HEADER SIGNALING PROTEIN 04-FEB-03 1NVX TITLE STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OF THE RAS- TITLE 2 SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN P21/H-RAS-1; COMPND 3 CHAIN: Q, R; COMPND 4 FRAGMENT: RESIDUES 1-166; COMPND 5 SYNONYM: C-H-RAS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SON OF SEVENLESS PROTEIN HOMOLOG 1; COMPND 10 CHAIN: S; COMPND 11 FRAGMENT: RESIDUES 566-10466, INCLUDING THE RAS GUANINE NUCLEOTIDE COMPND 12 EXCHANGE FACTOR FRAGMENT; COMPND 13 SYNONYM: SOS-1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS OR HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P-PROEXHT; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: SOS1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: P-PROEXHT KEYWDS PROTO-ONCOGENE, GTP-BINDING, GUANINE-NUCLEOTIDE RELEASING FACTOR, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.MARGARIT,H.SONDERMANN,B.E.HALL,B.NAGAR,A.HOELZ,M.PIRRUCCELLO, AUTHOR 2 D.BAR-SAGI,J.KURIYAN REVDAT 4 16-AUG-23 1NVX 1 REMARK REVDAT 3 27-OCT-21 1NVX 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1NVX 1 VERSN REVDAT 1 01-APR-03 1NVX 0 JRNL AUTH S.M.MARGARIT,H.SONDERMANN,B.E.HALL,B.NAGAR,A.HOELZ, JRNL AUTH 2 M.PIRRUCCELLO,D.BAR-SAGI,J.KURIYAN JRNL TITL STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OF THE JRNL TITL 2 RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS JRNL REF CELL(CAMBRIDGE,MASS.) V. 112 685 2003 JRNL REFN ISSN 0092-8674 JRNL PMID 12628188 JRNL DOI 10.1016/S0092-8674(03)00149-1 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 28440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1959 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4319 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 304 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 103.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.01000 REMARK 3 B22 (A**2) : -15.01000 REMARK 3 B33 (A**2) : 30.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.270 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.950 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 32.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GTP.PAR REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : &_1_PARAMETER_INFILE_4 REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : GTP.TOP REMARK 3 TOPOLOGY FILE 3 : &_1_TOPOLOGY_INFILE_3 REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NVX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.948 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29067 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54200 REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NVU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-8% PEG 4000, 100 MM MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 87.60300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 87.60300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 117.06400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 87.60300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 87.60300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 117.06400 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 87.60300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 87.60300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 117.06400 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 87.60300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 87.60300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 117.06400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 87.60300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.60300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 117.06400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 87.60300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 87.60300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 117.06400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 87.60300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 87.60300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 117.06400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 87.60300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 87.60300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 117.06400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWO MOLECULES OF RAS BOUND TO ONE MOLECULE OF SOS, ONE AT REMARK 300 THE ACTIVE SITE (CHAINID, R) AND THE OTHER AT A DISTAL SITE REMARK 300 (CHAINID, Q). THE DISTAL RAS HAS GTP BOUND TO IT, WHILE THE ACTIVE REMARK 300 SITE RAS IS NUCLEOTIDE-FREE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Q, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN S 591 REMARK 465 MET S 592 REMARK 465 GLN S 593 REMARK 465 PRO S 594 REMARK 465 LYS S 595 REMARK 465 ALA S 596 REMARK 465 GLU S 654 REMARK 465 PRO S 655 REMARK 465 THR S 656 REMARK 465 GLU S 657 REMARK 465 ALA S 658 REMARK 465 ASP S 659 REMARK 465 ARG S 660 REMARK 