HEADER REPLICATION 31-JAN-03 1NUI TITLE CRYSTAL STRUCTURE OF THE PRIMASE FRAGMENT OF BACTERIOPHAGE T7 PRIMASE- TITLE 2 HELICASE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE/HELICASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-255; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 3 ORGANISM_TAXID: 10760; SOURCE 4 GENE: 4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS ZINC-BIDING DOMAIN, TOPRIM FOLD, DNA REPLICATION, DNA-DIRECTED RNA KEYWDS 2 POLYMERASE, PRIMOSOME, LATE PROTEIN, ATP-BINDING, TRANSFERASE, KEYWDS 3 REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR M.KATO,T.ITO,G.WAGNER,C.C.RICHARDSON,T.ELLENBERGER REVDAT 5 14-FEB-24 1NUI 1 REMARK REVDAT 4 27-OCT-21 1NUI 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1NUI 1 VERSN REVDAT 2 24-FEB-09 1NUI 1 VERSN REVDAT 1 27-MAY-03 1NUI 0 JRNL AUTH M.KATO,T.ITO,G.WAGNER,C.C.RICHARDSON,T.ELLENBERGER JRNL TITL MODULAR ARCHITECTURE OF THE BACTERIOPHAGE T7 PRIMASE COUPLES JRNL TITL 2 RNA PRIMER SYNTHESIS TO DNA SYNTHESIS JRNL REF MOL.CELL V. 11 1349 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 12769857 JRNL DOI 10.1016/S1097-2765(03)00195-3 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1303 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.10000 REMARK 3 B22 (A**2) : 2.10000 REMARK 3 B33 (A**2) : -3.14000 REMARK 3 B12 (A**2) : 1.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.680 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.364 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.284 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.135 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3843 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5173 ; 1.464 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 1.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2940 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2014 ; 0.293 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.368 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.090 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2371 ; 1.037 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3779 ; 2.025 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1472 ; 3.191 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1394 ; 5.324 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 40 6 REMARK 3 1 B 10 B 40 6 REMARK 3 2 A 57 A 255 5 REMARK 3 2 B 57 B 255 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1551 ; 0.44 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 238 ; 5.37 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1551 ; 1.57 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 238 ; 3.00 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 90.1725 49.0973 21.9643 REMARK 3 T TENSOR REMARK 3 T11: 0.5033 T22: 0.5322 REMARK 3 T33: 0.4874 T12: -0.1964 REMARK 3 T13: -0.0843 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: 14.9892 L22: 11.7408 REMARK 3 L33: 19.8698 L12: -12.0978 REMARK 3 L13: -8.2518 L23: 10.1938 