data_1NXR # _entry.id 1NXR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NXR pdb_00001nxr 10.2210/pdb1nxr/pdb WWPDB D_1000175408 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NXR _pdbx_database_status.recvd_initial_deposition_date 1997-02-21 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fedoroff, O.Y.' 1 'Ge, Y.' 2 'Reid, B.R.' 3 # _citation.id primary _citation.title 'Solution structure of r(gaggacug):d(CAGTCCTC) hybrid: implications for the initiation of HIV-1 (+)-strand synthesis.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 269 _citation.page_first 225 _citation.page_last 239 _citation.year 1997 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9191067 _citation.pdbx_database_id_DOI 10.1006/jmbi.1997.1024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fedoroff, O.Y.' 1 ? primary 'Ge, Y.' 2 ? primary 'Reid, B.R.' 3 ? # _cell.entry_id 1NXR _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1NXR _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*GP*TP*CP*CP*TP*C)-3') ; 2362.568 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*GP*AP*GP*GP*AP*CP*UP*G)-3') ; 2605.625 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'RNA/DNA HYBRID' 2 'RNA/DNA HYBRID' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DG)(DT)(DC)(DC)(DT)(DC)' CAGTCCTC A ? 2 polyribonucleotide no no GAGGACUG GAGGACUG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DG n 1 4 DT n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DC n 2 1 G n 2 2 A n 2 3 G n 2 4 G n 2 5 A n 2 6 C n 2 7 U n 2 8 G n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1NXR 1NXR ? ? ? 2 2 PDB 1NXR 1NXR ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1NXR A 1 ? 8 ? 1NXR 1 ? 8 ? 1 8 2 2 1NXR B 1 ? 8 ? 1NXR 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 'NOESY 120' 1 2 1 180 1 3 1 240 1 4 1 '300 MS : DQF-COSY' 1 5 1 E.COSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX-750 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 750 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1NXR _pdbx_nmr_refine.method 'DISTANCE GEOMETRY, : RESTRAINED MOLECULAR : DYNAMICS' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1NXR _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 18 _pdbx_nmr_ensemble.conformer_selection_criteria RMSD _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement 'DISCOVER, WITH AMBER FORCE FIELD' FIELD 'BIOSYM TECHNOLOGIES' 1 'structure solution' BIOSYM ? ? 2 # _exptl.entry_id 1NXR _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1NXR _struct.title 'HIV-1 POLYPURINE HYBRID, R(GAGGACUG):D(CAGTCCTC), NMR, 18 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1NXR _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'HIV-1 POLYPURINE HYBRID, RNA/DNA HYBRID, RNASE H, REVERSE TRANSCRIPTASE, DNA-RNA COMPLEX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B G 8 N1 ? ? A DC 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B G 8 O6 ? ? A DC 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B G 8 N2 ? ? A DC 1 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B U 7 N3 ? ? A DA 2 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B U 7 O4 ? ? A DA 2 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B C 6 N3 ? ? A DG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B C 6 O2 ? ? A DG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B C 6 N4 ? ? A DG 3 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B A 5 N1 ? ? A DT 4 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B A 5 N6 ? ? A DT 4 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B G 4 N1 ? ? A DC 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B G 4 O6 ? ? A DC 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B G 4 N2 ? ? A DC 5 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B G 3 N1 ? ? A DC 6 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B G 3 O6 ? ? A DC 6 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B G 3 N2 ? ? A DC 6 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B A 2 N1 ? ? A DT 7 B A 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B A 2 N6 ? ? A DT 7 B A 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A DC 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A DC 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A DC 8 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1NXR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1NXR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DC 8 8 8 DC C A . n B 2 1 G 1 1 1 G G B . n B 2 2 A 2 2 2 A A B . n B 2 3 G 3 3 3 G G B . n B 2 4 G 4 4 4 G G B . n B 2 5 A 5 5 5 A A B . n B 2 6 C 6 6 6 C C B . n B 2 7 U 7 7 7 U U B . n B 2 8 G 8 8 8 G G B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-07-07 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' # _software.name AMBER _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.18 108.30 3.88 0.30 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.26 108.30 4.96 0.30 N 3 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.27 108.30 3.97 0.30 N 4 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.92 108.30 5.62 0.30 N 5 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.34 108.30 4.04 0.30 N 6 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.87 108.30 3.57 0.30 N 7 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.89 108.30 3.59 0.30 