data_1NYB # _entry.id 1NYB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1NYB pdb_00001nyb 10.2210/pdb1nyb/pdb RCSB RCSB018346 ? ? WWPDB D_1000018346 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-06-24 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2022-02-23 5 'Structure model' 2 1 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_atom_site.auth_atom_id' 5 4 'Structure model' '_atom_site.label_atom_id' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_pdbx_nmr_software.name' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'Chirality error at the CB center of SER A 9. There are several chirality errors in chain B.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1NYB _pdbx_database_status.recvd_initial_deposition_date 2003-02-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1A4T _pdbx_database_related.details 'Solution Structure Of Phage P22 N Peptide-Box B RNA Complex, NMR, 20 Structures' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cilley, C.D.' 1 'Williamson, J.R.' 2 # _citation.id primary _citation.title 'Structural mimicry in the phage phi21 N peptide-boxB RNA complex' _citation.journal_abbrev RNA _citation.journal_volume 9 _citation.page_first 663 _citation.page_last 676 _citation.year 2003 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12756325 _citation.pdbx_database_id_DOI 10.1261/rna.2189203 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cilley, C.D.' 1 ? primary 'Williamson, J.R.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'BoxB RNA' 7660.590 1 ? ? ? ? 2 polymer man 'Probable regulatory protein N' 2584.977 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGUUCACCUCUAACCGGGUGAGCC GGUUCACCUCUAACCGGGUGAGCC B ? 2 'polypeptide(L)' no no ESKGTAKSRYKARRAELIAERR ESKGTAKSRYKARRAELIAERR A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 U n 1 5 C n 1 6 A n 1 7 C n 1 8 C n 1 9 U n 1 10 C n 1 11 U n 1 12 A n 1 13 A n 1 14 C n 1 15 C n 1 16 G n 1 17 G n 1 18 G n 1 19 U n 1 20 G n 1 21 A n 1 22 G n 1 23 C n 1 24 C n 2 1 GLU n 2 2 SER n 2 3 LYS n 2 4 GLY n 2 5 THR n 2 6 ALA n 2 7 LYS n 2 8 SER n 2 9 ARG n 2 10 TYR n 2 11 LYS n 2 12 ALA n 2 13 ARG n 2 14 ARG n 2 15 ALA n 2 16 GLU n 2 17 LEU n 2 18 ILE n 2 19 ALA n 2 20 GLU n 2 21 ARG n 2 22 ARG n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene N _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage phi21' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10737 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesis of the RNA fragment from the Bacteriophage phi21 boxB' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 G 2 2 2 G G B . n A 1 3 U 3 3 3 U U B . n A 1 4 U 4 4 4 U U B . n A 1 5 C 5 5 5 C C B . n A 1 6 A 6 6 6 A A B . n A 1 7 C 7 7 7 C C B . n A 1 8 C 8 8 8 C C B . n A 1 9 U 9 9 9 U U B . n A 1 10 C 10 10 10 C C B . n A 1 11 U 11 11 11 U U B . n A 1 12 A 12 12 12 A A B . n A 1 13 A 13 13 13 A A B . n A 1 14 C 14 14 14 C C B . n A 1 15 C 15 15 15 C C B . n A 1 16 G 16 16 16 G G B . n A 1 17 G 17 17 17 G G B . n A 1 18 G 18 18 18 G G B . n A 1 19 U 19 19 19 U U B . n A 1 20 G 20 20 20 G G B . n A 1 21 A 21 21 21 A A B . n A 1 22 G 22 22 22 G G B . n A 1 23 C 23 23 23 C C B . n A 1 24 C 24 24 24 C C B . n B 2 1 GLU 1 8 8 GLU GLU A . n B 2 2 SER 2 9 9 SER SER A . n B 2 3 LYS 3 10 10 LYS LYS A . n B 2 4 GLY 4 11 11 GLY GLY A . n B 2 5 THR 5 12 12 THR THR A . n B 2 6 ALA 6 13 13 ALA ALA A . n B 2 7 LYS 7 14 14 LYS LYS A . n B 2 8 SER 8 15 15 SER SER A . n B 2 9 ARG 9 16 16 ARG ARG A . n B 2 10 TYR 10 17 17 TYR TYR A . n B 2 11 LYS 11 18 18 LYS LYS A . n B 2 12 ALA 12 19 19 ALA ALA A . n B 2 13 ARG 13 20 20 ARG ARG A . n B 2 14 ARG 14 21 21 ARG ARG A . n B 2 15 ALA 15 22 22 ALA ALA A . n B 2 16 GLU 16 23 23 GLU GLU A . n B 2 17 LEU 17 24 24 LEU LEU A . n B 2 18 ILE 18 25 25 ILE ILE A . n B 2 19 ALA 19 26 26 ALA ALA A . n B 2 20 GLU 20 27 27 GLU GLU A . n B 2 21 ARG 21 28 28 ARG ARG A . n B 2 22 ARG 22 29 29 ARG ARG A . n # _exptl.entry_id 1NYB _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1NYB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1NYB _struct.title 'SOLUTION STRUCTURE OF THE BACTERIOPHAGE PHI21 N PEPTIDE-BOXB RNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1NYB _struct_keywords.pdbx_keywords TRANSCRIPTION/RNA _struct_keywords.text 'peptide-rna complex, transcription antitermination, TRANSCRIPTION-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP REGN_BPPH3 P07243 2 ESKGTAKSRYKARRAELIAERR 8 ? 2 PDB 1NYB 1NYB 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1NYB A 1 ? 22 ? P07243 8 ? 29 ? 8 29 2 2 1NYB B 1 ? 24 ? 1NYB 1 ? 24 ? 