HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-JAN-03 1NRK TITLE YGFZ PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: YGFZ PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPOT PR51; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YGFZ OR B2898; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS YGFZ, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, STRUCTURE 2 FUNCTION KEYWDS 2 PROJECT, S2F EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,G.L.GILLILAND,STRUCTURE 2 FUNCTION PROJECT AUTHOR 2 (S2F) REVDAT 5 21-DEC-22 1NRK 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 1NRK 1 VERSN REVDAT 3 05-DEC-06 1NRK 1 KEYWDS REVDAT 2 22-FEB-05 1NRK 1 JRNL REVDAT 1 09-MAR-04 1NRK 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,E.SARIKAYA,S.PULLALAREVU,W.KRAJEWSKI, JRNL AUTH 2 A.GALKIN,A.J.HOWARD,O.HERZBERG,G.L.GILLILAND JRNL TITL CRYSTAL STRUCTURE OF THE YGFZ PROTEIN FROM ESCHERICHIA COLI JRNL TITL 2 SUGGESTS A FOLATE-DEPENDENT REGULATORY ROLE IN ONE-CARBON JRNL TITL 3 METABOLISM. JRNL REF J.BACTERIOL. V. 186 7134 2004 JRNL REFN ISSN 0021-9193 JRNL PMID 15489424 JRNL DOI 10.1128/JB.186.21.7134-7140.2004 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1106 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3980 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.4600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2594 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3516 ; 1.644 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 7.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1972 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1341 ; 0.317 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.229 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.324 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1619 ; 4.571 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2590 ; 7.674 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 975 ; 8.741 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 926 ;10.384 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21998 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA ACETATE, 30% AMMONIUM SULFATE, REMARK 280 PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.33333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.33333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 86 NE2 GLN A 94 1.94 REMARK 500 O GLU A 301 N ASP A 303 2.02 REMARK 500 O LYS A 268 ND2 ASN A 272 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 112 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 113 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 166 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP A 175 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU A 248 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 -166.16 -106.90 REMARK 500 LEU A 24 56.73 -99.00 REMARK 500 ASP A 26 3.40 -69.40 REMARK 500 LEU A 59 75.82 -104.53 REMARK 500 SER A 71 158.74 168.12 REMARK 500 SER A 89 0.03 -62.63 REMARK 500 VAL A 90 -15.41 -140.94 REMARK 500 PHE A 123 -79.84 -40.10 REMARK 500 GLN A 124 56.10 -116.47 REMARK 500 ALA A 158 -8.02 -161.16 REMARK 500 GLU A 159 111.09 112.48 REMARK 500 ASN A 185 -160.81 -119.23 REMARK 500 THR A 214 -2.02 -145.55 REMARK 500 ASN A 215 12.29 81.02 REMARK 500 CYS A 228 132.35 171.66 REMARK 500 ALA A 243 106.61 -55.29 REMARK 