HEADER BLOOD CLOTTING 21-JAN-03 1NQ9 TITLE CRYSTAL STRUCTURE OF ANTITHROMBIN IN THE PENTASACCHARIDE-BOUND TITLE 2 INTERMEDIATE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITHROMBIN-III; COMPND 3 CHAIN: I, L; COMPND 4 SYNONYM: ATIII; PRO0309; COMPND 5 OTHER_DETAILS: ALPHA GLYCOFORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BLOOD; SOURCE 6 TISSUE: PLASMA; SOURCE 7 OTHER_DETAILS: ALPHA GLYCOFORM PURIFIED FROM DISCARDED PLASMA KEYWDS THROMBIN; INHIBITION; HEPARIN ANALOGUE; SERINE PROTEASE INHIBITOR, KEYWDS 2 BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR J.A.HUNTINGTON,D.J.D.JOHNSON REVDAT 7 13-MAR-24 1NQ9 1 COMPND SOURCE REVDAT 6 16-AUG-23 1NQ9 1 HETSYN REVDAT 5 29-JUL-20 1NQ9 1 COMPND SOURCE REMARK HET REVDAT 5 2 1 HETNAM FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 11-OCT-17 1NQ9 1 REMARK REVDAT 3 13-JUL-11 1NQ9 1 VERSN REVDAT 2 24-FEB-09 1NQ9 1 VERSN REVDAT 1 30-SEP-03 1NQ9 0 JRNL AUTH D.J.D.JOHNSON,J.A.HUNTINGTON JRNL TITL CRYSTAL STRUCTURE OF ANTITHROMBIN IN A HEPARIN-BOUND JRNL TITL 2 INTERMEDIATE STATE JRNL REF BIOCHEMISTRY V. 42 8712 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12873131 JRNL DOI 10.1021/BI034524Y REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 33464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : R-FREE SET WAS IDENTICAL TO REMARK 3 THAT OF PDB ENTRIES 1E03, REMARK 3 1E04 AND 1E05 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1666 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 245 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 312 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.43 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4880 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADX REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33481 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 24.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : 0.57100 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1E05 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM FLUORIDE, TRIS, REMARK 280 GLYCEROL, 1,8-ANS , PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.38000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, B, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS I 1 REMARK 465 GLY I 2 REMARK 465 SER I 3 REMARK 465 PRO I 4 REMARK 465 VAL I 5 REMARK 465 GLU I 27 REMARK 465 LYS I 28 REMARK 465 LYS I 29 REMARK 465 ALA I 30 REMARK 465 THR I 31 REMARK 465 GLU I 32 REMARK 465 ASP I 33 REMARK 465 GLU I 34 REMARK 465 GLY I 35 REMARK 465 SER I 36 REMARK 465 GLU I 37 REMARK 465 GLN I 38 REMARK 465 ALA I 134 REMARK 465 ASN I 135 REMARK 465 LYS I 136 REMARK 465 ALA I 356 REMARK 465 GLU I 357 REMARK 465 GLY I 358 REMARK 465 ARG I 359 REMARK 465 ASP I 360 REMARK 465 LYS I 432 REMARK 465 HIS L 1 REMARK 465 GLY L 2 REMARK 465 SER L 3 REMARK 465 PRO L 4 REMARK 465 GLU L 27 REMARK 465 LYS L 28 REMARK 465 LYS L 29 REMARK 465 ALA L 30 REMARK 465 THR L 31 REMARK 465 GLU L 32 REMARK 465 ASP L 33 REMARK 465 GLU L 34 REMARK 465 GLY L 35 REMARK 465 ALA L 134 REMARK 465 ASN L 135 REMARK 465 ARG L 399 REMARK 465 VAL L 400 REMARK 465 VAL L 431 REMARK 465 LYS L 432 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS I 11 CG CD CE NZ REMARK 470 ILE I 15 CG1 CG2 CD1 REMARK 470 MET I 17 CG SD CE REMARK 470 LYS I 39 CG CD CE NZ REMARK 470 ARG I 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS I 53 CD CE NZ REMARK 470 LYS I 125 CD CE NZ REMARK 470 TYR I 131 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG I 132 NE CZ NH1 NH2 REMARK 470 LYS I 139 CD CE NZ REMARK 470 LYS I 150 CG CD CE NZ REMARK 470 LYS I 169 CD CE NZ REMARK 470 LYS I 176 CE NZ REMARK 470 GLU I 177 CG CD OE1 OE2 REMARK 470 GLU I 180 CG CD OE1 OE2 REMARK 470 GLN I 181 CG CD OE1 NE2 REMARK 470 LYS I 188 CG CD CE NZ REMARK 470 LYS I 193 CG CD CE NZ REMARK 470 GLU I 195 CG CD OE1 OE2 REMARK 470 GLU I 209 CB CG CD OE1 OE2 REMARK 470 LYS I 257 CG CD CE NZ REMARK 470 LYS I 297 CG CD CE NZ REMARK 470 GLU I 312 CD OE1 OE2 REMARK 470 GLU I 333 CG CD OE1 OE2 REMARK 470 GLU I 347 CG CD OE1 OE2 REMARK 470 LYS I 348 CG CD CE NZ REMARK 470 ARG L 13 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 37 CD OE1 OE2 REMARK 470 GLU L 42 CG CD OE1 OE2 REMARK 470 ARG L 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 133 CG CD CE NZ REMARK 470 LYS L 136 CG CD CE NZ REMARK 470 LYS L 228 CG CD CE NZ REMARK 470 LYS L 236 CD CE NZ REMARK 470 GLU L 245 CG CD OE1 OE2 REMARK 470 GLU L 289 CG CD OE1 OE2 REMARK 470 LYS L 290 CD CE NZ REMARK 470 LYS L 297 CG CD CE NZ REMARK 470 GLU L 312 CG CD OE1 OE2 REMARK 470 GLU L 357 CG CD OE1 OE2 REMARK 470 ARG L 393 NE CZ NH1 NH2 REMARK 470 PHE L 402 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS L 403 CD CE NZ REMARK 470 ARG L 406 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS I 8 -71.90 -64.80 REMARK 500 ASP I 14 -81.07 -58.71 REMARK 500 ILE I 40 138.03 -35.93 REMARK 500 ALA I 43 45.66 36.89 REMARK 500 ASN I 96 -136.12 62.19 REMARK 500 ASP I 109 2.27 -67.38 REMARK 500 TYR I 131 8.84 -64.27 REMARK 500 VAL I 141 111.89 -177.71 REMARK 500 SER I 151 -5.05 -58.95 REMARK 500 GLU I 205 -1.15 84.15 REMARK 500 ASN I 208 -139.34 -108.52 REMARK 500 ARG I 261 129.38 -178.44 REMARK 500 VAL I 263 -148.14 -94.50 REMARK 500 ASP I 277 -20.67 70.50 REMARK 500 GLU I 302 -70.93 -66.19 REMARK 500 ALA I 383 62.37 -111.24 REMARK 500 ARG I 399 152.50 -46.96 REMARK 500 ASN I 428 100.50 -160.87 REMARK 500 PRO L 12 -19.67 -47.07 REMARK 500 ASN L 18 95.68 35.25 REMARK 500 GLN L 38 -59.83 1.72 REMARK 500 ASP L 68 22.69 -68.68 REMARK 500 SER L 69 24.18 -154.83 REMARK 500 ASP L 72 -11.28 -47.33 REMARK 500 ASN L 96 -133.30 47.31 REMARK 500 THR L 110 25.28 -79.54 REMARK 500 ARG L 145 146.28 -174.41 REMARK 500 ASN L 178 43.60 -149.28 REMARK 500 ASP L 200 42.10 -149.41 REMARK 500 GLU L 205 -12.74 82.74 REMARK 500 VAL L 263 -161.38 -110.45 REMARK 500 GLU L 265 10.78 58.69 REMARK 500 GLU L 357 142.94 -173.78 REMARK 500 ASP L 361 130.54 -10.93 REMARK 500 ALA L 404 -124.67 -116.00 REMARK 500 ARG L 406 58.90 31.21 REMARK 500 PRO L 416 -67.45 -28.00 REMARK 500 LEU L 417 53.45 -115.63 REMARK 500 ASN L 418 70.45 14.