data_1NPL # _entry.id 1NPL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1NPL RCSB RCSB008371 WWPDB D_1000008371 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NPL _pdbx_database_status.recvd_initial_deposition_date 1998-12-17 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sauerborn, M.K.' 1 'Wright, L.M.' 2 'Reynolds, C.D.' 3 'Grossmann, J.G.' 4 'Rizkallah, P.J.' 5 # _citation.id primary _citation.title ;Insights into carbohydrate recognition by Narcissus pseudonarcissus lectin: the crystal structure at 2 A resolution in complex with alpha1-3 mannobiose. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 290 _citation.page_first 185 _citation.page_last 199 _citation.year 1999 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10388566 _citation.pdbx_database_id_DOI 10.1006/jmbi.1999.2862 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sauerborn, M.K.' 1 ? primary 'Wright, L.M.' 2 ? primary 'Reynolds, C.D.' 3 ? primary 'Grossmann, J.G.' 4 ? primary 'Rizkallah, P.J.' 5 ? # _cell.entry_id 1NPL _cell.length_a 73.300 _cell.length_b 101.200 _cell.length_c 37.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NPL _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PROTEIN (AGGLUTININ)' 12209.545 1 ? ? ? 'FROM DAFFODIL PLANT FAMILY OF AMARYLLIDACEAE' 2 branched man 'alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose' 342.297 4 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 3 ? ? ? ? 4 water nat water 18.015 97 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'DAFFODIL LECTIN' 2 3alpha-alpha-mannobiose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DNILYSGETLSPGEFLNNGRYVFIMQEDCNLVLYDVDKPIWATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWASNTGGE NGNYVCVLQKDRNVVIYGTARWATGTNIH ; _entity_poly.pdbx_seq_one_letter_code_can ;DNILYSGETLSPGEFLNNGRYVFIMQEDCNLVLYDVDKPIWATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWASNTGGE NGNYVCVLQKDRNVVIYGTARWATGTNIH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ASN n 1 3 ILE n 1 4 LEU n 1 5 TYR n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 THR n 1 10 LEU n 1 11 SER n 1 12 PRO n 1 13 GLY n 1 14 GLU n 1 15 PHE n 1 16 LEU n 1 17 ASN n 1 18 ASN n 1 19 GLY n 1 20 ARG n 1 21 TYR n 1 22 VAL n 1 23 PHE n 1 24 ILE n 1 25 MET n 1 26 GLN n 1 27 GLU n 1 28 ASP n 1 29 CYS n 1 30 ASN n 1 31 LEU n 1 32 VAL n 1 33 LEU n 1 34 TYR n 1 35 ASP n 1 36 VAL n 1 37 ASP n 1 38 LYS n 1 39 PRO n 1 40 ILE n 1 41 TRP n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 THR n 1 46 GLY n 1 47 GLY n 1 48 LEU n 1 49 ASP n 1 50 ARG n 1 51 ARG n 1 52 CYS n 1 53 HIS n 1 54 LEU n 1 55 SER n 1 56 MET n 1 57 GLN n 1 58 SER n 1 59 ASP n 1 60 GLY n 1 61 ASN n 1 62 LEU n 1 63 VAL n 1 64 VAL n 1 65 TYR n 1 66 SER n 1 67 PRO n 1 68 ARG n 1 69 ASN n 1 70 ASN n 1 71 PRO n 1 72 ILE n 1 73 TRP n 1 74 ALA n 1 75 SER n 1 76 ASN n 1 77 THR n 1 78 GLY n 1 79 GLY n 1 80 GLU n 1 81 ASN n 1 82 GLY n 1 83 ASN n 1 84 TYR n 1 85 VAL n 1 86 CYS n 1 87 VAL n 1 88 LEU n 1 89 GLN n 1 90 LYS n 1 91 ASP n 1 92 ARG n 1 93 ASN n 1 94 VAL n 1 95 VAL n 1 96 ILE n 1 97 TYR n 1 98 GLY n 1 99 THR n 1 100 ALA n 1 101 ARG n 1 102 TRP n 1 103 ALA n 1 104 THR n 1 105 GLY n 1 106 THR n 1 107 ASN n 1 108 ILE n 1 109 HIS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name daffodil _entity_src_nat.pdbx_organism_scientific 'Narcissus pseudonarcissus' _entity_src_nat.pdbx_ncbi_taxonomy_id 39639 _entity_src_nat.genus Narcissus _entity_src_nat.species ? _entity_src_nat.strain 'DUTCH MASTER' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ BULBS _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code L16511 _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession 289871 