HEADER HYDROLASE 24-JAN-03 1NRH OBSLTE 24-AUG-04 1NRH 1U8X TITLE CRYSTAL STRUCTURE OF GLVA GENE PRODUCT FROM BACILLUS TITLE 2 SUBTILIS, A METAL-REQUIRING, NAD-DEPENDENT 6-PHOSPHO-ALPHA- TITLE 3 GLUCOSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE-6'-PHOSPHATE GLUCOSIDASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: 6-PHOSPHO-ALPHA-D-GLUCOSIDASE, 6-PHOSPHORYL-O- COMPND 5 ALPHA-D-GLUCOPYRANOSYL:PHOSPHOGLUCOHYDROLASE; COMPND 6 EC: 3.2.1.122; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENE: GLVA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG KEYWDS STRUCTURAL GENOMICS, GLUCOSIDASE, NAD-DEPENDENT EXPDTA X-RAY DIFFRACTION AUTHOR MIDWEST CENTER OF STRUCTURAL GENOMICS REVDAT 3 24-AUG-04 1NRH 1 OBSLTE REVDAT 2 25-NOV-03 1NRH 1 DBREF REVDAT 1 18-NOV-03 1NRH 0 JRNL AUTH MIDWEST CENTER OF STRUCTURAL GENOMICS JRNL TITL CRYSTAL STRUCTURE OF GLVA GENE PRODUCT FROM JRNL TITL 2 BACILLUS SUBTILIS, A METAL-REQUIRING, JRNL TITL 3 NAD-DEPENDENT 6-PHOSPHO-ALPHA-GLUCOSIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 33021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3655 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 3673 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75000 REMARK 3 B22 (A**2) : 3.13000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.269 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3593 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3212 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4878 ; 1.450 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7503 ; 0.951 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3955 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 696 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 874 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3853 ; 0.234 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2068 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.428 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2176 ; 0.761 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3519 ; 1.437 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1417 ; 2.236 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1359 ; 3.633 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 0 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 3 X 169 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7917 80.7128 23.1507 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.1121 REMARK 3 T33: 0.1825 T12: 0.0336 REMARK 3 T13: 0.0281 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 0.4249 L22: 0.5554 REMARK 3 L33: 0.5525 L12: -0.0429 REMARK 3 L13: -0.1003 L23: -0.2178 REMARK 3 S TENSOR REMARK 3 S11: -0.1204 S12: -0.2608 S13: -0.3518 REMARK 3 S21: 0.0805 S22: 0.0207 S23: -0.1068 REMARK 3 S31: 0.1884 S32: 0.0367 S33: 0.0997 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 170 X 271 REMARK 3 RESIDUE RANGE : X 320 X 367 