REMARK 3 S TENSOR REMARK 3 S11: -0.8520 S12: 0.0913 S13: -0.8933 REMARK 3 S21: 1.2635 S22: -0.2976 S23: 0.2412 REMARK 3 S31: 1.0375 S32: 0.9240 S33: 1.1496 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7047 69.8542 19.5145 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.5387 REMARK 3 T33: 0.3389 T12: -0.0390 REMARK 3 T13: -0.0857 T23: 0.1444 REMARK 3 L TENSOR REMARK 3 L11: 9.6441 L22: 1.9050 REMARK 3 L33: 4.3323 L12: 0.6644 REMARK 3 L13: 3.4306 L23: -0.3648 REMARK 3 S TENSOR REMARK 3 S11: -0.3447 S12: 0.7708 S13: 0.9336 REMARK 3 S21: -0.1935 S22: 0.1510 S23: 0.1340 REMARK 3 S31: -0.3736 S32: 0.2607 S33: 0.1937 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 42 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3843 53.7531 39.8301 REMARK 3 T TENSOR REMARK 3 T11: 0.5678 T22: 0.6547 REMARK 3 T33: 0.4406 T12: 0.0876 REMARK 3 T13: -0.0657 T23: -0.1457 REMARK 3 L TENSOR REMARK 3 L11: 26.4016 L22: 11.5727 REMARK 3 L33: 11.8456 L12: 14.9794 REMARK 3 L13: -11.5948 L23: -15.3116 REMARK 3 S TENSOR REMARK 3 S11: -1.1775 S12: 0.3064 S13: -0.4971 REMARK 3 S21: -0.2842 S22: 0.4254 S23: 0.2149 REMARK 3 S31: -0.4126 S32: -0.2590 S33: 0.7521 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): 82.5700 64.7157 41.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: 0.2587 REMARK 3 T33: 0.1651 T12: -0.0778 REMARK 3 T13: -0.0269 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 4.5707 L22: 1.4009 REMARK 3 L33: 4.1364 L12: 0.1449 REMARK 3 L13: 1.3257 L23: -0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.0712 S12: 0.1234 S13: -0.0803 REMARK 3 S21: -0.1411 S22: 0.0668 S23: 0.1447 REMARK 3 S31: -0.0217 S32: -0.2824 S33: 0.0044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9474, 0.9797, 0.9795, 0.9300, REMARK 200 1.5418 REMARK 200 MONOCHROMATOR : HORIZONTAL FOCUSSING 5.05 DEGREE REMARK 200 ASYMMETRIC CUT SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28599 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, MES, DTT, ATP, PH 6.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500004 -0.866019 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866032 -0.499996 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.48167 REMARK 290 SMTRY1 3 -0.499996 0.866019 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866032 -0.500004 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.96333 REMARK 290 SMTRY1 4 -0.500004 0.866015 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866032 0.500004 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.96333 REMARK 290 SMTRY1 6 -0.499996 -0.866023 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866032 0.499996 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.48167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMELECULE:1, 2 REMARK 300 THE AUTHOR INDICATES THAT THE PROTEIN CAN REMARK 300 FUNCTION AS A MONOMER BUT APPEARS TO FORM A REMARK 300 DIMER IN THE CRYSTAL POSSIBLY DUE TO CRYSTAL REMARK 300 PACKING FORCES. SEE REMARK 350 FOR INFORMATION