N 8 1 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.47 108.50 5.97 0.70 N 9 1 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.43 108.50 5.93 0.70 N 10 1 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.88 108.50 6.38 0.70 N 11 1 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.64 108.50 6.14 0.70 N 12 1 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.22 108.50 6.72 0.70 N 13 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.44 108.30 6.14 0.30 N 14 2 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.24 108.30 1.94 0.30 N 15 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.34 108.30 5.04 0.30 N 16 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.38 108.30 4.08 0.30 N 17 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.07 108.30 5.77 0.30 N 18 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.39 108.30 4.09 0.30 N 19 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.81 108.30 3.51 0.30 N 20 2 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.81 108.30 3.51 0.30 N 21 2 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.81 108.50 6.31 0.70 N 22 2 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.26 108.50 5.76 0.70 N 23 2 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.68 108.50 6.18 0.70 N 24 2 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.89 108.50 6.39 0.70 N 25 2 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.42 108.50 6.92 0.70 N 26 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.24 108.30 4.94 0.30 N 27 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.43 108.30 5.13 0.30 N 28 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.36 108.30 4.06 0.30 N 29 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.02 108.30 5.72 0.30 N 30 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.35 108.30 4.05 0.30 N 31 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.84 108.30 3.54 0.30 N 32 3 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.88 108.30 3.58 0.30 N 33 3 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.63 108.50 6.13 0.70 N 34 3 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.30 108.50 5.80 0.70 N 35 3 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.51 108.50 6.01 0.70 N 36 3 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.69 108.50 6.19 0.70 N 37 3 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.35 108.50 6.85 0.70 N 38 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.03 108.30 5.73 0.30 N 39 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.33 108.30 5.03 0.30 N 40 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.36 108.30 4.06 0.30 N 41 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.01 108.30 5.71 0.30 N 42 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.37 108.30 4.07 0.30 N 43 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.23 108.30 2.93 0.30 N 44 4 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.73 108.30 3.43 0.30 N 45 4 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 115.40 108.50 6.90 0.70 N 46 4 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.28 108.50 5.78 0.70 N 47 4 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.79 108.50 6.29 0.70 N 48 4 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.85 108.50 6.35 0.70 N 49 4 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.19 108.50 6.69 0.70 N 50 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.32 108.30 6.02 0.30 N 51 5 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.26 108.30 1.96 0.30 N 52 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.47 108.30 5.17 0.30 N 53 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.57 108.30 4.27 0.30 N 54 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.12 108.30 5.82 0.30 N 55 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.51 108.30 4.21 0.30 N 56 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.72 108.30 3.42 0.30 N 57 5 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.90 108.30 3.60 0.30 N 58 5 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 115.05 108.50 6.55 0.70 N 59 5 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.35 108.50 5.85 0.70 N 60 5 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.57 108.50 6.07 0.70 N 61 5 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.70 108.50 6.20 0.70 N 62 5 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.14 108.50 6.64 0.70 N 63 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.26 108.30 5.96 0.30 N 64 6 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.15 108.30 1.85 0.30 N 65 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.39 108.30 5.09 0.30 N 66 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.38 108.30 4.08 0.30 N 67 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.08 108.30 5.78 0.30 N 68 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.46 108.30 4.16 0.30 N 69 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.47 108.30 3.17 0.30 N 70 6 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.87 108.30 3.57 0.30 N 71 6 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.63 108.50 6.13 0.70 N 72 6 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.25 108.50 5.75 0.70 N 73 6 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.52 108.50 6.02 0.70 N 74 6 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.71 