1 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id B _struct_conf.beg_label_seq_id 5 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id B _struct_conf.end_label_seq_id 19 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 12 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 26 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 24 N3 ? ? B G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 24 O2 ? ? B G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 24 N4 ? ? B G 1 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 23 N3 ? ? B G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 23 O2 ? ? B G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 23 N4 ? ? B G 2 B C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A G 22 O6 ? ? B U 3 B G 22 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 22 N1 ? ? B U 3 B G 22 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 21 N1 ? ? B U 4 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 21 N6 ? ? B U 4 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 20 N1 ? ? B C 5 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 20 O6 ? ? B C 5 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 20 N2 ? ? B C 5 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 19 N3 ? ? B A 6 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 19 O4 ? ? B A 6 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 18 N1 ? ? B C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 18 O6 ? ? B C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 18 N2 ? ? B C 7 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 17 N1 ? ? B C 8 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 17 O6 ? ? B C 8 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 17 N2 ? ? B C 8 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 N3 ? ? ? 1_555 A G 16 O6 ? ? B U 9 B G 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 16 N1 ? ? B U 9 B G 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 A C 15 N4 ? ? B C 10 B C 15 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 6 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 C _pdbx_validate_close_contact.auth_seq_id_1 10 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 HH _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 17 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 113.06 108.50 4.56 0.70 N 2 1 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 116.92 121.90 -4.98 0.70 N 3 1 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.79 117.00 -3.21 0.50 N 4 1 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.12 117.70 3.42 0.50 N 5 1 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.22 118.60 -5.38 0.60 N 6 1 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.65 121.90 -5.25 0.70 N 7 1 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.85 121.90 -5.05 0.70 N 8 1 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.45 121.90 -4.45 0.70 N 9 1 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.94 117.00 -3.06 0.50 N 10 1 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.30 117.70 3.60 0.50 N 11 1 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.35 118.60 -5.25 0.60 N 12 1 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 114.00 117.00 -3.00 0.50 N 13 1 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.26 117.70 3.56 0.50 N 14 1 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.53 118.60 -5.07 0.60 N 15 1 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.49 121.90 -4.41 0.70 N 16 1 "O4'" B U 19 ? ? "C1'" B U 19 ? ? N1 B U 19 ? ? 113.08 108.50 4.58 0.70 N 17 1 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 113.93 117.00 -3.07 0.50 N 18 1 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.10 117.70 3.40 0.50 N 19 1 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 113.36 118.60 -5.24 0.60 N 20 1 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.39 121.90 -4.51 0.70 N 21 1 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 116.93 121.90 -4.97 0.70 N 22 1 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.56 120.30 3.26 0.50 N 23 1 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 124.28 120.30 3.98 0.50 N 24 2 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 117.03 121.90 -4.87 0.70 N 25 2 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.63 117.00 -3.37 0.50 N 26 2 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.24 117.70 3.54 0.50 N 27 2 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.54 118.60 -5.06 0.60 N 28 2 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.76 121.90 -5.14 0.70 N 29 2 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.82 121.90 -5.08 0.70 N 30 2 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.07 121.90 -4.83 0.70 N 31 2 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.88 117.00 -3.12 0.50 N 32 2 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.38 117.70 3.68 0.50 N 33 2 