REMARK 300 ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 GLY A 45 REMARK 465 ASN A 46 REMARK 465 GLU A 47 REMARK 465 ASP A 48 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 ASP B 8 REMARK 465 SER B 9 REMARK 465 THR B 43 REMARK 465 ALA B 44 REMARK 465 GLY B 45 REMARK 465 ASN B 46 REMARK 465 GLU B 47 REMARK 465 ASP B 48 REMARK 465 THR B 49 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB SER B 22 CB SER B 22 4556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 13 161.59 174.89 REMARK 500 ASN A 19 -84.53 -108.23 REMARK 500 SER A 22 -158.41 -77.58 REMARK 500 ASP A 31 -46.87 -23.90 REMARK 500 VAL A 38 -77.56 -52.72 REMARK 500 GLU A 40 35.91 74.81 REMARK 500 LYS A 55 10.87 -50.98 REMARK 500 SER A 59 -152.25 -160.31 REMARK 500 ASP A 125 -169.10 -120.14 REMARK 500 LYS A 128 65.01 70.61 REMARK 500 ASN A 148 44.54 -92.97 REMARK 500 CYS A 171 28.90 43.81 REMARK 500 HIS A 180 47.39 -107.69 REMARK 500 ALA A 185 -51.57 -28.11 REMARK 500 PHE A 196 -12.71 -43.20 REMARK 500 LEU A 204 94.29 -56.30 REMARK 500 MET A 205 67.48 -101.34 REMARK 500 ASP A 207 154.28 -43.74 REMARK 500 MET A 208 62.38 -101.09 REMARK 500 VAL A 228 173.16 -57.14 REMARK 500 ARG A 229 137.73 -176.79 REMARK 500 ASN A 244 38.67 -140.86 REMARK 500 SER B 22 103.49 163.39 REMARK 500 ASP B 24 72.33 -110.43 REMARK 500 PHE B 35 124.96 179.91 REMARK 500 VAL B 38 -70.72 -42.76 REMARK 500 GLU B 40 45.64 38.18 REMARK 500 LYS B 55 25.54 -76.98 REMARK 500 SER B 59 -168.77 -174.37 REMARK 500 GLU B 73 0.30 -67.78 REMARK 500 LEU B 81 78.09 -104.41 REMARK 500 ARG B 84 -10.29 -142.28 REMARK 500 VAL B 104 145.10 -33.39 REMARK 500 ASP B 125 -167.93 -111.56 REMARK 500 ASP B 127 25.69 -69.88 REMARK 500 LYS B 128 71.45 40.00 REMARK 500 CYS B 171 13.26 54.47 REMARK 500 TYR B 193 -71.06 -43.88 REMARK 500 MET B 208 54.77 -91.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 66 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 17 SG REMARK 620 2 CYS A 20 SG 118.0 REMARK 620 3 CYS A 36 SG 104.1 94.7 REMARK 620 4 CYS A 39 SG 113.0 126.9 86.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 157 OE2 REMARK 620 2 ASP A 207 OD1 74.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 237 OD2 REMARK 620 2 HOH A 807 O 162.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 17 SG REMARK 620 2 CYS B 20 SG 80.5 REMARK 620 3 CYS B 36 SG 85.8 137.9 REMARK 620 4 CYS B 39 SG 95.8 117.0 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 157 OE2 REMARK 620 2 ASP B 207 OD1 73.7 REMARK 620 3 HOH B 805 O 74.4 68.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 237 OD2 REMARK 620 2 HOH B 804 O 168.