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1NPL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 289871 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 132 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1NPL PHE A 15 ? GB 289871 TYR 38 conflict 15 1 1 1NPL ASN A 17 ? GB 289871 SER 40 conflict 17 2 1 1NPL ASN A 18 ? GB 289871 TYR 41 conflict 18 3 1 1NPL GLU A 27 ? GB 289871 GLN 50 conflict 27 4 1 1NPL ASP A 35 ? GB 289871 ASN 58 conflict 35 5 1 1NPL LEU A 48 ? GB 289871 VAL 71 conflict 48 6 1 1NPL ASP A 49 ? GB 289871 SER 72 conflict 49 7 1 1NPL ARG A 50 ? GB 289871 SER 73 conflict 50 8 1 1NPL ARG A 51 ? GB 289871 GLY 74 conflict 51 9 1 1NPL SER A 58 ? GB 289871 THR 81 conflict 58 10 1 1NPL PRO A 67 ? GB 289871 ARG 90 conflict 67 11 1 1NPL ARG A 68 ? GB 289871 LYS 91 conflict 68 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1NPL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 44 _exptl_crystal.description 'ROTATION METHOD' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;VAPOUR DIFFUSION, SITTING DROP, 10 MG/ML IN PBS CONTAINING UP TO 20 MM MANNOBIOSE, EQUILIBRATED AGAINST 40 - 60% AMMONIUM SULPHATE. 17 DEG. C, 4 - 6 DAYS, pH 6.5, vapor diffusion - sitting drop, temperature 290K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 277 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-09-19 _diffrn_detector.details 'MIRROR, MONOCHROMATOR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength 0.87 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1NPL _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 60.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 9490 _reflns.number_all ? _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value 0.07 _reflns.pdbx_netI_over_sigmaI 7.26 _reflns.B_iso_Wilson_estimate 20.1 _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs 0.273 _reflns_shell.pdbx_Rsym_value 0.276 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1NPL _refine.ls_number_reflns_obs 8984 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 98.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.267 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 457 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 27.6 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;DISORDERED REGION WERE REFINED IN TWO EQUAL CONFORMATIONS (50% OCCUPANCY EACH). NO ATTEMPT WAS MADE AT REFINING THEIR OCCUPANCIES. THE MODEL WAS CHECKED AGAINST ELECTRON DENSITY. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B 4.8 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 858 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 107 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1062 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d .015 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.037 0.040 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.039 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 2.04 2.0 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 2.82 3.0 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 2.08 2.0 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 3.06 3.0 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.015 ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.14 0.15 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.185 0.30 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.207 0.30 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 8.9 7.0 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 16.5 15.