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6019 103.2792 22.1842 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.1405 REMARK 3 T33: 0.0518 T12: 0.0476 REMARK 3 T13: -0.0186 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.5215 L22: 0.5666 REMARK 3 L33: 0.7255 L12: 0.0186 REMARK 3 L13: -0.0747 L23: 0.0562 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: -0.3799 S13: -0.0615 REMARK 3 S21: 0.1197 S22: 0.0259 S23: -0.0402 REMARK 3 S31: -0.0233 S32: 0.0924 S33: 0.0186 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 272 X 319 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9945 85.2382 28.7332 REMARK 3 T TENSOR REMARK 3 T11: 0.3464 T22: 0.3845 REMARK 3 T33: 0.3247 T12: -0.0372 REMARK 3 T13: -0.0525 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: 0.1291 L22: 1.1396 REMARK 3 L33: 3.3167 L12: 0.2613 REMARK 3 L13: -1.0932 L23: -2.7289 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: -0.2770 S13: -0.2814 REMARK 3 S21: 0.0647 S22: -0.1488 S23: -0.3089 REMARK 3 S31: 0.1669 S32: 0.1538 S33: 0.2438 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 368 X 444 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2951 90.5087 2.1020 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.0384 REMARK 3 T33: 0.1134 T12: 0.0104 REMARK 3 T13: 0.0458 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.7952 L22: 0.2935 REMARK 3 L33: 0.6193 L12: -0.0944 REMARK 3 L13: -0.0241 L23: -0.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: 0.0244 S13: -0.1167 REMARK 3 S21: -0.0668 S22: 0.0312 S23: -0.0561 REMARK 3 S31: 0.0870 S32: 0.0463 S33: 0.0506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1NRH COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JAN-2003. REMARK 100 THE RCSB ID CODE IS RCSB018142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-2002 REMARK 200 TEMPERATURE (KELVIN) : 77.4 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SYNCHROTRON REMARK 200 BEAMLINE : APS-DNDCAT REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791401 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : MARCCD REMARK 200 DETECTOR MANUFACTURER : MAR RESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: AUTO-BUILT MODEL FROM RESOLVE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 4000, 0.1M TRIS, 0.2M REMARK 280 MGCL2, 10% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 1/2+X,1/2+Y,1/2+Z REMARK 290 6555 1/2-X,1/2-Y,1/2+Z REMARK 290 7555 1/2-X,1/2+Y,1/2-Z REMARK 290 8555 1/2+X,1/2-Y,1/2-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.30200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.00850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.37400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.30200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.00850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.37400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.30200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.00850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.37400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.30200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.00850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.37400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE X -22 REMARK 465 HIS X -21 REMARK 465 HIS X -20 REMARK 465 HIS X -19 REMARK 465 HIS X -18 REMARK 465 HIS X -17 REMARK 465 HIS X -16 REMARK 465 SER X -15 REMARK 465 SER X -14 REMARK 465 GLY X -13 REMARK 465 VAL X -12 REMARK 465 ASP X -11 REMARK 465 LEU X -10 REMARK 465 GLY X -9 REMARK 465 THR X -8 REMARK 465 GLU X -7 REMARK 465 ASN X -6 REMARK 465 LEU X -5 REMARK 465 TYR X -4 REMARK 465 PHE X -3 REMARK 465 GLN X -2 REMARK 465 SER X -1 REMARK 465 ASN X 0 REMARK 465 MSE X 1 REMARK 465 LYS X 2 REMARK 465 GLU X 235 REMARK 465 ALA X 236 REMARK 465 GLU X 237 REMARK 465 ALA X 238 REMARK 465 VAL X 239 REMARK 465 GLU X 240 REMARK 465 ALA X 241 REMARK 465 THR X 446 REMARK 465 ARG X 447 REMARK 465 ILE X 448 REMARK 465 SER X 449 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O ASN X 244 O HOH 143 2.10 REMARK 500 OE2 GLU X 359 O HOH 35 2.16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH 29 O HOH 29 4575 1.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA X 410 CA ALA X 410 CB 0.073 REMARK 500 PRO X 445 CB PRO X 445 CG -0.080 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE X 298 SER X 299 144.81 REMARK 500 GLU X 311 ASN X 312 -144.00 DBREF 1NRH X 1 449 UNP P54716 GLVA_BACSU 1 449 SEQADV 1NRH MSE X -22 UNP P54716 HIS TAG SEQADV 1NRH HIS X -21 UNP P54716 HIS TAG SEQADV 1NRH HIS X -20 UNP P54716 HIS TAG SEQADV 1NRH HIS X -19 UNP P54716 HIS TAG SEQADV 1NRH HIS X -18 UNP P54716 HIS TAG SEQADV 1NRH HIS X -17 UNP P54716 HIS TAG SEQADV 1NRH HIS X -16 UNP P54716 HIS TAG SEQADV 1NRH SER X -15 UNP P54716 CLONING ARTIFACT SEQADV 1NRH SER X -14 UNP P54716 CLONING ARTIFACT SEQADV 1NRH GLY X -13 UNP P54716 CLONING ARTIFACT SEQADV 1NRH VAL X -12 UNP P54716 CLONING ARTIFACT SEQADV 1NRH ASP X -11 UNP P54716 CLONING ARTIFACT SEQADV 1NRH LEU X -10 UNP P54716 CLONING ARTIFACT SEQADV 1NRH GLY X -9 UNP P54716 CLONING ARTIFACT SEQADV 1NRH THR X -8 UNP P54716 CLONING ARTIFACT SEQADV 1NRH GLU X -7 UNP P54716 CLONING ARTIFACT SEQADV 1NRH ASN X -6 UNP P54716 CLONING ARTIFACT SEQADV 1NRH LEU X -5 UNP P54716 CLONING ARTIFACT SEQADV 1NRH TYR X -4 UNP P54716 CLONING ARTIFACT SEQADV 1NRH PHE X -3 UNP P54716 CLONING ARTIFACT SEQADV 1NRH GLN X -2 UNP P54716 CLONING ARTIFACT SEQADV 1NRH SER X -1 UNP P54716 CLONING ARTIFACT SEQADV 1NRH ASN X 0 UNP P54716 CLONING ARTIFACT SEQADV 1NRH MSE X 24 UNP P54716 MET 1 MODIFIED RESIDUE SEQADV 1NRH MSE X 47 UNP P54716 MET 24 MODIFIED RESIDUE SEQADV 1NRH MSE X 107 UNP P54716 MET 84 MODIFIED RESIDUE SEQADV 1NRH MSE X 117 UNP P54716 MET 94 MODIFIED RESIDUE SEQADV 1NRH MSE X 145 UNP P54716 MET 122 MODIFIED RESIDUE SEQADV 1NRH MSE X 158 UNP P54716 MET 135 