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 604 DBREF 1NUI A 1 255 UNP P03692 PRIM_BPT7 1 255 DBREF 1NUI B 1 255 UNP P03692 PRIM_BPT7 1 255 SEQADV 1NUI GLY A 64 UNP P03692 MET 64 ENGINEERED MUTATION SEQADV 1NUI GLY B 64 UNP P03692 MET 64 ENGINEERED MUTATION SEQRES 1 A 255 MET ASP ASN SER HIS ASP SER ASP SER VAL PHE LEU TYR SEQRES 2 A 255 HIS ILE PRO CYS ASP ASN CYS GLY SER SER ASP GLY ASN SEQRES 3 A 255 SER LEU PHE SER ASP GLY HIS THR PHE CYS TYR VAL CYS SEQRES 4 A 255 GLU LYS TRP THR ALA GLY ASN GLU ASP THR LYS GLU ARG SEQRES 5 A 255 ALA SER LYS ARG LYS PRO SER GLY GLY LYS PRO GLY THR SEQRES 6 A 255 TYR ASN VAL TRP ASN PHE GLY GLU SER ASN GLY ARG TYR SEQRES 7 A 255 SER ALA LEU THR ALA ARG GLY ILE SER LYS GLU THR CYS SEQRES 8 A 255 GLN LYS ALA GLY TYR TRP ILE ALA LYS VAL ASP GLY VAL SEQRES 9 A 255 MET TYR GLN VAL ALA ASP TYR ARG ASP GLN ASN GLY ASN SEQRES 10 A 255 ILE VAL SER GLN LYS VAL ARG ASP LYS ASP LYS ASN PHE SEQRES 11 A 255 LYS THR THR GLY SER HIS LYS SER ASP ALA LEU PHE GLY SEQRES 12 A 255 LYS HIS LEU TRP ASN GLY GLY LYS LYS ILE VAL VAL THR SEQRES 13 A 255 GLU GLY GLU ILE ASP MET LEU THR VAL MET GLU LEU GLN SEQRES 14 A 255 ASP CYS LYS TYR PRO VAL VAL SER LEU GLY HIS GLY ALA SEQRES 15 A 255 SER ALA ALA LYS LYS THR CYS ALA ALA ASN TYR GLU TYR SEQRES 16 A 255 PHE ASP GLN PHE GLU GLN ILE ILE LEU MET PHE ASP MET SEQRES 17 A 255 ASP GLU ALA GLY ARG LYS ALA VAL GLU GLU ALA ALA GLN SEQRES 18 A 255 VAL LEU PRO ALA GLY LYS VAL ARG VAL ALA VAL LEU PRO SEQRES 19 A 255 CYS LYS ASP ALA ASN GLU CYS HIS LEU ASN GLY HIS ASP SEQRES 20 A 255 ARG GLU ILE MET GLU GLN VAL TRP SEQRES 1 B 255 MET ASP ASN SER HIS ASP SER ASP SER VAL PHE LEU TYR SEQRES 2 B 255 HIS ILE PRO CYS ASP ASN CYS GLY SER SER ASP GLY ASN SEQRES 3 B 255 SER LEU PHE SER ASP GLY HIS THR PHE CYS TYR VAL CYS SEQRES 4 B 255 GLU LYS TRP THR ALA GLY ASN GLU ASP THR LYS GLU ARG SEQRES 5 B 255 ALA SER LYS ARG LYS PRO SER GLY GLY LYS PRO GLY THR SEQRES 6 B 255 TYR ASN VAL TRP ASN PHE GLY GLU SER ASN GLY ARG TYR SEQRES 7 B 255 SER ALA LEU THR ALA ARG GLY ILE SER LYS GLU THR CYS SEQRES 8 B 255 GLN LYS ALA GLY TYR TRP ILE ALA LYS VAL ASP GLY VAL SEQRES 9 B 255 MET TYR GLN VAL ALA ASP TYR ARG ASP GLN ASN GLY ASN SEQRES 10 B 255 ILE VAL SER GLN LYS VAL ARG ASP LYS ASP LYS ASN PHE SEQRES 11 B 255 LYS THR THR GLY SER HIS LYS SER ASP ALA LEU PHE GLY SEQRES 12 B 255 LYS HIS LEU TRP ASN GLY GLY LYS LYS ILE VAL VAL THR SEQRES 13 B 255 GLU GLY GLU ILE ASP MET LEU THR VAL MET GLU LEU GLN SEQRES 14 B 255 ASP CYS LYS TYR PRO VAL VAL SER LEU GLY HIS GLY ALA SEQRES 15 B 255 SER ALA ALA LYS LYS THR CYS ALA ALA ASN TYR GLU TYR SEQRES 16 B 255 PHE ASP GLN PHE GLU GLN ILE ILE LEU MET PHE ASP MET SEQRES 17 B 255 ASP GLU ALA GLY ARG LYS ALA VAL GLU GLU ALA ALA GLN SEQRES 18 B 255 VAL LEU PRO ALA GLY LYS VAL ARG VAL ALA VAL LEU PRO SEQRES 19 B 255 CYS LYS ASP ALA ASN GLU CYS HIS LEU ASN GLY HIS ASP SEQRES 20 B 255 ARG GLU ILE MET GLU GLN VAL TRP HET ZN A 501 1 HET MG A 601 1 HET MG A 602 1 HET ZN B 502 1 HET MG B 603 1 HET MG B 604 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 4(MG 2+) FORMUL 9 HOH *14(H2 O) HELIX 1 1 THR A 49 LYS A 55 1 7 HELIX 2 2 ASN A 70 SER A 74 5 5 HELIX 3 3 LEU A 81 GLY A 85 5 5 HELIX 4 4 SER A 87 GLY A 95 1 9 HELIX 5 5 GLY A 143 TRP A 147 5 5 HELIX 6 6 GLY A 158 ASP A 170 1 13 HELIX 7 7 ALA A 184 ASN A 192 1 9 HELIX 8 8 ASN A 192 ASP A 197 1 6 