500 LYS A 245 -94.27 -30.14 REMARK 500 ARG A 246 -153.37 -134.17 REMARK 500 ALA A 255 148.99 -172.61 REMARK 500 MSE A 269 35.02 -64.74 REMARK 500 GLU A 271 16.65 -150.19 REMARK 500 TRP A 273 -157.63 -52.97 REMARK 500 ARG A 274 -96.15 -127.89 REMARK 500 THR A 276 -86.42 -104.76 REMARK 500 GLU A 286 -70.23 -56.93 REMARK 500 ASP A 287 -60.05 -12.72 REMARK 500 MSE A 300 149.60 -179.69 REMARK 500 PRO A 302 39.59 -49.17 REMARK 500 ASP A 303 -45.28 -131.48 REMARK 500 ARG A 307 127.23 -173.87 REMARK 500 VAL A 308 138.85 -34.23 REMARK 500 ALA A 312 66.84 -154.49 REMARK 500 THR A 314 89.17 -59.09 REMARK 500 HIS A 316 -157.92 -115.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YGFZ RELATED DB: TARGETDB DBREF 1NRK A 1 325 UNP P39179 UP14_ECOLI 1 325 SEQADV 1NRK GLY A -2 UNP P39179 EXPRESSION TAG SEQADV 1NRK SER A -1 UNP P39179 EXPRESSION TAG SEQADV 1NRK HIS A 0 UNP P39179 EXPRESSION TAG SEQADV 1NRK MSE A 1 UNP P39179 MET 1 MODIFIED RESIDUE SEQADV 1NRK MSE A 22 UNP P39179 MET 22 MODIFIED RESIDUE SEQADV 1NRK MSE A 41 UNP P39179 MET 41 MODIFIED RESIDUE SEQADV 1NRK MSE A 52 UNP P39179 MET 52 MODIFIED RESIDUE SEQADV 1NRK MSE A 69 UNP P39179 MET 69 MODIFIED RESIDUE SEQADV 1NRK MSE A 172 UNP P39179 MET 172 MODIFIED RESIDUE SEQADV 1NRK MSE A 234 UNP P39179 MET 234 MODIFIED RESIDUE SEQADV 1NRK MSE A 269 UNP P39179 MET 269 MODIFIED RESIDUE SEQADV 1NRK MSE A 296 UNP P39179 MET 296 MODIFIED RESIDUE SEQADV 1NRK MSE A 300 UNP P39179 MET 300 MODIFIED RESIDUE SEQRES 1 A 328 GLY SER HIS MSE ALA PHE THR PRO PHE PRO PRO ARG GLN SEQRES 2 A 328 PRO THR ALA SER ALA ARG LEU PRO LEU THR LEU MSE THR SEQRES 3 A 328 LEU ASP ASP TRP ALA LEU ALA THR ILE THR GLY ALA ASP SEQRES 4 A 328 SER GLU LYS TYR MSE GLN GLY GLN VAL THR ALA ASP VAL SEQRES 5 A 328 SER GLN MSE ALA GLU ASP GLN HIS LEU LEU ALA ALA HIS SEQRES 6 A 328 CYS ASP ALA LYS GLY LYS MSE TRP SER ASN LEU ARG LEU SEQRES 7 A 328 PHE ARG ASP GLY ASP GLY PHE ALA TRP ILE GLU ARG ARG SEQRES 8 A 328 SER VAL ARG GLU PRO GLN LEU THR GLU LEU LYS LYS TYR SEQRES 9 A 328 ALA VAL PHE SER LYS VAL THR ILE ALA PRO ASP ASP GLU SEQRES 10 A 328 ARG VAL LEU LEU GLY VAL ALA GLY PHE GLN ALA ARG ALA SEQRES 11 A 328 ALA LEU ALA ASN LEU PHE SER GLU LEU PRO SER LYS GLU SEQRES 12 A 328 LYS GLN VAL VAL LYS GLU GLY ALA THR THR LEU LEU TRP SEQRES 13 A 328 PHE GLU HIS PRO ALA GLU ARG PHE LEU ILE VAL THR ASP SEQRES 14 A 328 GLU ALA THR ALA ASN MSE LEU THR ASP LYS LEU ARG GLY SEQRES 15 A 328 GLU ALA GLU LEU ASN ASN SER GLN GLN TRP LEU ALA LEU SEQRES 16 A 328 ASN ILE GLU ALA GLY PHE PRO VAL ILE ASP ALA ALA ASN SEQRES 17 A 328 SER GLY GLN PHE ILE PRO GLN ALA THR ASN LEU GLN ALA SEQRES 18 A 328 LEU GLY GLY ILE SER PHE LYS LYS GLY CYS TYR THR GLY SEQRES 19 A 328 GLN GLU MSE VAL ALA ARG ALA LYS PHE ARG GLY ALA ASN SEQRES 20 A 328 LYS ARG ALA LEU TRP LEU LEU ALA GLY SER ALA SER ARG SEQRES 21 A 328 LEU PRO GLU ALA GLY GLU ASP LEU GLU LEU LYS MSE GLY SEQRES 22 A 328 GLU ASN TRP ARG ARG THR GLY THR VAL LEU ALA ALA VAL SEQRES 23 A 328 LYS LEU GLU ASP GLY GLN VAL VAL VAL GLN VAL VAL MSE SEQRES 24 A 328 ASN ASN ASP MSE GLU PRO ASP SER ILE PHE ARG VAL ARG SEQRES 25 A 328 ASP ASP ALA ASN THR LEU HIS ILE GLU PRO LEU PRO TYR SEQRES 26 A 328 SER LEU GLU MODRES 1NRK MSE A 1 MET SELENOMETHIONINE MODRES 1NRK MSE A 22 MET SELENOMETHIONINE MODRES 1NRK MSE A 41 MET SELENOMETHIONINE MODRES 1NRK MSE A 