HEADER HYDROLASE 28-JAN-03 1NSO TITLE FOLDED MONOMER OF PROTEASE FROM MASON-PFIZER MONKEY VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE 13 KDA; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.23.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN RETROVIRUS SRV-1; SOURCE 3 ORGANISM_TAXID: 11942; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS M-PMV, PROTEASE, VIRUS MATURATION, FOLDED MONOMER, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR V.VEVERKA,H.BAUEROVA,A.ZABRANSKY,J.LANG,T.RUML,I.PICHOVA,R.HRABAL REVDAT 5 10-NOV-21 1NSO 1 COMPND SOURCE DBREF SEQADV REVDAT 4 27-OCT-21 1NSO 1 REMARK SEQADV REVDAT 3 24-FEB-09 1NSO 1 VERSN REVDAT 2 18-NOV-03 1NSO 1 JRNL REVDAT 1 18-FEB-03 1NSO 0 JRNL AUTH V.VEVERKA,H.BAUEROVA,A.ZABRANSKY,J.LANG,T.RUML,I.PICHOVA, JRNL AUTH 2 R.HRABAL JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A MONOMERIC FORM OF A JRNL TITL 2 RETROVIRAL PROTEASE JRNL REF J.MOL.BIOL. V. 333 771 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 14568536 JRNL DOI 10.1016/J.JMB.2003.08.049 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, ARIA 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), LINGE, J., O'DONOGHUE, S., REMARK 3 NILGES, M. (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NSO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000018165. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.2 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEASE U-15N,13C; 50MM REMARK 210 ACETATE BUFFER NA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 4D_13C/15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, SPARKY 3.106, ARIA REMARK 210 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 47 HA LYS A 62 1.37 REMARK 500 O ASP A 47 CA LYS A 62 2.02 REMARK 500 O ASP A 47 CB LYS A 62 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 7 153.76 61.38 REMARK 500 1 GLN A 8 90.31 -66.90 REMARK 500 1 ASP A 17 -66.78 67.06 REMARK 500 1 ASP A 18 34.96 -173.52 REMARK 500 1 GLN A 57 93.12 -43.32 REMARK 500 1 SER A 64 163.23 -34.50 REMARK 500 1 LYS A 66 111.77 -33.97 REMARK 500 1 LYS A 73 -27.30 -39.78 REMARK 500 1 ASN A 75 45.04 75.39 REMARK 500 1 ASN A 76 140.68 174.64 REMARK 500 1 SER A 77 -47.11 -168.73 REMARK 500 1 LEU A 88 84.61 68.36 REMARK 500 1 PRO A 89 29.61 -77.25 REMARK 500 1 ASN A 91 90.33 40.61 REMARK 500 1 LYS A 102 49.75 179.04 REMARK 500 1 MET A 105 72.97 -65.40 REMARK 500 2 ALA A 7 -171.19 60.68 REMARK 500 2 ASP A 17 34.30 24.07 REMARK 500 2 ASP A 18 -47.80 167.97 REMARK 500 2 ASP A 30 -36.70 -147.45 REMARK 500 2 LYS A 35 162.94 -46.61 REMARK 500 2 PRO A 40 107.85 -53.50 REMARK 500 2 THR A 46 -179.78 -65.99 REMARK 500 2 ASP A 47 -58.73 148.56 REMARK 500 2 GLN A 57 93.44 -42.81 REMARK 500 2 LYS A 66 119.77 -18.79 REMARK 500 2 LYS A 73 -30.20 -36.69 REMARK 500 2 ASN A 76 144.32 177.88 REMARK 500 2 SER A 77 -45.64 177.53 REMARK 500 2 PRO A 86 48.29 -86.09 REMARK 500 2 ASN A 87 13.67 -144.99 REMARK 500 2 LEU A 88 78.53 66.17 REMARK 500 2 PRO A 89 9.18 -69.20 REMARK 500 2 VAL A 90 -8.01 95.09 REMARK 500 2 ASN A 91 86.53 54.71 REMARK 500 2 LYS A 102 -29.79 -147.10 REMARK 500 2 ILE A 103 -87.41 -76.36 REMARK 500 2 MET A 105 81.61 -62.29 REMARK 500 3 ALA A 7 -178.53 61.74 REMARK 500 3 GLN A 57 94.20 -41.41 REMARK 500 3 SER A 64 154.77 -27.67 REMARK 500 3 LYS A 66 146.22 -31.59 REMARK 500 3 LYS A 73 -33.31 -35.50 REMARK 500 3 SER A 77 -68.06 -174.21 REMARK 500 3 PRO A 86 43.41 -83.75 REMARK 500 3 LEU A 88 86.03 65.69 REMARK 500 3 PRO A 89 27.13 -77.87 REMARK 500 3 MET A 104 -174.82 -63.81 REMARK 500 3 MET A 105 72.73 -67.80 REMARK 500 4 ALA A 7 -162.08 60.51 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1NSO A 1 107 UNP P04025 POL_SRV1 761 867 SEQADV 1NSO ALA A 7 UNP P04025 CYS 767 ENGINEERED MUTATION SEQADV 1NSO ASN A 26 UNP P04025 ASP 786 ENGINEERED MUTATION SEQADV 1NSO ALA A 106 UNP P04025 CYS 866 ENGINEERED MUTATION SEQRES 1 A 107 TRP VAL GLN PRO ILE THR ALA GLN LYS PRO SER LEU THR SEQRES 2 A 107 LEU TRP LEU ASP ASP LYS MET PHE THR GLY LEU ILE ASN SEQRES 3 A 107 THR GLY ALA ASP VAL THR ILE ILE LYS LEU GLU ASP TRP SEQRES 4 A 107 PRO PRO ASN TRP PRO ILE THR ASP THR LEU THR ASN LEU SEQRES 5 A 107 ARG GLY ILE GLY GLN SER ASN ASN PRO LYS GLN SER SER SEQRES 6 A 107 LYS TYR LEU THR TRP ARG ASP LYS GLU ASN ASN SER GLY SEQRES 7 A 107 LEU ILE LYS PRO PHE VAL ILE PRO ASN LEU PRO VAL ASN SEQRES 8 A 107 LEU TRP GLY ARG ASP LEU LEU SER GLN MET LYS ILE MET SEQRES 9 A 107 MET ALA SER HELIX 1 1 LYS A 35 TRP A 39 5 5 HELIX 2 2 GLY A 94 ILE A 103 1 10 SHEET 1 A 4 LYS A 19 GLY A 23 0 SHEET 2 A 4 LEU A 12 LEU A 16 -1 N LEU A 16 O LYS A 19 SHEET 3 A 4 LEU A 68 ASP A 72 -1 O ARG A 71 N TRP A 15 SHEET 4 A 4 ASN A 76 ILE A 80 -1 O GLY A 78 N TRP A 70 SHEET 1 B 2 LEU A 49 LEU A 52 0 SHEET 2 B 2 GLN A 57 ASN A 60 -1 O ASN A 60 N LEU A 49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1