MODIFIED RESIDUE SEQADV 1NRH MSE X 167 UNP P54716 MET 144 MODIFIED RESIDUE SEQADV 1NRH MSE X 196 UNP P54716 MET 173 MODIFIED RESIDUE SEQADV 1NRH MSE X 204 UNP P54716 MET 181 MODIFIED RESIDUE SEQADV 1NRH MSE X 216 UNP P54716 MET 193 MODIFIED RESIDUE SEQADV 1NRH MSE X 241 UNP P54716 MET 218 MODIFIED RESIDUE SEQADV 1NRH MSE X 298 UNP P54716 MET 275 MODIFIED RESIDUE SEQADV 1NRH MSE X 313 UNP P54716 MET 290 MODIFIED RESIDUE SEQADV 1NRH MSE X 326 UNP P54716 MET 303 MODIFIED RESIDUE SEQADV 1NRH MSE X 362 UNP P54716 MET 339 MODIFIED RESIDUE SEQADV 1NRH MSE X 380 UNP P54716 MET 357 MODIFIED RESIDUE SEQADV 1NRH MSE X 408 UNP P54716 MET 385 MODIFIED RESIDUE SEQRES 1 X 472 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 X 472 GLY THR GLU ASN LEU TYR PHE GLN SER ASN MSE LYS LYS SEQRES 3 X 472 LYS SER PHE SER ILE VAL ILE ALA GLY GLY GLY SER THR SEQRES 4 X 472 PHE THR PRO GLY ILE VAL LEU MSE LEU LEU ASP HIS LEU SEQRES 5 X 472 GLU GLU PHE PRO ILE ARG LYS LEU LYS LEU TYR ASP ASN SEQRES 6 X 472 ASP LYS GLU ARG GLN ASP ARG ILE ALA GLY ALA CYS ASP SEQRES 7 X 472 VAL PHE ILE ARG GLU LYS ALA PRO ASP ILE GLU PHE ALA SEQRES 8 X 472 ALA THR THR ASP PRO GLU GLU ALA PHE THR ASP VAL ASP SEQRES 9 X 472 PHE VAL MSE ALA HIS ILE ARG VAL GLY LYS TYR ALA MSE SEQRES 10 X 472 ARG ALA LEU ASP GLU GLN ILE PRO LEU LYS TYR GLY VAL SEQRES 11 X 472 VAL GLY GLN GLU THR CYS GLY PRO GLY GLY ILE ALA TYR SEQRES 12 X 472 GLY MSE ARG SER ILE GLY GLY VAL LEU GLU ILE LEU ASP SEQRES 13 X 472 TYR MSE GLU LYS TYR SER PRO ASP ALA TRP MSE LEU ASN SEQRES 14 X 472 TYR SER ASN PRO ALA ALA ILE VAL ALA GLU ALA THR ARG SEQRES 15 X 472 ARG LEU ARG PRO ASN SER LYS ILE LEU ASN ILE CYS ASP SEQRES 16 X 472 MSE PRO VAL GLY ILE GLU ASP ARG MSE ALA GLN ILE LEU SEQRES 17 X 472 GLY LEU SER SER ARG LYS GLU MSE LYS VAL ARG TYR TYR SEQRES 18 X 472 GLY LEU ASN HIS PHE GLY TRP TRP THR SER ILE GLN ASP SEQRES 19 X 472 GLN GLU GLY ASN ASP LEU MSE PRO LYS LEU LYS GLU HIS SEQRES 20 X 472 VAL SER GLN TYR GLY TYR ILE PRO LYS THR GLU ALA GLU SEQRES 21 X 472 ALA VAL GLU ALA SER TRP ASN ASP THR PHE ALA LYS ALA SEQRES 22 X 472 ARG ASP VAL GLN ALA ALA ASP PRO ASP THR LEU PRO ASN SEQRES 23 X 472 THR TYR LEU GLN TYR TYR LEU PHE PRO ASP ASP MSE VAL SEQRES 24 X 472 LYS LYS SER ASN PRO ASN HIS THR ARG ALA ASN GLU VAL SEQRES 25 X 472 MSE GLU GLY ARG GLU ALA PHE ILE PHE SER GLN CYS ASP SEQRES 26 X 472 MSE ILE THR ARG GLU GLN SER SER GLU ASN SER GLU ILE SEQRES 27 X 472 LYS ILE ASP ASP HIS ALA SER TYR ILE VAL ASP LEU ALA SEQRES 28 X 472 ARG ALA ILE ALA TYR ASN THR GLY GLU ARG MSE LEU LEU SEQRES 29 X 472 ILE VAL GLU ASN ASN GLY ALA ILE ALA ASN PHE ASP PRO SEQRES 30 X 472 THR ALA MSE VAL GLU VAL PRO CYS ILE VAL GLY SER ASN SEQRES 31 X 472 GLY PRO GLU PRO ILE THR VAL GLY THR ILE PRO GLN PHE SEQRES 32 X 472 GLN LYS GLY LEU MSE GLU GLN GLN VAL SER VAL GLU LYS SEQRES 33 X 472 LEU THR VAL GLU ALA TRP ALA GLU LYS SER PHE GLN LYS SEQRES 34 X 472 LEU TRP GLN ALA