465 ILE S 661 REMARK 465 ALA S 662 REMARK 465 ILE S 663 REMARK 465 GLU S 664 REMARK 465 ASN S 665 REMARK 465 GLY S 666 REMARK 465 ASP S 667 REMARK 465 GLN S 668 REMARK 465 PRO S 669 REMARK 465 LEU S 670 REMARK 465 SER S 671 REMARK 465 ALA S 672 REMARK 465 ARG S 744 REMARK 465 ASP S 745 REMARK 465 ASN S 746 REMARK 465 GLY S 747 REMARK 465 PRO S 748 REMARK 465 GLY S 749 REMARK 465 PRO S 1045 REMARK 465 ARG S 1046 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU Q 37 114.47 -177.14 REMARK 500 GLN Q 61 9.63 43.76 REMARK 500 GLU Q 62 5.51 -64.61 REMARK 500 TYR Q 64 52.82 -94.88 REMARK 500 ILE Q 84 -7.70 -59.95 REMARK 500 ASP Q 105 62.15 61.30 REMARK 500 ALA Q 122 46.54 -56.69 REMARK 500 ARG Q 149 -10.22 99.57 REMARK 500 LYS R 16 -38.97 -37.74 REMARK 500 ILE R 24 -70.03 -57.09 REMARK 500 GLN R 25 148.61 -38.90 REMARK 500 SER R 127 -54.77 -28.17 REMARK 500 ALA R 146 -38.71 -34.04 REMARK 500 ARG R 149 -8.20 65.76 REMARK 500 PRO S 570 172.91 -58.09 REMARK 500 ALA S 572 -1.85 -49.48 REMARK 500 PHE S 577 26.82 -79.07 REMARK 500 ASN S 585 -5.43 -151.39 REMARK 500 ASP S 620 68.04 -162.87 REMARK 500 TYR S 681 -68.38 -128.60 REMARK 500 ALA S 725 -72.78 -54.07 REMARK 500 SER S 756 -166.22 -101.48 REMARK 500 HIS S 764 -116.55 -131.95 REMARK 500 PRO S 768 137.85 -39.49 REMARK 500 PRO S 894 150.90 -48.68 REMARK 500 ILE S 922 170.85 -49.72 REMARK 500 PRO S 924 163.52 -49.50 REMARK 500 CYS S 980 69.82 -101.72 REMARK 500 SER S 985 -56.89 -22.33 REMARK 500 GLU S1017 77.40 -166.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Q1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER Q 17 OG REMARK 620 2 THR Q 35 OG1 92.3 REMARK 620 3 GTP Q1001 O2G 151.3 98.3 REMARK 620 4 GTP Q1001 O2B 81.9 173.8 85.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Q 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 R 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP Q 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BKD RELATED DB: PDB REMARK 900 RELATED ID: 1NVU RELATED DB: PDB REMARK 900 RELATED ID: 1NVV RELATED DB: PDB REMARK 900 RELATED ID: 1NVW RELATED DB: PDB DBREF 1NVX Q 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 1NVX R 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 1NVX S 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 SEQADV 1NVX GLY Q 59 UNP P01112 ALA 59 ENGINEERED MUTATION SEQADV 1NVX GLY R 59 UNP P01112 ALA 59 ENGINEERED MUTATION SEQRES 1 Q 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 Q 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 Q 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 Q 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 Q 166 LEU ASP ILE LEU ASP THR GLY GLY GLN GLU GLU TYR SER SEQRES 6 Q 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 Q 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 Q 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 Q 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 Q 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 Q 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 Q 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 Q 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 R 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 R 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 R 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 R 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 R 166 LEU ASP ILE LEU ASP THR GLY GLY GLN GLU GLU TYR SER SEQRES 6 R 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 R 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 R 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 R 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 R 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 R 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 R 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 R 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 S 481 GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE ALA SEQRES 2 S 481 GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU ASN SEQRES 3 S 481 MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA GLY SEQRES 4 S 481 THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS MET SEQRES 5 S 481 TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR THR SEQRES 6 S 481 TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER LEU SEQRES 7 S 481 ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO THR SEQRES 8 S 481 GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN PRO SEQRES 9 S 481 LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR ILE SEQRES 10 S 481 GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG HIS SEQRES 11 S 481 TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP ALA SEQRES 12 S 481 TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR VAL SEQRES 13 S 481 ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE THR SEQRES 14 S 481 LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN GLY SEQRES 15 S 481 PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO THR SEQRES 16 S 481 VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU THR SEQRES 17 S 481 PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA ARG SEQRES 18 S 481 GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA VAL SEQRES 19 S 481 GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS GLU SEQRES 20 S 481 ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET ILE SEQRES 21 S 481 ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS CYS SEQRES 22 S 481 ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA VAL SEQRES 23 S 481 VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN GLU SEQRES 24 S 481 LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER ALA SEQRES 25 S 481 MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR PHE SEQRES 26 S 481 GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU GLU SEQRES 27 S 481 ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR LEU SEQRES 28 S 481 ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO PHE SEQRES 29 S 481 PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU GLU SEQRES 30 S 481 GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU LEU SEQRES 31 S 481 ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE THR SEQRES 32 S 481 GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS LEU SEQRES 33 S 481 ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN LEU SEQRES 34 S 481 ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR ASP SEQRES 35 S 481 TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG ASN SEQRES 36 S 481 PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER TYR SEQRES 37 S 481 PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO ARG HET MG Q1002 1 HET GTP Q1001 32 HET PO4 R1003 5 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 4 MG MG 2+ FORMUL 5 GTP C10 H16 N5 O14 P3 FORMUL 6 PO4 O4 P 3- HELIX 1 1 GLY Q 15 ASN Q 26 1 12 HELIX 2 2 TYR Q 64 GLY Q 75 1 12 HELIX 3 3 ASN Q 86 ASP Q 105 1 20 HELIX 4 4 GLU Q 126 GLY Q 138 1 13 HELIX 5 5 GLY Q 151 HIS Q 166 1 16 HELIX 6 6 GLY R 15 GLN R 25 1 11 HELIX 7 7 TYR R 64 ALA R 66 5 3 HELIX 8 8 MET R 67 THR R 74 1 8 HELIX 9 9 ASN R 86 ASP R 105 1 20 HELIX 10 10 GLU R 126 GLY R 138 1 13 HELIX 11 11 SER R 145 ARG R 149 5 5 HELIX 12 12 GLY R 151 GLN R 165 1 15 HELIX 13 13 TYR S 575 GLU S 579 5 5 HELIX 14 14 THR S 605 THR S 614 1 10 HELIX 15 15 ASP S 620 TYR S 631 1 12 HELIX 16 16 ARG S 632 PHE S 634 5 3 HELIX 17 17 LYS S 636 GLU S 649 1 14 HELIX 18 18 GLU S 673 TYR S 681 1 9 HELIX 19 19 TYR S 681 HIS S 700 1 20 HELIX 20 20 PHE S 701 ARG S 706 1 6 HELIX 21 21 ASP S 707 VAL S 721 1 15 HELIX 22 22 GLY S 723 ALA S 743 1 21 HELIX 23 23 HIS S 780 ALA S 798 1 19 HELIX 24 24 GLN S 800 LEU S 804 5 5 HELIX 25 25 SER S 807 LYS S 811 5 5 HELIX 26 26 ASP S 813 SER S 818 1 6 HELIX 27 27 SER S 818 GLU S 841 1 24 HELIX 28 28 ASN S 844 ASN S 866 1 23 HELIX 29 29 ASN S 867 ASN S 879 1 13 HELIX 30 30 SER S 880 ARG S 885 1 6 HELIX 31 31 LEU S 886 GLN S 892 1 7 HELIX 32 32 PRO S 894 ILE S 922 1 29 HELIX 33 33 PHE S 930 GLY S 943 1 14 HELIX 34 34 PHE S 958 ASN S 976 1 19 HELIX 35 35 GLU S 984 ASN S 993 1 10 HELIX 36 36 MET S 1001 GLU S 1017 1 17 SHEET 1 A 6 GLU Q 37 ILE Q 46 0 SHEET 2 A 6 GLU Q 49 THR Q 58 -1 O LEU Q 53 N LYS Q 42 SHEET 3 A 6 THR Q 2 VAL Q 9 1 N LEU Q 6 O LEU Q 56 SHEET 4 A 6 GLY Q 77 ALA Q 83 1 O LEU Q 79 N VAL Q 7 SHEET 5 A 6 MET Q 111 ASN Q 116 1 O VAL Q 114 N CYS Q 80 SHEET 6 A 6 TYR Q 141 GLU Q 143 1 O ILE Q 142 N LEU Q 113 SHEET 1 B 6 ARG R 41 ILE R 46 0 SHEET 2 B 6 GLU R 49 ASP R 57 -1 O GLU R 49 N ILE R 46 SHEET 3 B 6 GLU R 3 GLY R 10 1 N LEU R 6 O LEU R 56 SHEET 4 B 6 GLY R 77 ALA R 83 1 O LEU R 79 N VAL R 7 SHEET 5 B 6 MET R 111 ASN R 116 1 O ASN R 116 N PHE R 82 SHEET 6 B 6 TYR R 141 THR R 144 1 O THR R 144 N GLY R 115 SHEET 1 C 4 ILE S 586 PHE S 588 0 SHEET 2 C 4 ILE S 601 GLY S 604 -1 O ALA S 603 N ILE S 587 SHEET 3 C 4 LYS S 953 ASN S 957 -1 O ILE S 956 N GLY S 604 SHEET 4 C 4 VAL S 947 ARG S 950 -1 N LEU S 948 O LEU S 955 LINK OG SER Q 17 MG MG Q1002 1555 1555 1.91 LINK OG1 THR Q 35 MG MG Q1002 1555 1555 1.96 LINK O2G GTP Q1001 MG MG Q1002 1555 1555 2.05 LINK O2B GTP Q1001 MG MG Q1002 1555 1555 2.15 CISPEP 1 PRO S 924 PRO S 925 0 -0.65 CISPEP 2 ASN S 1020 PRO S 1021 0 -0.02 SITE 1 AC1 4 SER Q 17 THR Q 35 ASP Q 57 GTP Q1001 SITE 1 AC2 7 ALA R 11 GLY R 12 GLY R 13 VAL R 14 SITE 2 AC2 7 GLY R 15 LYS R 16 SER R 17 SITE 1 AC3 24 GLY Q 12 GLY Q 13 VAL Q 14 GLY Q 15 SITE 2 AC3 24 LYS Q 16 SER Q 17 ALA Q 18 PHE Q 28 SITE 3 AC3 24 VAL Q 29 ASP Q 30 GLU Q 31 TYR Q 32 SITE 4 AC3 24 PRO Q 34 THR Q 35 THR Q 58 GLY Q 60 SITE 5 AC3 24 GLU Q 62 ASN Q 116 LYS Q 117 ASP Q 119 SITE 6 AC3 24 SER Q 145 ALA Q 146 LYS Q 147 MG Q1002 CRYST1 175.206 175.206 234.128 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004271 0.00000