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E03 RELATED DB: PDB REMARK 900 RELATED ID: 1E05 RELATED DB: PDB REMARK 900 RELATED ID: 1E04 RELATED DB: PDB REMARK 900 RELATED ID: 1OYH RELATED DB: PDB DBREF 1NQ9 I 1 432 UNP P01008 ANT3_HUMAN 33 464 DBREF 1NQ9 L 1 432 UNP P01008 ANT3_HUMAN 33 464 SEQRES 1 I 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 I 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 I 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 I 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 I 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 I 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 I 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 I 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 I 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 I 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 I 432 TYR ARG LYS ALA ASN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 I 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 I 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 I 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 I 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 I 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 I 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 I 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 I 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 I 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 I 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 I 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 I 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 I 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 I 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 I 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 I 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 I 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 I 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 I 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 I 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 I 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 I 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 I 432 CYS VAL LYS SEQRES 1 L 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 L 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 L 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 L 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 L 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 L 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 L 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 L 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 L 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 L 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 L 432 TYR ARG LYS ALA ASN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 L 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 L 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 L 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 L 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 L 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 L 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 L 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 L 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 L 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 L 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 L 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 L 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 L 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 L 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 L 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 L 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 L 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 L 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 L 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 L 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 L 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 L 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 L 432 CYS VAL LYS MODRES 1NQ9 ASN I 96 ASN GLYCOSYLATION SITE MODRES 1NQ9 ASN I 155 ASN GLYCOSYLATION SITE MODRES 1NQ9 ASN L 96 ASN GLYCOSYLATION SITE MODRES 1NQ9 ASN L 155 ASN GLYCOSYLATION SITE MODRES 1NQ9 ASN L 192 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET Z9L D 1 25 HET Z9K D 2 17 HET GU6 D 3 23 HET GU1 D 4 14 HET Z9H D 5 21 HET Z9L E 1 25 HET Z9K E 2 17 HET GU6 E 3 23 HET GU1 E 4 14 HET Z9H E 5 21 HET NAG I 801 14 HET NAG L 801 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM Z9L METHYL 2,3,6-TRI-O-SULFO-ALPHA-D-GLUCOPYRANOSIDE HETNAM Z9K 3-O-METHYL-2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM GU6 2,3,6-TRI-O-SULFO-ALPHA-D-GLUCOPYRANOSE HETNAM GU1 2,3-DI-O-METHYL-BETA-D-GLUCOPYRANURONIC ACID HETNAM Z9H 3,4-DI-O-METHYL-2,6-DI-O-SULFO-ALPHA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GU6 2,3,6-TRI-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE; 2,3,6-TRI- HETSYN 2 GU6 O-SULFO-ALPHA-D-GLUCOSE; 2,3,6-TRI-O-SULFO-D-GLUCOSE; HETSYN 3 GU6 2,3,6-TRI-O-SULFO-GLUCOSE HETSYN GU1 2,3-DI-O-METHYL-BETA-D-GLUCURONIC ACID; 2,3-DI-O- HETSYN 2 GU1 METHYL-D-GLUCURONIC ACID; 2,3-DI-O-METHYL-GLUCURONIC HETSYN 3 GU1 ACID FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 6 Z9L 2(C7 H14 O15 S3) FORMUL 6 Z9K 2(C7 H12 O10 S) FORMUL 6 GU6 2(C6 H12 O15 S3) FORMUL 6 GU1 2(C8 H14 O7) FORMUL 6 Z9H 2(C8 H16 O12 S2) FORMUL 10 HOH *89(H2 O) HELIX 1 1 ASN I 45 SER I 69 1 25 HELIX 2 2 SER I 79 PHE I 87 1 9 HELIX 3 3 PHE I 87 LEU I 92 1 6 HELIX 4 4 ASN I 96 PHE I 106 1 11 HELIX 5 5 SER I 112 GLN I 118 1 7 HELIX 6 6 GLN I 118 TYR I 131 1 14 HELIX 7 7 ASN I 155 TYR I 166 1 12 HELIX 8 8 ASP I 174 THR I 194 1 21 HELIX 9 9 SER I 230 THR I 234 5 5 HELIX 10 10 ALA I 264 GLY I 266 5 3 HELIX 11 11 SER I 291 LEU I 299 1 9 HELIX 12 12 THR I 300 LEU I 311 1 12 HELIX 13 13 LEU I 331 MET I 338 1 8 HELIX 14 14 VAL I 341 SER I 345 5 5 HELIX 15 15 ASN L 45 ASP L 68 1 24 HELIX 16 16 SER L 79 LEU L 92 1 14 HELIX 17 17 CYS L 95 PHE L 106 1 12 HELIX 18 18 SER L 112 GLN L 118 1 7 HELIX 19 19 GLN L 118 ARG L 132 1 15 HELIX 20 20 ASN L 155 GLY L 167 1 13 HELIX 21 21 ASP L 174 THR L 194 1 21 HELIX 22 22 ALA L 264 GLY L 266 5 3 HELIX 23 23 LEU L 292 LEU L 299 1 8 HELIX 24 24 THR L 300 LEU L 311 1 12 HELIX 25 25 LEU L 331 MET L 338 1 8 HELIX 26 26 VAL L 341 SER L 345 5 5 SHEET 1 A 4 VAL I 400 LYS I 403 0 SHEET 2 A 4 GLU I 312 PRO I 321 1 N HIS I 319 O PHE I 402 SHEET 3 A 4 SER I 246 ARG I 262 -1 N MET I 252 O MET I 320 SHEET 4 A 4 ARG I 235 TYR I 240 -1 N ARG I 235 