LEU ILE LEU SER LYS THR VAL PRO ASN SEQRES 35 X 472 ALA ARG VAL ALA ARG LEU ILE LEU GLU ASP LEU VAL GLU SEQRES 36 X 472 ALA ASN LYS ASP PHE TRP PRO GLU LEU ASP GLN SER PRO SEQRES 37 X 472 THR ARG ILE SER MODRES 1NRH MSE X 24 MET SELENOMETHIONINE MODRES 1NRH MSE X 84 MET SELENOMETHIONINE MODRES 1NRH MSE X 94 MET SELENOMETHIONINE MODRES 1NRH MSE X 122 MET SELENOMETHIONINE MODRES 1NRH MSE X 135 MET SELENOMETHIONINE MODRES 1NRH MSE X 144 MET SELENOMETHIONINE MODRES 1NRH MSE X 173 MET SELENOMETHIONINE MODRES 1NRH MSE X 181 MET SELENOMETHIONINE MODRES 1NRH MSE X 193 MET SELENOMETHIONINE MODRES 1NRH MSE X 218 MET SELENOMETHIONINE MODRES 1NRH MSE X 275 MET SELENOMETHIONINE MODRES 1NRH MSE X 290 MET SELENOMETHIONINE MODRES 1NRH MSE X 303 MET SELENOMETHIONINE MODRES 1NRH MSE X 339 MET SELENOMETHIONINE MODRES 1NRH MSE X 357 MET SELENOMETHIONINE MODRES 1NRH MSE X 385 MET SELENOMETHIONINE HET MSE X 24 8 HET MSE X 84 8 HET MSE X 94 8 HET MSE X 122 8 HET MSE X 135 8 HET MSE X 144 8 HET MSE X 173 8 HET MSE X 181 8 HET MSE X 193 8 HET MSE X 218 8 HET MSE X 275 8 HET MSE X 290 8 HET MSE X 303 8 HET MSE X 339 8 HET MSE X 357 8 HET MSE X 385 8 HET G6P 902 16 HET MN 700 1 HET NAD 900 44 HETNAM MSE SELENOMETHIONINE HETNAM G6P ALPHA-D-GLUCOSE-6-PHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 2 G6P C6 H13 O9 P FORMUL 3 MN MN 2+ FORMUL 4 NAD C21 H27 N7 O14 P2 FORMUL 5 HOH *163(H2 O1) HELIX 1 1 PHE X 17 HIS X 28 1 12 HELIX 2 2 ASP X 43 ALA X 62 1 20 HELIX 3 3 ASP X 72 THR X 78 1 7 HELIX 4 4 GLY X 90 LYS X 104 1 15 HELIX 5 5 CYS X 113 SER X 139 1 27 HELIX 6 6 PRO X 150 ARG X 162 1 13 HELIX 7 7 ASP X 172 GLY X 186 1 15 HELIX 8 8 SER X 189 LYS X 191 5 3 HELIX 9 9 LEU X 217 GLY X 229 1 13 HELIX 10 10 ASP X 245 ALA X 256 1 12 HELIX 11 11 LEU X 266 PHE X 271 1 6 HELIX 12 12 PHE X 271 SER X 279 1 9 HELIX 13 13 THR X 284 ARG X 293 1 10 HELIX 14 14 ARG X 293 PHE X 298 1 6 HELIX 15 15 GLN X 300 GLN X 308 1 9 HELIX 16 16 ASP X 318 HIS X 320 5 3 HELIX 17 17 ALA X 321 ASN X 334 1 14 HELIX 18 18 PRO X 378 LYS X 402 1 25 HELIX 19 19 SER X 403 SER X 414 1 12 HELIX 20 20 ASN X 419 ASN X 434 1 16 SHEET 1 A 6 GLU X 66 THR X 70 0 SHEET 2 A 6 ILE X 34 TYR X 40 1 N LEU X 37 O GLU X 66 SHEET 3 A 6 PHE X 6 ALA X 11 1 N ILE X 10 O LYS X 38 SHEET 4 A 6 PHE X 82 ALA X 85 1 O MSE X 84 N VAL X 9 SHEET 5 A 6 TRP X 143 ASN X 146 1 O LEU X 145 N VAL X 83 SHEET 6 A 6 ILE X 167 ASN X 169 1 O LEU X 168 N MSE X 144 SHEET 1 B 3 MSE X 193 LEU X 200 0 SHEET 2 B 3 PHE X 203 ASP X 211 -1 O PHE X 203 N LEU X 200 SHEET 3 B 3 LEU X 261 PRO X 262 -1 O LEU X 261 N TRP X 206 SHEET 1 C 3 GLU X 337 GLU X 344 0 SHEET 2 C 3 MSE X 357 GLY X 365 -1 O VAL X 358 N VAL X 343 SHEET 3 C 3 GLY X 368 PRO X 371 -1 O GLU X 370 N ILE X 363 CISPEP 1 LYS X 3 LYS X 4 0 18.85 CISPEP 2 ASN X 149 PRO X 150 0 -2.91 CISPEP 3 GLN X 443 SER X 444 0 0.43 CRYST1 82.604 102.017 144.748 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006909 0.00000