HEADER DNA 05-FEB-03 1NVY TITLE STRONTIUM BOUND TO THE HOLLIDAY JUNCTION SEQUENCE D(TCGGTACCGA)4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D(TCGGTACCGA)4; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHEZIED KEYWDS HOLLIDAY JUNCTION, STRONTIUM, SR2+, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.J.CARDIN,J.H.THORPE,B.C.GALE,S.C.M.TEIXEIRA REVDAT 3 14-FEB-24 1NVY 1 REMARK LINK REVDAT 2 24-FEB-09 1NVY 1 VERSN REVDAT 1 25-FEB-03 1NVY 0 JRNL AUTH C.J.CARDIN,J.H.THORPE,B.C.GALE,S.C.M.TEIXEIRA JRNL TITL STRONTIUM, A MAD TAERGET FOR THE DNA HOLLIDAY JUNCTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 8443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.26000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 452 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 192 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 694 ; 2.442 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 484 ; 1.707 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 60 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 210 ; 0.022 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 4 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 56 ; 0.130 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 201 ; 0.228 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 108 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 14 ; 0.107 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.086 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.351 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.076 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 452 ; 2.883 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 694 ; 3.807 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 452 ; 2.042 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 112 ; 6.942 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 404 ; 5.738 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1NVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9470, 0.7301, 0.7667, 0.7670 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.88 REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SRCL2, MPD, NACACODYLATE , PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.86700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 12.66000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.86700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 12.66000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 51.18685 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.26818 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 567 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 1 O3' DT A 1 C3' -0.040 REMARK 500 DG A 9 C5 DG A 9 N7 -0.053 REMARK 500 DG B 4 O3' DG B 4 C3' -0.049 REMARK 500 DT B 5 O3' DT B 5 C3' -0.053 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 1 N3 - C4 - O4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC A 2 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC A 2 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT A 5 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT A 5 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA A 6 C6 - N1 - C2 ANGL. DEV. = 4.8 DEGREES REMARK 500 DA A 6 N1 - C2 - N3 ANGL. DEV. = -6.0 DEGREES REMARK 500 DA A 6 C8 - N9 - C4 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA A 6 N9 - C4 - C5 ANGL. DEV. = -3.4 DEGREES REMARK 500 DA A 6 N1 - C6 - N6 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC A 7 C2 - N3 - C4 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC A 7 N3 - C4 - C5 ANGL. DEV. = -3.5 DEGREES REMARK 500 DC A 7 C5 - C6 - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC A 8 O4' - C1' - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DT B 1 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC B 2 C5 - C4 - N4 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 4 C4 - C5 - N7 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT B 5 N3 - C4 - O4 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA B 6 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA B 6 N1 - C6 - N6 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC B 7 N1 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC B 8 O4' - C1' - N1 ANGL. DEV. = -6.8 DEGREES REMARK 500 DC B 8 C6 - N1 - C2 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA B 10 C6 - N1 - C2 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA B 10 C5 - C6 - N1 ANGL. DEV. = -3.3 DEGREES REMARK 500 DA B 10 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 103 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 489 O REMARK 620 2 HOH A 490 O 76.3 REMARK 620 3 HOH A 491 O 81.7 78.1 REMARK 620 4 HOH B 488 O 127.5 136.1 71.4 REMARK 620 5 HOH B 492 O 148.2 73.7 102.0 82.5 REMARK 620 6 HOH B 493 O 113.7 131.4 148.0 77.3 79.7 REMARK 620 7 HOH B 638 O 87.7 67.7 145.7 137.4 71.4 65.