O MET I 251 SHEET 1 B 8 VAL I 400 LYS I 403 0 SHEET 2 B 8 GLU I 312 PRO I 321 1 N HIS I 319 O PHE I 402 SHEET 3 B 8 SER I 246 ARG I 262 -1 N MET I 252 O MET I 320 SHEET 4 B 8 GLN I 268 PRO I 273 -1 O VAL I 269 N ARG I 261 SHEET 5 B 8 ILE I 279 LEU I 285 -1 O LEU I 285 N GLN I 268 SHEET 6 B 8 PHE I 408 GLU I 414 -1 O ARG I 413 N THR I 280 SHEET 7 B 8 THR I 419 VAL I 426 -1 O VAL I 426 N PHE I 408 SHEET 8 B 8 ILE I 76 LEU I 78 -1 N ILE I 76 O ARG I 425 SHEET 1 C 5 GLN I 171 LEU I 173 0 SHEET 2 C 5 LYS I 139 ASP I 149 1 N GLY I 148 O LEU I 173 SHEET 3 C 5 LEU I 213 LEU I 224 -1 O VAL I 214 N PHE I 147 SHEET 4 C 5 ASP I 366 VAL I 375 1 O ASP I 366 N LEU I 215 SHEET 5 C 5 PHE I 323 SER I 330 -1 N PHE I 323 O VAL I 375 SHEET 1 D 4 GLN I 171 LEU I 173 0 SHEET 2 D 4 LYS I 139 ASP I 149 1 N GLY I 148 O LEU I 173 SHEET 3 D 4 LEU I 213 LEU I 224 -1 O VAL I 214 N PHE I 147 SHEET 4 D 4 GLY I 379 SER I 380 -1 O SER I 380 N GLY I 223 SHEET 1 E 4 ALA I 387 ILE I 390 0 SHEET 2 E 4 GLU L 312 PRO L 321 1 O HIS L 319 N VAL I 389 SHEET 3 E 4 SER L 246 ARG L 262 -1 N GLN L 254 O VAL L 318 SHEET 4 E 4 ARG L 235 TYR L 240 -1 N ARG L 235 O MET L 251 SHEET 1 F 8 ALA I 387 ILE I 390 0 SHEET 2 F 8 GLU L 312 PRO L 321 1 O HIS L 319 N VAL I 389 SHEET 3 F 8 SER L 246 ARG L 262 -1 N GLN L 254 O VAL L 318 SHEET 4 F 8 GLN L 268 PRO L 273 -1 O VAL L 269 N ARG L 261 SHEET 5 F 8 ILE L 279 LEU L 285 -1 O MET L 281 N LEU L 272 SHEET 6 F 8 PHE L 408 GLU L 414 -1 O PHE L 411 N VAL L 282 SHEET 7 F 8 THR L 419 VAL L 426 -1 O PHE L 422 N ILE L 412 SHEET 8 F 8 ILE L 76 LEU L 78 -1 N ILE L 76 O ARG L 425 SHEET 1 G 6 LYS L 169 LEU L 173 0 SHEET 2 G 6 LYS L 139 ASP L 149 1 N LEU L 146 O LYS L 169 SHEET 3 G 6 LEU L 213 LEU L 224 -1 O TYR L 220 N VAL L 141 SHEET 4 G 6 GLY L 379 ILE L 390 -1 O ALA L 382 N PHE L 221 SHEET 5 G 6 VAL L 364 VAL L 375 -1 N PHE L 372 O ALA L 383 SHEET 6 G 6 PHE L 323 SER L 330 -1 N PHE L 323 O VAL L 375 SHEET 1 H 2 THR L 153 PHE L 154 0 SHEET 2 H 2 VAL L 355 GLU L 357 -1 O GLU L 357 N THR L 153 SSBOND 1 CYS I 8 CYS I 128 1555 1555 2.04 SSBOND 2 CYS I 21 CYS I 95 1555 1555 2.04 SSBOND 3 CYS I 247 CYS I 430 1555 1555 2.04 SSBOND 4 CYS L 8 CYS L 128 1555 1555 2.04 SSBOND 5 CYS L 21 CYS L 95 1555 1555 2.04 SSBOND 6 CYS L 247 CYS L 430 1555 1555 2.03 LINK ND2 ASN I 96 C1 NAG I 801 1555 1555 1.45 LINK ND2 ASN I 155 C1 NAG A 1 1555 1555 1.45 LINK ND2 ASN L 96 C1 NAG L 801 1555 1555 1.45 LINK ND2 ASN L 155 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN L 192 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.39 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 Z9L D 1 C1 Z9K D 2 1555 1555 1.41 LINK O4 Z9K D 2 C1 GU6 D 3 1555 1555 1.45 LINK O4 GU6 D 3 C1 GU1 D 4 1555 1555 1.41 LINK O4 GU1 D 4 C1 Z9H D 5 1555 1555 1.43 LINK O4 Z9L E 1 C1 Z9K E 2 1555 1555 1.42 LINK O4 Z9K E 2 C1 GU6 E 3 1555 1555 1.45 LINK O4 GU6 E 3 C1 GU1 E 4 1555 1555 1.39 LINK O4 GU1 E 4 C1 Z9H E 5 1555 1555 1.43 CISPEP 1 VAL I 415 PRO I 416 0 0.67 CRYST1 69.679 86.760 96.921 90.00 109.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014352 0.000000 0.005093 0.00000 SCALE2 0.000000 0.011526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010948 0.00000