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 17.1 20.0 ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1NPL _struct.title 'MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM DAFFODIL (NARCISSUS PSEUDONARCISSUS) BULBS IN COMPLEX WITH MANNOSE-ALPHA1,3-MANNOSE' _struct.pdbx_descriptor 'PROTEIN (AGGLUTININ)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NPL _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'LECTIN, AGGLUTININ, MANNOBIOSE, MANNOSE-ALPHA1, 3-MANNOSE, DAFFODIL, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 29 A CYS 52 1_555 ? ? ? ? ? ? ? 2.002 ? ? covale1 covale both ? B MAN . O3 ? ? ? 1_555 B MAN . C1 ? ? B MAN 1 B MAN 2 1_555 ? ? ? ? ? ? ? 1.402 ? ? covale2 covale both ? C MAN . O3 ? ? ? 1_555 C MAN . C1 ? ? C MAN 1 C MAN 2 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale3 covale both ? D MAN . O3 ? ? ? 1_555 D MAN . C1 ? ? D MAN 1 D MAN 2 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale4 covale both ? E MAN . O3 A ? ? 1_555 E MAN . C1 A ? E MAN 1 E MAN 2 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale5 covale both ? E MAN . O3 B ? ? 1_555 E MAN . C1 B ? E MAN 1 E MAN 2 1_555 ? ? ? ? ? ? ? 1.415 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 98 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 98 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 THR _struct_mon_prot_cis.pdbx_label_seq_id_2 99 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 THR _struct_mon_prot_cis.pdbx_auth_seq_id_2 99 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 3 ? TYR A 5 ? ILE A 3 TYR A 5 A 2 VAL A 85 ? LEU A 88 ? VAL A 85 LEU A 88 A 3 VAL A 94 ? TYR A 97 ? VAL A 94 TYR A 97 B 1 PHE A 15 ? ASN A 18 ? PHE A 15 ASN A 18 B 2 TYR A 21 ? MET A 25 ? TYR A 21 MET A 25 B 3 LEU A 31 ? ASP A 35 ? LEU A 31 ASP A 35 B 4 LYS A 38 ? ALA A 42 ? LYS A 38 ALA A 42 C 1 HIS A 53 ? MET A 56 ? HIS A 53 MET A 56 C 2 LEU A 62 ? TYR A 65 ? LEU A 62 TYR A 65 C 3 PRO A 71 ? ALA A 74 ? PRO A 71 ALA A 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 4 ? O LEU A 4 N CYS A 86 ? N CYS A 86 A 2 3 O VAL A 85 ? O VAL A 85 N TYR A 97 ? N TYR A 97 B 1 2 O LEU A 16 ? O LEU A 16 N PHE A 23 ? N PHE A 23 B 2 3 O VAL A 22 ? O VAL A 22 N TYR A 34 ? N TYR A 34 B 3 4 O LEU A 33 ? O LEU A 33 N TRP A 41 ? N TRP A 41 C 1 2 O HIS A 53 ? O HIS A 53 N TYR A 65 ? N TYR A 65 C 2 3 O VAL A 64 ? O VAL A 64 N TRP A 73 ? N TRP A 73 # _database_PDB_matrix.entry_id 1NPL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1NPL _atom_sites.fract_transf_matrix[1][1] 0.013642 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009881 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026810 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _database_PDB_caveat.text 'MAN E 2 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 CYS 52 52 52 CYS CYS A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 TRP 73 73 73 TRP TRP A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 TRP 102 102 102 TRP TRP A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 HIS 109 109 109 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 PO4 1 150 1 PO4 PHO A . G 3 PO4 1 151 2 PO4 PHO A . H 3 PO4 1 152 3 PO4 PHO A . I 4 HOH 1 153 1 HOH HOH A . I 4 HOH 2 154 2 HOH HOH A . I 4 HOH 3 155 3 HOH HOH A . I 4 HOH 4 156 4 HOH HOH A . I 4 HOH 5 157 5 HOH HOH A . I 4 HOH 6 158 6 HOH HOH A . I 4 HOH 7 159 7 HOH HOH A . I 4 HOH 8 160 8 HOH HOH A . I 4 HOH 9 161 9 HOH HOH A . I 4 HOH 10 162 10 HOH HOH A . I 4 HOH 11 163 11 HOH HOH A . I 4 HOH 12 164 12 HOH HOH A . I 4 HOH 13 165 13 HOH HOH A . I 4 HOH 14 166 14 HOH HOH A . I 4 HOH 15 167 15 HOH HOH A . I 4 HOH 16 168 16 HOH HOH A . I 4 HOH 17 169 17 HOH HOH A . I 4 HOH 18 170 18 HOH HOH A . I 4 HOH 19 171 19 HOH HOH A . I 4 HOH 20 172 20 HOH HOH A . I 4 HOH 21 173 21 HOH HOH A . I 4 HOH 22 174 22 HOH HOH A . I 4 HOH 23 175 23 HOH HOH A . I 4 HOH 24 176 24 HOH