108.50 6.21 0.70 N 75 6 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.17 108.50 6.67 0.70 N 76 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.16 108.30 4.86 0.30 N 77 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.36 108.30 5.06 0.30 N 78 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.27 108.30 3.97 0.30 N 79 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.38 108.30 6.08 0.30 N 80 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.95 108.30 3.65 0.30 N 81 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.79 108.30 3.49 0.30 N 82 7 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.75 108.30 3.45 0.30 N 83 7 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.68 108.50 6.18 0.70 N 84 7 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.74 108.50 6.24 0.70 N 85 7 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.52 108.50 6.02 0.70 N 86 7 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.90 108.50 6.40 0.70 N 87 7 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.43 108.50 6.93 0.70 N 88 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.78 108.30 3.48 0.30 N 89 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.19 108.30 4.89 0.30 N 90 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.48 108.30 4.18 0.30 N 91 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.37 108.30 6.07 0.30 N 92 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.94 108.30 3.64 0.30 N 93 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.36 108.30 3.06 0.30 N 94 8 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.40 108.30 3.10 0.30 N 95 8 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.44 108.50 5.94 0.70 N 96 8 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.47 108.50 5.97 0.70 N 97 8 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.43 108.50 5.93 0.70 N 98 8 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.86 108.50 6.36 0.70 N 99 8 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.46 108.50 6.96 0.70 N 100 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.78 108.30 3.48 0.30 N 101 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.11 108.30 4.81 0.30 N 102 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.11 108.30 3.81 0.30 N 103 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.42 108.30 6.12 0.30 N 104 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.92 108.30 3.62 0.30 N 105 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.73 108.30 3.43 0.30 N 106 9 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.61 108.30 3.31 0.30 N 107 9 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.63 108.50 6.13 0.70 N 108 9 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.28 108.50 5.78 0.70 N 109 9 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.78 108.50 6.28 0.70 N 110 9 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.67 108.50 6.17 0.70 N 111 9 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.20 108.50 6.70 0.70 N 112 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.06 108.30 4.76 0.30 N 113 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.47 108.30 5.17 0.30 N 114 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.34 108.30 4.04 0.30 N 115 10 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.30 108.30 6.00 0.30 N 116 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.76 108.30 3.46 0.30 N 117 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.21 108.30 2.91 0.30 N 118 10 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.19 108.30 2.89 0.30 N 119 10 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.90 108.50 6.40 0.70 N 120 10 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.05 108.50 5.55 0.70 N 121 10 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.57 108.50 6.07 0.70 N 122 10 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.78 108.50 6.28 0.70 N 123 10 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.44 108.50 6.94 0.70 N 124 11 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.31 108.30 6.01 0.30 N 125 11 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.39 108.30 2.09 0.30 N 126 11 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.42 108.30 5.12 0.30 N 127 11 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.21 108.30 3.91 0.30 N 128 11 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.21 108.30 5.91 0.30 N 129 11 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.81 108.30 3.51 0.30 N 130 11 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.42 108.30 3.12 0.30 N 131 11 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.49 108.30 3.19 0.30 N 132 11 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.77 108.50 6.27 0.70 N 133 11 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 114.15 108.50 5.65 0.70 N 134 11 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.28 108.50 5.78 0.70 N 135 11 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.69 108.50 6.19 0.70 N 136 11 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.39 108.50 6.89 0.70 N 137 12 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.94 108.30 3.64 0.30 N 138 12 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.19 108.30 4.89 0.30 N 139 12 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.92 108.30 3.62 0.30 