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.12 118.60 -5.48 0.60 N 34 2 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.77 117.00 -3.23 0.50 N 35 2 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.30 117.70 3.60 0.50 N 36 2 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.35 118.60 -5.25 0.60 N 37 2 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.59 121.90 -4.31 0.70 N 38 2 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 117.60 121.90 -4.30 0.70 N 39 2 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 113.95 117.00 -3.05 0.50 N 40 2 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.19 117.70 3.49 0.50 N 41 2 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 114.18 118.60 -4.42 0.60 N 42 2 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.13 121.90 -4.77 0.70 N 43 2 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.03 121.90 -4.87 0.70 N 44 2 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 124.37 120.30 4.07 0.50 N 45 3 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 117.00 121.90 -4.90 0.70 N 46 3 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.66 117.00 -3.34 0.50 N 47 3 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.12 117.70 3.42 0.50 N 48 3 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.75 118.60 -4.85 0.60 N 49 3 N1 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 122.51 118.90 3.61 0.60 N 50 3 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.51 121.90 -5.39 0.70 N 51 3 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.95 121.90 -4.95 0.70 N 52 3 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.98 117.00 -3.02 0.50 N 53 3 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.35 117.70 3.65 0.50 N 54 3 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.09 118.60 -5.51 0.60 N 55 3 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.80 117.00 -3.20 0.50 N 56 3 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.36 117.70 3.66 0.50 N 57 3 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.24 118.60 -5.36 0.60 N 58 3 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.59 121.90 -4.31 0.70 N 59 3 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.12 117.70 3.42 0.50 N 60 3 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 114.26 118.60 -4.34 0.60 N 61 3 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.34 121.90 -4.56 0.70 N 62 3 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.04 121.90 -4.86 0.70 N 63 3 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.53 120.30 3.23 0.50 N 64 3 NE A ARG 20 ? ? CZ A ARG 20 ? ? NH1 A ARG 20 ? ? 123.64 120.30 3.34 0.50 N 65 3 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 123.77 120.30 3.47 0.50 N 66 4 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 117.06 121.90 -4.84 0.70 N 67 4 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.48 117.70 3.78 0.50 N 68 4 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 114.56 118.60 -4.04 0.60 N 69 4 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.69 121.90 -5.21 0.70 N 70 4 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.56 121.90 -5.34 0.70 N 71 4 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.97 117.00 -3.03 0.50 N 72 4 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.23 117.70 3.53 0.50 N 73 4 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.36 118.60 -5.24 0.60 N 74 4 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.80 117.00 -3.20 0.50 N 75 4 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.32 117.70 3.62 0.50 N 76 4 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.30 118.60 -5.30 0.60 N 77 4 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 117.69 121.90 -4.21 0.70 N 78 4 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 113.91 117.00 -3.09 0.50 N 79 4 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.22 117.70 3.52 0.50 N 80 4 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 113.82 118.60 -4.78 0.60 N 81 4 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.14 121.90 -4.76 0.70 N 82 4 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.25 121.90 -4.65 0.70 N 83 4 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.48 120.30 3.18 0.50 N 84 4 NE A ARG 20 ? ? CZ A ARG 20 ? ? NH1 A ARG 20 ? ? 