HOH A . I 4 HOH 25 177 25 HOH HOH A . I 4 HOH 26 178 26 HOH HOH A . I 4 HOH 27 179 27 HOH HOH A . I 4 HOH 28 180 28 HOH HOH A . I 4 HOH 29 181 29 HOH HOH A . I 4 HOH 30 182 30 HOH HOH A . I 4 HOH 31 183 31 HOH HOH A . I 4 HOH 32 184 32 HOH HOH A . I 4 HOH 33 185 33 HOH HOH A . I 4 HOH 34 186 35 HOH HOH A . I 4 HOH 35 187 34 HOH HOH A . I 4 HOH 36 188 36 HOH HOH A . I 4 HOH 37 189 37 HOH HOH A . I 4 HOH 38 190 38 HOH HOH A . I 4 HOH 39 191 39 HOH HOH A . I 4 HOH 40 192 40 HOH HOH A . I 4 HOH 41 193 41 HOH HOH A . I 4 HOH 42 194 42 HOH HOH A . I 4 HOH 43 195 43 HOH HOH A . I 4 HOH 44 196 44 HOH HOH A . I 4 HOH 45 197 45 HOH HOH A . I 4 HOH 46 198 46 HOH HOH A . I 4 HOH 47 199 47 HOH HOH A . I 4 HOH 48 200 48 HOH HOH A . I 4 HOH 49 201 49 HOH HOH A . I 4 HOH 50 202 50 HOH HOH A . I 4 HOH 51 203 51 HOH HOH A . I 4 HOH 52 204 52 HOH HOH A . I 4 HOH 53 205 53 HOH HOH A . I 4 HOH 54 206 54 HOH HOH A . I 4 HOH 55 207 55 HOH HOH A . I 4 HOH 56 208 56 HOH HOH A . I 4 HOH 57 209 57 HOH HOH A . I 4 HOH 58 210 58 HOH HOH A . I 4 HOH 59 211 59 HOH HOH A . I 4 HOH 60 212 60 HOH HOH A . I 4 HOH 61 213 61 HOH HOH A . I 4 HOH 62 214 62 HOH HOH A . I 4 HOH 63 215 63 HOH HOH A . I 4 HOH 64 216 64 HOH HOH A . I 4 HOH 65 217 65 HOH HOH A . I 4 HOH 66 218 66 HOH HOH A . I 4 HOH 67 219 67 HOH HOH A . I 4 HOH 68 220 68 HOH HOH A . I 4 HOH 69 221 69 HOH HOH A . I 4 HOH 70 222 70 HOH HOH A . I 4 HOH 71 223 71 HOH HOH A . I 4 HOH 72 224 72 HOH HOH A . I 4 HOH 73 225 73 HOH HOH A . I 4 HOH 74 226 74 HOH HOH A . I 4 HOH 75 227 75 HOH HOH A . I 4 HOH 76 228 76 HOH HOH A . I 4 HOH 77 229 77 HOH HOH A . I 4 HOH 78 230 78 HOH HOH A . I 4 HOH 79 231 79 HOH HOH A . I 4 HOH 80 232 80 HOH HOH A . I 4 HOH 81 233 81 HOH HOH A . I 4 HOH 82 234 82 HOH HOH A . I 4 HOH 83 235 83 HOH HOH A . I 4 HOH 84 236 84 HOH HOH A . I 4 HOH 85 237 85 HOH HOH A . I 4 HOH 86 238 86 HOH HOH A . I 4 HOH 87 239 87 HOH HOH A . I 4 HOH 88 240 88 HOH HOH A . I 4 HOH 89 241 89 HOH HOH A . I 4 HOH 90 242 90 HOH HOH A . I 4 HOH 91 243 91 HOH HOH A . I 4 HOH 92 244 92 HOH HOH A . I 4 HOH 93 245 93 HOH HOH A . I 4 HOH 94 246 94 HOH HOH A . I 4 HOH 95 247 95 HOH HOH A . I 4 HOH 96 248 96 HOH HOH A . I 4 HOH 97 249 97 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900112 _pdbx_molecule_features.name 3alpha-alpha-mannobiose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Metabolism _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900112 B 2 PRD_900112 C 3 PRD_900112 D 4 PRD_900112 E # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS tetrameric 4 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,B,C,D,E,F,G,H,I 2 1,3 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 9390 ? 2 MORE -1 ? 2 'SSA (A^2)' 10180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 73.3000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 73.3000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 37.3000000000 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 37.3000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 154 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-12-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' entity_name_com 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_struct_assembly_gen 16 4 'Structure model' pdbx_struct_special_symmetry 17 4 'Structure model' pdbx_validate_chiral 18 4 'Structure model' pdbx_validate_close_contact 19 4 'Structure model' struct_asym 20 4 'Structure model' struct_conn 21 4 'Structure model' struct_ref_seq_dif 22 4 'Structure model' struct_site 23 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_chem_comp.name' 5 4 'Structure model' '_chem_comp.type' 6 4 'Structure model' '_entity.formula_weight' 7 4 