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 104 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 496 O REMARK 620 2 HOH A 497 O 137.6 REMARK 620 3 HOH A 499 O 67.3 70.4 REMARK 620 4 HOH A 500 O 63.1 148.5 120.7 REMARK 620 5 HOH B 494 O 118.0 91.6 136.9 95.3 REMARK 620 6 HOH B 495 O 133.7 82.0 138.3 71.2 72.1 REMARK 620 7 HOH B 498 O 73.3 93.0 73.8 118.1 68.4 140.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 101 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 472 O REMARK 620 2 HOH B 473 O 78.1 REMARK 620 3 HOH B 474 O 78.9 70.0 REMARK 620 4 HOH B 475 O 142.1 73.9 67.8 REMARK 620 5 HOH B 476 O 85.4 146.2 78.1 104.3 REMARK 620 6 HOH B 477 O 76.0 129.2 142.9 141.9 73.1 REMARK 620 7 HOH B 478 O 143.7 135.3 121.0 72.5 71.4 70.8 REMARK 620 8 HOH B 479 O 92.9 67.2 137.1 99.2 143.7 71.3 90.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 102 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 480 O REMARK 620 2 HOH B 481 O 76.8 REMARK 620 3 HOH B 482 O 147.2 76.1 REMARK 620 4 HOH B 483 O 64.8 134.3 147.3 REMARK 620 5 HOH B 484 O 85.8 74.6 69.5 123.5 REMARK 620 6 HOH B 485 O 136.7 136.0 76.1 72.3 124.8 REMARK 620 7 HOH B 486 O 103.5 146.2 89.2 70.3 71.8 65.8 REMARK 620 8 HOH B 487 O 92.4 72.5 96.8 84.8 146.6 77.6 140.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 105 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 466 O REMARK 620 2 HOH B 467 O 142.4 REMARK 620 3 HOH B 468 O 75.6 110.8 REMARK 620 4 HOH B 469 O 83.2 68.2 139.5 REMARK 620 5 HOH B 470 O 86.3 63.3 70.6 74.0 REMARK 620 6 HOH B 471 O 100.2 95.7 141.8 75.3 147.6 REMARK 620 7 HOH B 639 O 74.3 142.4 81.4 125.4 149.2 61.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR B 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: UD0018 RELATED DB: NDB REMARK 900 TCGGTACCGA HOLLIDAY JUNCTION REMARK 900 RELATED ID: UD0021 RELATED DB: NDB REMARK 900 TCGGTACCGA HOLLIDAY JUNCTION REMARK 900 RELATED ID: UD0023 RELATED DB: NDB REMARK 900 TCGGTACCGA HOLLIDAY JUNCTION DBREF 1NVY A 1 10 PDB 1NVY 1NVY 1 10 DBREF 1NVY B 1 10 PDB 1NVY 1NVY 1 10 SEQRES 1 A 10 DT DC DG DG DT DA DC DC DG DA SEQRES 1 B 10 DT DC DG DG DT DA DC DC DG DA HET SR A 103 1 HET SR A 104 1 HET SR B 101 1 HET SR B 102 1 HET SR B 105 1 HETNAM SR STRONTIUM ION FORMUL 3 SR 5(SR 2+) FORMUL 8 HOH *107(H2 O) LINK SR SR A 103 O HOH A 489 1555 1555 2.89 LINK SR SR A 103 O HOH A 490 1555 1555 2.52 LINK SR SR A 103 O HOH A 491 1555 1555 2.64 LINK SR SR A 103 O HOH B 488 1555 1555 2.64 LINK SR SR A 103 O HOH B 492 1555 1555 2.53 LINK SR SR A 103 O HOH B 493 1555 1555 2.64 LINK SR SR A 103 O HOH B 638 1555 1555 2.41 LINK SR SR A 104 O HOH A 496 1555 1555 2.67 LINK SR SR A 104 O HOH A 497 1555 1555 2.55 LINK SR SR A 104 O HOH A 499 1555 1555 2.75 LINK SR SR A 104 O HOH A 500 1555 1555 2.65 LINK SR SR A 104 O HOH B 494 1555 1555 2.73 LINK SR SR A 104 O HOH B 495 1555 1555 2.51 LINK SR SR A 104 O HOH B 498 1555 1555 2.70 LINK SR SR B 101 O HOH B 472 1555 1555 2.50 LINK SR SR B 101 O HOH B 473 1555 1555 2.55 LINK SR SR B 101 O HOH B 474 1555 1555 2.65 LINK SR SR B 101 O HOH B 475 1555 1555 2.67 LINK SR SR B 101 O HOH B 476 1555 1555 2.53 LINK SR SR B 101 O HOH B 477 1555 1555 2.62 LINK SR SR B 101 O HOH B 478 1555 1555 2.62 LINK SR SR B 101 O HOH B 479 1555 1555 2.69 LINK SR SR B 102 O HOH B 480 1555 1555 2.60 LINK SR SR B 102 O HOH B 481 1555 1555 2.67 LINK SR SR B 102 O HOH B 482 1555 1555 2.60 LINK SR SR B 102 O HOH B 483 1555 1555 2.64 LINK SR SR B 102 O HOH B 484 1555 1555 2.52 LINK SR SR B 102 O HOH B 485 1555 1555 2.73 LINK SR SR B 102 O HOH B 486 1555 1555 2.69 LINK SR SR B 102 O HOH B 487 1555 1555 2.75 LINK SR SR B 105 O HOH B 466 1555 1555 2.39 LINK SR SR B 105 O HOH B 467 1555 1555 2.83 LINK SR SR B 105 O HOH B 468 1555 1555 2.54 LINK SR SR B 105 O HOH B 469 1555 1555 2.68 LINK SR SR B 105 O HOH B 470 1555 1555 2.56 LINK SR SR B 105 O HOH B 471 1555 1555 2.60 LINK SR SR B 105 O HOH B 639 1555 1555 2.43 SITE 1 AC1 8 HOH B 472 HOH B 473 HOH B 474 HOH B 475 SITE 2 AC1 8 HOH B 476 HOH B 477 HOH B 478 HOH B 479 SITE 1 AC2 8 HOH B 480 HOH B 481 HOH B 482 HOH B 483 SITE 2 AC2 8 HOH B 484 HOH B 485 HOH B 486 HOH B 487 SITE 1 AC3 7 HOH A 489 HOH A 490 HOH A 491 HOH B 488 SITE 2 AC3 7 HOH B 492 HOH B 493 HOH B 638 SITE 1 AC4 7 HOH A 496 HOH A 497 HOH A 499 HOH A 500 SITE 2 AC4 7 HOH B 494 HOH B 495 HOH B 498 SITE 1 AC5 7 HOH B 466 HOH B 467 HOH B 468 HOH B 469 SITE 2 AC5 7 HOH B 470 HOH B 471 HOH B 639 CRYST1 63.734 25.320 36.493 90.00 110.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015690 0.000000 0.005744 0.00000 SCALE2 0.000000 0.039494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029181 0.00000