123.33 120.30 3.03 0.50 N 85 5 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 116.85 121.90 -5.05 0.70 N 86 5 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.87 117.00 -3.13 0.50 N 87 5 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.21 117.70 3.51 0.50 N 88 5 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.58 118.60 -5.02 0.60 N 89 5 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 117.02 121.90 -4.88 0.70 N 90 5 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.85 121.90 -5.05 0.70 N 91 5 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.95 117.00 -3.05 0.50 N 92 5 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.33 117.70 3.63 0.50 N 93 5 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.25 118.60 -5.35 0.60 N 94 5 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.87 117.00 -3.13 0.50 N 95 5 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.29 117.70 3.59 0.50 N 96 5 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.33 118.60 -5.27 0.60 N 97 5 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.57 121.90 -4.33 0.70 N 98 5 "O4'" B U 19 ? ? "C1'" B U 19 ? ? N1 B U 19 ? ? 114.84 108.50 6.34 0.70 N 99 5 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.23 117.70 3.53 0.50 N 100 5 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 114.45 118.60 -4.15 0.60 N 101 5 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.16 121.90 -4.74 0.70 N 102 5 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.13 121.90 -4.77 0.70 N 103 5 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.33 120.30 3.03 0.50 N 104 5 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 123.95 120.30 3.65 0.50 N 105 6 N3 B G 1 ? ? C4 B G 1 ? ? C5 B G 1 ? ? 125.27 128.60 -3.33 0.50 N 106 6 C8 B G 1 ? ? N9 B G 1 ? ? C4 B G 1 ? ? 103.99 106.40 -2.41 0.40 N 107 6 N9 B G 2 ? ? "C1'" B G 2 ? ? "C2'" B G 2 ? ? 123.19 114.00 9.19 1.30 N 108 6 "O4'" B G 2 ? ? "C1'" B G 2 ? ? N9 B G 2 ? ? 114.70 108.50 6.20 0.70 N 109 6 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 112.71 108.50 4.21 0.70 N 110 6 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 117.21 121.90 -4.69 0.70 N 111 6 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.93 117.00 -3.07 0.50 N 112 6 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.16 117.70 3.46 0.50 N 113 6 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.91 118.60 -4.69 0.60 N 114 6 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.92 121.90 -4.98 0.70 N 115 6 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.85 121.90 -5.05 0.70 N 116 6 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.50 121.90 -4.40 0.70 N 117 6 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.94 117.00 -3.06 0.50 N 118 6 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.37 117.70 3.67 0.50 N 119 6 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.15 118.60 -5.45 0.60 N 120 6 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.91 117.00 -3.09 0.50 N 121 6 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.25 117.70 3.55 0.50 N 122 6 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.36 118.60 -5.24 0.60 N 123 6 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.50 121.90 -4.40 0.70 N 124 6 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 114.00 117.00 -3.00 0.50 N 125 6 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.16 117.70 3.46 0.50 N 126 6 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 113.84 118.60 -4.76 0.60 N 127 6 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.13 121.90 -4.77 0.70 N 128 6 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.12 121.90 -4.78 0.70 N 129 6 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 124.57 120.30 4.27 0.50 N 130 6 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 125.16 120.30 4.86 0.50 N 131 7 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 116.90 121.90 -5.00 0.70 N 132 7 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.74 117.00 -3.26 0.50 N 133 7 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.24 117.70 3.54 0.50 N 134 7 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.73 118.60 -4.87 0.60 N 135 7 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.68 121.90 -5.22 0.70 N 136 7 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 117.08 121.90 -4.82 0.70 N 137 7 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.48 121.90 -4.42 0.70 N 138 7 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.96 117.00 -3.04 0.50 N 139 7 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.21 117.70 3.51 0.50 N 140 7 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.22 118.60 -5.38 0.60 N 141 7 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.86 117.00 -3.14 0.50 N 142 7 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.33 117.70 3.63 0.50 N 143 7 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.30 118.60 -5.30 0.60 N 144 7 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.55 121.90 -4.35 0.70 N 145 7 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.14 117.70 3.44 0.50 N 146 7 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 114.33 118.60 -4.27 0.60 N 147 7 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.31 121.90 -4.59 0.70 N 148 7 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.02 