'Structure model' '_entity.pdbx_description' 8 4 'Structure model' '_entity.pdbx_number_of_molecules' 9 4 'Structure model' '_entity.type' 10 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 11 4 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 12 4 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 13 4 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 14 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 15 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 16 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 17 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 AMoRE phasing . ? 3 REFMAC refinement . ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 49 ? ? NH2 A ARG 68 ? A 1.90 2 1 OD1 A ASN 44 ? ? O A HOH 248 ? ? 1.91 3 1 O A ASP 37 ? ? O A HOH 186 ? ? 2.02 4 1 OH A TYR 5 ? ? O1 A PO4 150 ? ? 2.04 5 1 O3 D MAN 1 ? ? O5 D MAN 2 ? ? 2.07 6 1 O6 D MAN 2 ? ? O A HOH 225 ? ? 2.08 7 1 N A SER 58 ? ? O2 A PO4 152 ? ? 2.17 8 1 O A HOH 242 ? ? O A HOH 243 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 ND2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 18 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O3 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 PO4 _pdbx_validate_symm_contact.auth_seq_id_2 150 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_656 _pdbx_validate_symm_contact.dist 1.96 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OE1 A GLU 14 ? ? CD A GLU 14 ? ? OE2 A GLU 14 ? ? 114.63 123.30 -8.67 1.20 N 2 1 CD A ARG 20 ? A NE A ARG 20 ? A CZ A ARG 20 ? A 134.16 123.60 10.56 1.40 N 3 1 CB A ASP 37 ? ? CG A ASP 37 ? ? OD1 A ASP 37 ? ? 126.60 118.30 8.30 0.90 N 4 1 NE A ARG 51 ? A CZ A ARG 51 ? A NH1 A ARG 51 ? A 125.40 120.30 5.10 0.50 N 5 1 NE A ARG 51 ? B CZ A ARG 51 ? B NH1 A ARG 51 ? B 124.78 120.30 4.48 0.50 N 6 1 NE A ARG 51 ? A CZ A ARG 51 ? A NH2 A ARG 51 ? A 116.87 120.30 -3.43 0.50 N 7 1 NE A ARG 51 ? B CZ A ARG 51 ? B NH2 A ARG 51 ? B 116.82 120.30 -3.48 0.50 N 8 1 CG A MET 56 ? ? SD A MET 56 ? ? CE A MET 56 ? ? 110.17 100.20 9.97 1.60 N 9 1 CB A TYR 65 ? ? CG A TYR 65 ? ? CD1 A TYR 65 ? ? 116.85 121.00 -4.15 0.60 N 10 1 CD A ARG 68 ? A NE A ARG 68 ? A CZ A ARG 68 ? A 134.24 123.60 10.64 1.40 N 11 1 NE A ARG 68 ? A CZ A ARG 68 ? A NH1 A ARG 68 ? A 123.58 120.30 3.28 0.50 N 12 1 NE A ARG 68 ? A CZ A ARG 68 ? A NH2 A ARG 68 ? A 116.47 120.30 -3.83 0.50 N 13 1 NE A ARG 68 ? B CZ A ARG 68 ? B NH2 A ARG 68 ? B 123.50 120.30 3.20 0.50 N 14 1 CD A ARG 101 ? A NE A ARG 101 ? A CZ A ARG 101 ? A 145.68 123.60 22.08 1.40 N 15 1 CD A ARG 101 ? B NE A ARG 101 ? B CZ A ARG 101 ? B 132.68 123.60 9.08 1.40 N 16 1 NE A ARG 101 ? A CZ A ARG 101 ? A NH1 A ARG 101 ? A 129.70 120.30 9.40 0.50 N 17 1 NE A ARG 101 ? A CZ A ARG 101 ? A NH2 A ARG 101 ? A 114.83 120.30 -5.47 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 36 ? ? 59.41 -116.59 2 1 ASP A 49 ? ? -173.65 -166.29 3 1 ASN A 69 ? ? 80.24 28.44 4 1 ARG A 92 ? ? 80.03 1.60 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 A E MAN 2 ? PLANAR . 2 1 C1 B E MAN 2 ? PLANAR . # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 MAN 1 B MAN 1 M MAN 1 n B 2 MAN 2 B MAN 2 M MAN 2 n C 2 MAN 1 C MAN 1 M MAN 11 n C 2 MAN 2 C MAN 2 M MAN 12 n D 2 MAN 1 D MAN 1 M MAN 21 n D 2 MAN 2 D MAN 2 M MAN 22 n E 2 MAN 1 E MAN 1 M MAN 31 n E 2 MAN 2 E MAN 2 M MAN 32 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-3DManpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a1122h-1a_1-5]/1-1/a3-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Manp]{[(3+1)][a-D-Manp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 MAN 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PHOSPHATE ION' PO4 4 water HOH #