HELIX 9 9 ASP A 209 LEU A 223 1 15 HELIX 10 10 ASP A 237 LEU A 243 1 7 HELIX 11 11 HIS A 246 TRP A 255 1 10 HELIX 12 12 LYS B 50 LYS B 55 1 6 HELIX 13 13 PHE B 71 ASN B 75 5 5 HELIX 14 14 LEU B 81 GLY B 85 5 5 HELIX 15 15 SER B 87 GLY B 95 1 9 HELIX 16 16 GLY B 143 TRP B 147 5 5 HELIX 17 17 GLY B 158 GLN B 169 1 12 HELIX 18 18 GLY B 181 SER B 183 5 3 HELIX 19 19 ALA B 184 ASN B 192 1 9 HELIX 20 20 ASN B 192 ASP B 197 1 6 HELIX 21 21 ASP B 209 LEU B 223 1 15 HELIX 22 22 ASP B 237 ASN B 244 1 8 HELIX 23 23 HIS B 246 TRP B 255 1 10 SHEET 1 A 4 PHE A 11 ILE A 15 0 SHEET 2 A 4 ASN A 26 PHE A 29 -1 O ASN A 26 N ILE A 15 SHEET 3 A 4 THR A 34 CYS A 36 -1 O PHE A 35 N SER A 27 SHEET 4 A 4 TRP A 42 THR A 43 -1 O THR A 43 N THR A 34 SHEET 1 B 4 TYR A 96 VAL A 101 0 SHEET 2 B 4 VAL A 104 ARG A 112 -1 O VAL A 108 N TRP A 97 SHEET 3 B 4 ILE A 118 ARG A 124 -1 O SER A 120 N TYR A 111 SHEET 4 B 4 LYS A 131 GLY A 134 -1 O LYS A 131 N VAL A 123 SHEET 1 C 4 VAL A 175 VAL A 176 0 SHEET 2 C 4 VAL A 154 THR A 156 1 N VAL A 154 O VAL A 176 SHEET 3 C 4 ILE A 202 MET A 205 1 O MET A 205 N VAL A 155 SHEET 4 C 4 VAL A 228 VAL A 230 1 N ARG A 229 O LEU A 204 SHEET 1 D 3 PHE B 11 TYR B 13 0 SHEET 2 D 3 ASN B 26 PHE B 29 -1 O LEU B 28 N TYR B 13 SHEET 3 D 3 THR B 34 CYS B 36 -1 O PHE B 35 N SER B 27 SHEET 1 E 4 TYR B 96 LYS B 100 0 SHEET 2 E 4 MET B 105 ARG B 112 -1 O VAL B 108 N TRP B 97 SHEET 3 E 4 ILE B 118 ARG B 124 -1 O SER B 120 N TYR B 111 SHEET 4 E 4 THR B 132 GLY B 134 -1 O THR B 133 N GLN B 121 SHEET 1 F 5 LEU B 141 PHE B 142 0 SHEET 2 F 5 VAL B 175 LEU B 178 -1 O SER B 177 N PHE B 142 SHEET 3 F 5 GLY B 150 THR B 156 1 N THR B 156 O VAL B 176 SHEET 4 F 5 PHE B 199 MET B 205 1 O ILE B 203 N VAL B 155 SHEET 5 F 5 VAL B 228 VAL B 230 1 O ARG B 229 N LEU B 204 LINK SG CYS A 17 ZN ZN A 501 1555 1555 2.46 LINK SG CYS A 20 ZN ZN A 501 1555 1555 2.23 LINK SG CYS A 36 ZN ZN A 501 1555 1555 2.31 LINK SG CYS A 39 ZN ZN A 501 1555 1555 2.40 LINK OE2 GLU A 157 MG MG A 601 1555 1555 2.46 LINK OD1 ASP A 207 MG MG A 601 1555 1555 2.24 LINK OD2 ASP A 237 MG MG A 602 1555 1555 2.55 LINK MG MG A 602 O HOH A 807 1555 1555 2.77 LINK SG CYS B 17 ZN ZN B 502 1555 1555 2.59 LINK SG CYS B 20 ZN ZN B 502 1555 1555 2.39 LINK SG CYS B 36 ZN ZN B 502 1555 1555 2.25 LINK SG CYS B 39 ZN ZN B 502 1555 1555 2.55 LINK OE2 GLU B 157 MG MG B 603 1555 1555 2.14 LINK OD1 ASP B 207 MG MG B 603 1555 1555 2.04 LINK OD2 ASP B 237 MG MG B 604 1555 1555 2.32 LINK MG MG B 603 O HOH B 805 1555 1555 2.31 LINK MG MG B 604 O HOH B 804 1555 1555 3.13 SITE 1 AC1 4 CYS A 17 CYS A 20 CYS A 36 CYS A 39 SITE 1 AC2 4 CYS B 17 CYS B 20 CYS B 36 CYS B 39 SITE 1 AC3 2 GLU A 157 ASP A 207 SITE 1 AC4 3 ARG A 84 ASP A 237 HOH A 807 SITE 1 AC5 4 GLU B 157 ASP B 207 ASP B 209 HOH B 805 SITE 1 AC6 1 ASP B 237 CRYST1 136.459 136.460 85.445 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007328 0.004231 0.000000 0.00000 SCALE2 0.000000 0.008462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011703 0.00000