121.90 -4.88 0.70 N 149 7 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.32 120.30 3.02 0.50 N 150 7 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 124.55 120.30 4.25 0.50 N 151 8 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 116.71 121.90 -5.19 0.70 N 152 8 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.77 117.00 -3.23 0.50 N 153 8 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 120.95 117.70 3.25 0.50 N 154 8 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.78 118.60 -4.82 0.60 N 155 8 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.84 121.90 -5.06 0.70 N 156 8 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 117.16 121.90 -4.74 0.70 N 157 8 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.62 121.90 -4.28 0.70 N 158 8 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.98 117.00 -3.02 0.50 N 159 8 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.25 117.70 3.55 0.50 N 160 8 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.19 118.60 -5.41 0.60 N 161 8 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.84 117.00 -3.16 0.50 N 162 8 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.24 117.70 3.54 0.50 N 163 8 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.44 118.60 -5.16 0.60 N 164 8 C5 B U 19 ? ? C6 B U 19 ? ? N1 B U 19 ? ? 119.65 122.70 -3.05 0.50 N 165 8 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 113.99 117.00 -3.01 0.50 N 166 8 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.09 117.70 3.39 0.50 N 167 8 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 113.97 118.60 -4.63 0.60 N 168 8 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.25 121.90 -4.65 0.70 N 169 8 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.03 121.90 -4.87 0.70 N 170 8 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.36 120.30 3.06 0.50 N 171 8 NE A ARG 20 ? ? CZ A ARG 20 ? ? NH1 A ARG 20 ? ? 123.52 120.30 3.22 0.50 N 172 9 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 116.82 121.90 -5.08 0.70 N 173 9 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.21 117.70 3.51 0.50 N 174 9 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.89 118.60 -4.71 0.60 N 175 9 "O4'" B C 7 ? ? "C1'" B C 7 ? ? N1 B C 7 ? ? 112.94 108.50 4.44 0.70 N 176 9 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.99 121.90 -4.91 0.70 N 177 9 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.75 121.90 -5.15 0.70 N 178 9 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.95 117.00 -3.05 0.50 N 179 9 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.41 117.70 3.71 0.50 N 180 9 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.10 118.60 -5.50 0.60 N 181 9 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.89 117.00 -3.11 0.50 N 182 9 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.27 117.70 3.57 0.50 N 183 9 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.42 118.60 -5.18 0.60 N 184 9 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.49 121.90 -4.41 0.70 N 185 9 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 115.84 108.50 7.34 0.70 N 186 9 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.34 117.70 3.64 0.50 N 187 9 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 114.26 118.60 -4.34 0.60 N 188 9 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.20 121.90 -4.70 0.70 N 189 9 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 116.96 121.90 -4.94 0.70 N 190 9 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 125.05 120.30 4.75 0.50 N 191 9 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 125.18 120.30 4.88 0.50 N 192 9 NE A ARG 28 ? ? CZ A ARG 28 ? ? NH1 A ARG 28 ? ? 124.09 120.30 3.79 0.50 N 193 10 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 117.09 121.90 -4.81 0.70 N 194 10 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.81 117.00 -3.19 0.50 N 195 10 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 120.99 117.70 3.29 0.50 N 196 10 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.73 118.60 -4.87 0.60 N 197 10 N1 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 122.63 118.90 3.73 0.60 N 198 10 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.39 121.90 -5.51 0.70 N 199 10 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.80 121.90 -5.10 0.70 N 200 10 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.66 121.90 -4.24 0.70 N 201 10 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.92 117.00 -3.08 0.50 N 202 10 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.35 117.70 3.65 0.50 N 203 10 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.06 118.60 -5.54 0.60 N 204 10 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.92 117.00 -3.08 0.50 N 205 10 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.27 117.70 3.57 0.50 N 206 10 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.35 118.60 -5.25 0.60 N 207 10 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.51 121.90 -4.39 0.70 N 208 10 N3 B C 15 ? ? C2 B C 15 ? ? O2 B C 15 ? ? 