 O HOH A1105 1555 1555 2.27 LINK ZN ZN A 561 O HOH A1110 1555 1555 2.34 LINK ZN ZN A 561 OD1 ASP B 8 1555 1555 2.02 LINK OD2 ASP B 46 ZN ZN B 541 1555 1555 2.00 LINK OD1 ASP B 46 ZN ZN B 551 1555 1555 2.08 LINK OD1 ASP B 48 ZN ZN B 541 1555 1555 2.18 LINK OD2 ASP B 48 ZN ZN B 551 1555 1555 1.98 LINK OE2 GLU B 67 ZN ZN B 571 1555 1555 1.70 LINK OE2 GLU B 71 ZN ZN B 571 1555 1555 1.96 LINK OD2 ASP B 79 ZN ZN B 551 1555 1555 1.89 LINK OD1 ASP B 89 NA NA B 701 2665 1555 2.48 LINK ZN ZN B 541 O HOH B1106 1555 1555 2.24 LINK ZN ZN B 541 O HOH B1107 1555 1555 2.17 LINK ZN ZN B 551 O HOH B1108 1555 1555 2.26 LINK ZN ZN B 571 O3 SO4 B 601 1555 1555 2.10 LINK ZN ZN B 571 O3 SO4 B 602 1555 1555 1.94 LINK O4 SO4 B 601 NA NA B 701 1555 1555 2.48 LINK O1 SO4 B 601 NA NA B 701 1555 1555 2.56 LINK O1 SO4 B 602 NA NA B 701 1555 1555 1.63 LINK NA NA B 701 O HOH B1230 1555 1555 2.59 SITE 1 AC1 7 ASP A 46 ASP A 48 ZN A 511 HOH A1102 SITE 2 AC1 7 HOH A1103 HOH A1104 HOH A1105 SITE 1 AC2 7 ASP A 46 ASP A 48 ASP A 79 ZN A 501 SITE 2 AC2 7 ZN A 531 HOH A1105 ASP B 73 SITE 1 AC3 3 ASP A 79 HOH A1269 GLU B 12 SITE 1 AC4 2 ZN A 511 HOH A1105 SITE 1 AC5 7 GLU A 67 GLU A 71 ASP B 46 ASP B 48 SITE 2 AC5 7 ZN B 551 HOH B1106 HOH B1107 SITE 1 AC6 6 GLU A 67 ASP B 46 ASP B 48 ASP B 79 SITE 2 AC6 6 ZN B 541 HOH B1108 SITE 1 AC7 4 GLU A 88 GLU A 92 HOH A1110 ASP B 8 SITE 1 AC8 4 GLU B 67 GLU B 71 SO4 B 601 SO4 B 602 SITE 1 AC9 7 LYS A 42 LYS A 43 GLU B 67 GLU B 71 SITE 2 AC9 7 ZN B 571 SO4 B 602 NA B 701 SITE 1 BC1 7 GLU B 67 GLU B 71 ASP B 89 ZN B 571 SITE 2 BC1 7 SO4 B 601 NA B 701 HOH B1230 SITE 1 BC2 4 ASP B 89 SO4 B 601 SO4 B 602 HOH B1230 SITE 1 BC3 5 ALA A 84 THR A 86 SER A 87 ARG A 91 SITE 2 BC3 5 HOH A1131 CRYST1 89.560 89.560 61.480 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011165 0.006446 0.000000 0.00000 SCALE2 0.000000 0.012893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016264 0.00000