N 140 12 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.95 108.30 5.65 0.30 N 141 12 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.73 108.30 3.43 0.30 N 142 12 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.95 108.30 2.65 0.30 N 143 12 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.03 108.30 2.73 0.30 N 144 12 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 115.12 108.50 6.62 0.70 N 145 12 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 113.75 108.50 5.25 0.70 N 146 12 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.56 108.50 6.06 0.70 N 147 12 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.86 108.50 6.36 0.70 N 148 12 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.57 108.50 7.07 0.70 N 149 13 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.31 108.30 6.01 0.30 N 150 13 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.28 108.30 4.98 0.30 N 151 13 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.95 108.30 3.65 0.30 N 152 13 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.02 108.30 5.72 0.30 N 153 13 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.73 108.30 3.43 0.30 N 154 13 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.94 108.30 2.64 0.30 N 155 13 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.98 108.30 2.68 0.30 N 156 13 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 115.09 108.50 6.59 0.70 N 157 13 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 113.57 108.50 5.07 0.70 N 158 13 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.52 108.50 6.02 0.70 N 159 13 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.86 108.50 6.36 0.70 N 160 13 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.35 108.50 6.85 0.70 N 161 14 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.33 108.30 6.03 0.30 N 162 14 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.24 108.30 4.94 0.30 N 163 14 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.87 108.30 3.57 0.30 N 164 14 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.92 108.30 5.62 0.30 N 165 14 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.67 108.30 3.37 0.30 N 166 14 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.92 108.30 2.62 0.30 N 167 14 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.06 108.30 2.76 0.30 N 168 14 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 115.31 108.50 6.81 0.70 N 169 14 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 113.61 108.50 5.11 0.70 N 170 14 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.79 108.50 6.29 0.70 N 171 14 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.81 108.50 6.31 0.70 N 172 14 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.49 108.50 6.99 0.70 N 173 15 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.26 108.30 5.96 0.30 N 174 15 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.25 108.30 4.95 0.30 N 175 15 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.91 108.30 3.61 0.30 N 176 15 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.97 108.30 5.67 0.30 N 177 15 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.64 108.30 3.34 0.30 N 178 15 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.97 108.30 2.67 0.30 N 179 15 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.06 108.30 2.76 0.30 N 180 15 "C1'" B G 1 ? ? "O4'" B G 1 ? ? "C4'" B G 1 ? ? 104.99 109.70 -4.71 0.70 N 181 15 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 116.58 108.50 8.08 0.70 N 182 15 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 113.63 108.50 5.13 0.70 N 183 15 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.75 108.50 6.25 0.70 N 184 15 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.73 108.50 6.23 0.70 N 185 15 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.27 108.50 6.77 0.70 N 186 16 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.33 108.30 6.03 0.30 N 187 16 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.25 108.30 4.95 0.30 N 188 16 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.00 108.30 3.70 0.30 N 189 16 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.97 108.30 5.67 0.30 N 190 16 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.65 108.30 3.35 0.30 N 191 16 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.05 108.30 2.75 0.30 N 192 16 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.24 108.30 2.94 0.30 N 193 16 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 115.14 108.50 6.64 0.70 N 194 16 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 113.60 108.50 5.10 0.70 N 195 16 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.70 108.50 6.20 0.70 N 196 16 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.80 108.50 6.30 0.70 N 197 16 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.39 108.50 6.89 0.70 N 198 17 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 114.41 108.30 6.11 0.30 N 199 17 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.20 108.30 4.90 0.30 N 200 17 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.93 108.30 3.63 0.30 N 201 17 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 113.97 108.30 5.67 0.30 N 202 17 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.78 108.30 3.48 0.30 N 203 17 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.19 