52 MET SELENOMETHIONINE MODRES 1NRK MSE A 69 MET SELENOMETHIONINE MODRES 1NRK MSE A 172 MET SELENOMETHIONINE MODRES 1NRK MSE A 234 MET SELENOMETHIONINE MODRES 1NRK MSE A 269 MET SELENOMETHIONINE MODRES 1NRK MSE A 296 MET SELENOMETHIONINE MODRES 1NRK MSE A 300 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 22 8 HET MSE A 41 8 HET MSE A 52 8 HET MSE A 69 8 HET MSE A 172 8 HET MSE A 234 8 HET MSE A 269 8 HET MSE A 296 8 HET MSE A 300 8 HET SO4 A 400 5 HET SO4 A 401 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *215(H2 O) HELIX 1 1 ALA A 13 LEU A 17 5 5 HELIX 2 2 ASP A 36 GLY A 43 1 8 HELIX 3 3 VAL A 90 TYR A 101 1 12 HELIX 4 4 ALA A 102 SER A 105 5 4 HELIX 5 5 GLN A 124 ASN A 131 1 8 HELIX 6 6 ASP A 166 ARG A 178 1 13 HELIX 7 7 SER A 186 ALA A 196 1 11 HELIX 8 8 ASP A 202 SER A 206 5 5 HELIX 9 9 ILE A 210 GLY A 220 5 11 HELIX 10 10 GLY A 231 ARG A 241 1 11 SHEET 1 A 6 VAL A 143 GLU A 146 0 SHEET 2 A 6 THR A 149 PHE A 154 -1 O LEU A 151 N VAL A 144 SHEET 3 A 6 ARG A 160 THR A 165 -1 O VAL A 164 N THR A 150 SHEET 4 A 6 VAL A 116 ALA A 121 -1 N VAL A 116 O THR A 165 SHEET 5 A 6 THR A 20 THR A 23 -1 N MSE A 22 O GLY A 119 SHEET 6 A 6 GLU A 182 ASN A 185 1 O GLU A 182 N LEU A 21 SHEET 1 B 5 LEU A 58 CYS A 63 0 SHEET 2 B 5 MSE A 69 ASP A 78 -1 O TRP A 70 N HIS A 62 SHEET 3 B 5 GLY A 81 ARG A 87 -1 O ALA A 83 N PHE A 76 SHEET 4 B 5 TRP A 27 THR A 33 -1 N ALA A 28 O GLU A 86 SHEET 5 B 5 THR A 108 ASP A 112 -1 O THR A 108 N THR A 33 SHEET 1 C 4 THR A 278 LYS A 284 0 SHEET 2 C 4 GLN A 289 ASN A 297 -1 O GLN A 293 N ALA A 281 SHEET 3 C 4 ARG A 246 SER A 254 -1 N TRP A 249 O VAL A 294 SHEET 4 C 4 HIS A 316 GLU A 318 -1 O GLU A 318 N LEU A 250 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C LEU A 21 N MSE A 22 1555 1555 1.32 LINK C MSE A 22 N THR A 23 1555 1555 1.31 LINK C TYR A 40 N MSE A 41 1555 1555 1.34 LINK C MSE A 41 N GLN A 42 1555 1555 1.33 LINK C GLN A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N ALA A 53 1555 1555 1.33 LINK C LYS A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N TRP A 70 1555 1555 1.33 LINK C ASN A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N LEU A 173 1555 1555 1.34 LINK C GLU A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N VAL A 235 1555 1555 1.33 LINK C LYS A 268 N MSE A 269 1555 1555 1.33 LINK C MSE A 269 N GLY A 270 1555 1555 1.34 LINK C VAL A 295 N MSE A 296 1555 1555 1.33 LINK C MSE A 296 N ASN A 297 1555 1555 1.33 LINK C ASP A 299 N MSE A 300 1555 1555 1.33 LINK C MSE A 300 N GLU A 301 1555 1555 1.33 CISPEP 1 HIS A 156 PRO A 157 0 -11.76 SITE 1 AC1 7 TRP A 27 ARG A 74 PHE A 154 LEU A 162 SITE 2 AC1 7 TRP A 189 ASN A 193 HOH A 416 SITE 1 AC2 3 GLY A 79 LYS A 145 HOH A 497 CRYST1 151.000 151.000 68.000 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006623 0.003824 0.000000 0.00000 SCALE2 0.000000 0.007647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014706 0.00000 HETATM 1 N MSE A 1 87.958 36.434 20.463 1.00118.42 N HETATM 2 CA MSE A 1 87.083 35.757 19.456 1.00119.99 C HETATM 3 C MSE A 1 85.881 36.634 19.127 1.00115.58 C HETATM 4 O MSE A 1 85.977 37.872 19.148 1.00110.09 O HETATM 5 CB MSE A 1 86.620 34.383 19.961 1.00126.96 C HETATM 6 CG MSE A 1 87.707 33.295 19.914 1.00137.44 C HETATM 7 SE MSE A 1 88.605 32.894 21.655 1.00167.38 SE HETATM 8 CE MSE A 1 88.644 34.744 22.506 1.00137.21 C