108.30 2.89 0.30 N 204 17 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.11 108.30 2.81 0.30 N 205 17 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 115.21 108.50 6.71 0.70 N 206 17 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 113.57 108.50 5.07 0.70 N 207 17 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.69 108.50 6.19 0.70 N 208 17 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.78 108.50 6.28 0.70 N 209 17 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.35 108.50 6.85 0.70 N 210 18 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.93 108.30 3.63 0.30 N 211 18 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 113.21 108.30 4.91 0.30 N 212 18 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.02 108.30 3.72 0.30 N 213 18 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.02 108.30 5.72 0.30 N 214 18 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.71 108.30 3.41 0.30 N 215 18 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.92 108.30 2.62 0.30 N 216 18 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.04 108.30 2.74 0.30 N 217 18 "C3'" B G 1 ? ? "C2'" B G 1 ? ? "C1'" B G 1 ? ? 106.35 101.50 4.85 0.80 N 218 18 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 114.86 108.50 6.36 0.70 N 219 18 "O4'" B G 3 ? ? "C1'" B G 3 ? ? N9 B G 3 ? ? 113.58 108.50 5.08 0.70 N 220 18 "O4'" B G 4 ? ? "C1'" B G 4 ? ? N9 B G 4 ? ? 114.59 108.50 6.09 0.70 N 221 18 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 114.74 108.50 6.24 0.70 N 222 18 "O4'" B C 6 ? ? "C1'" B C 6 ? ? N1 B C 6 ? ? 115.43 108.50 6.93 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 6 ? ? 0.062 'SIDE CHAIN' 2 1 G B 1 ? ? 0.066 'SIDE CHAIN' 3 1 U B 7 ? ? 0.093 'SIDE CHAIN' 4 2 DC A 6 ? ? 0.060 'SIDE CHAIN' 5 2 U B 7 ? ? 0.095 'SIDE CHAIN' 6 3 DC A 6 ? ? 0.061 'SIDE CHAIN' 7 3 G B 1 ? ? 0.069 'SIDE CHAIN' 8 3 U B 7 ? ? 0.097 'SIDE CHAIN' 9 4 DC A 6 ? ? 0.072 'SIDE CHAIN' 10 4 U B 7 ? ? 0.100 'SIDE CHAIN' 11 5 DC A 6 ? ? 0.060 'SIDE CHAIN' 12 5 U B 7 ? ? 0.111 'SIDE CHAIN' 13 6 DC A 6 ? ? 0.056 'SIDE CHAIN' 14 6 G B 1 ? ? 0.064 'SIDE CHAIN' 15 6 U B 7 ? ? 0.098 'SIDE CHAIN' 16 7 DC A 6 ? ? 0.065 'SIDE CHAIN' 17 7 DT A 7 ? ? 0.065 'SIDE CHAIN' 18 7 G B 1 ? ? 0.065 'SIDE CHAIN' 19 7 U B 7 ? ? 0.095 'SIDE CHAIN' 20 8 U B 7 ? ? 0.094 'SIDE CHAIN' 21 9 DC A 6 ? ? 0.057 'SIDE CHAIN' 22 9 G B 1 ? ? 0.069 'SIDE CHAIN' 23 9 U B 7 ? ? 0.099 'SIDE CHAIN' 24 10 DG A 3 ? ? 0.064 'SIDE CHAIN' 25 10 U B 7 ? ? 0.105 'SIDE CHAIN' 26 11 DC A 6 ? ? 0.067 'SIDE CHAIN' 27 11 G B 1 ? ? 0.074 'SIDE CHAIN' 28 11 U B 7 ? ? 0.094 'SIDE CHAIN' 29 12 DC A 6 ? ? 0.064 'SIDE CHAIN' 30 12 U B 7 ? ? 0.093 'SIDE CHAIN' 31 13 DC A 6 ? ? 0.065 'SIDE CHAIN' 32 13 U B 7 ? ? 0.089 'SIDE CHAIN' 33 14 DC A 6 ? ? 0.066 'SIDE CHAIN' 34 14 U B 7 ? ? 0.094 'SIDE CHAIN' 35 15 DC A 6 ? ? 0.064 'SIDE CHAIN' 36 15 U B 7 ? ? 0.089 'SIDE CHAIN' 37 16 DC A 6 ? ? 0.071 'SIDE CHAIN' 38 16 U B 7 ? ? 0.090 'SIDE CHAIN' 39 17 U B 7 ? ? 0.088 'SIDE CHAIN' 40 18 DC A 6 ? ? 0.064 'SIDE CHAIN' 41 18 U B 7 ? ? 0.088 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1NXR 'double helix' 1NXR 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B G 8 1_555 0.708 -0.234 -0.293 1.412 -19.267 1.763 1 A_DC1:G8_B A 1 ? B 8 ? 19 1 1 A DA 2 1_555 B U 7 1_555 0.127 0.018 0.100 -2.791 -11.516 4.568 2 A_DA2:U7_B A 2 ? B 7 ? 20 1 1 A DG 3 1_555 B C 6 1_555 0.292 -0.060 0.041 1.733 -20.679 -1.847 3 A_DG3:C6_B A 3 ? B 6 ? 19 1 1 A DT 4 1_555 B A 5 1_555 0.442 0.012 -0.064 9.764 -16.186 2.588 4 A_DT4:A5_B A 4 ? B 5 ? 20 1 1 A DC 5 1_555 B G 4 1_555 -0.375 -0.033 0.126 3.525 -15.350 -2.180 5 A_DC5:G4_B A 5 ? B 4 ? 19 1 1 A DC 6 1_555 B G 3 1_555 0.786 -0.199 -0.142 8.707 -4.878 -0.682 6 A_DC6:G3_B A 6 ? B 3 ? 19 1 1 A DT 7 1_555 B A 2 1_555 0.582 -0.117 -0.416 13.482 -8.307 1.099 7 A_DT7:A2_B A 7 ? B 2 ? 20 1 1 A DC 8 1_555 B G 1 1_555 -0.274 -0.036 -0.327 -4.400 -21.630 3.844 8 A_DC8:G1_B A 8 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B G 8 1_555 A DA 2 1_555 B U 7 1_555 0.007 -1.499 3.228 2.918 13.970 32.323 -4.339 0.378 2.389 23.705 -4.951 35.256 1 AA_DC1DA2:U7G8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DA 2 1_555 B U 7 1_555 A DG 3 1_555 B C 6 1_555 -0.555 -1.264 3.188 -3.733 3.255 30.593 -2.971 0.344 3.085 6.119 7.017 30.982 2 AA_DA2DG3:C6U7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DG 3 1_555 B C 6 1_555 A DT 4 1_555 B A 5 1_555 0.300 -1.762 2.987 -1.138 1.013 32.311 -3.324 -0.720 2.920 1.819 2.044 32.346 3 AA_DG3DT4:A5C6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DT 4 1_555 B A 5 1_555 A DC 5 1_555 B G 4 1_555 -0.534 -2.139 3.153 -6.018 6.378 26.223 -5.886 -0.209 2.625 13.582 12.816 27.626 4 AA_DT4DC5:G4A5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DC 5 1_555 B G 4 1_555 A DC 6 1_555 B G 3 1_555 0.062 -1.992 3.191 0.145 6.440 32.839 -4.438 -0.086 2.762 11.256 -0.254 33.448 5 AA_DC5DC6:G3G4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DC 6 1_555 B G 3 1_555 A DT 7 1_555 B A 2 1_555 0.108 -1.747 3.025 1.066 3.614 26.429 -4.622 0.014 2.768 7.853 -2.316 26.692 6 AA_DC6DT7:A2G3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A DT 7 1_555 B A 2 1_555 A DC 8 1_555 B G 1 1_555 0.312 -2.090 3.322 3.554 19.699 33.258 -5.235 -0.096 1.865 31.159 -5.621 38.671 7 AA_DT7DC8:G1A2_BB A 7 ? B 2 ? A 8 ? B 1 ? #