117.58 121.90 -4.32 0.70 N 209 10 "O4'" B U 19 ? ? "C1'" B U 19 ? ? N1 B U 19 ? ? 114.29 108.50 5.79 0.70 N 210 10 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 113.68 117.00 -3.32 0.50 N 211 10 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 120.96 117.70 3.26 0.50 N 212 10 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 113.04 118.60 -5.56 0.60 N 213 10 N1 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 122.52 118.90 3.62 0.60 N 214 10 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 116.91 121.90 -4.99 0.70 N 215 10 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.27 121.90 -4.63 0.70 N 216 10 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.80 120.30 3.50 0.50 N 217 10 NE A ARG 20 ? ? CZ A ARG 20 ? ? NH1 A ARG 20 ? ? 123.48 120.30 3.18 0.50 N 218 11 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 117.10 121.90 -4.80 0.70 N 219 11 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.76 117.00 -3.24 0.50 N 220 11 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.11 117.70 3.41 0.50 N 221 11 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.75 118.60 -4.85 0.60 N 222 11 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.86 121.90 -5.04 0.70 N 223 11 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.94 121.90 -4.96 0.70 N 224 11 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.23 117.70 3.53 0.50 N 225 11 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.27 118.60 -5.33 0.60 N 226 11 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.74 117.00 -3.26 0.50 N 227 11 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.21 117.70 3.51 0.50 N 228 11 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.45 118.60 -5.15 0.60 N 229 11 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.37 121.90 -4.53 0.70 N 230 11 "O4'" B U 19 ? ? "C1'" B U 19 ? ? N1 B U 19 ? ? 113.03 108.50 4.53 0.70 N 231 11 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.40 117.70 3.70 0.50 N 232 11 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 114.18 118.60 -4.42 0.60 N 233 11 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.24 121.90 -4.66 0.70 N 234 11 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.17 121.90 -4.73 0.70 N 235 11 NE A ARG 20 ? ? CZ A ARG 20 ? ? NH1 A ARG 20 ? ? 123.55 120.30 3.25 0.50 N 236 11 NE A ARG 28 ? ? CZ A ARG 28 ? ? NH1 A ARG 28 ? ? 124.29 120.30 3.99 0.50 N 237 12 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 117.20 121.90 -4.70 0.70 N 238 12 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.92 117.00 -3.08 0.50 N 239 12 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.07 117.70 3.37 0.50 N 240 12 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 114.11 118.60 -4.49 0.60 N 241 12 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.99 121.90 -4.91 0.70 N 242 12 N1 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 122.89 118.90 3.99 0.60 N 243 12 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.15 121.90 -5.75 0.70 N 244 12 N1 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 123.29 118.90 4.39 0.60 N 245 12 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 116.65 121.90 -5.25 0.70 N 246 12 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.96 117.00 -3.04 0.50 N 247 12 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.33 117.70 3.63 0.50 N 248 12 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.19 118.60 -5.41 0.60 N 249 12 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.86 117.00 -3.14 0.50 N 250 12 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.31 117.70 3.61 0.50 N 251 12 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.27 118.60 -5.33 0.60 N 252 12 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.67 121.90 -4.23 0.70 N 253 12 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 113.91 117.00 -3.09 0.50 N 254 12 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.05 117.70 3.35 0.50 N 255 12 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 113.90 118.60 -4.70 0.60 N 256 12 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.29 121.90 -4.61 0.70 N 257 12 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.09 121.90 -4.81 0.70 N 258 13 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 112.71 108.50 4.21 0.70 N 259 13 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 117.22 121.90 -4.68 0.70 N 260 13 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.77 117.00 -3.23 0.50 N 261 13 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.04 117.70 3.34 0.50 N 262 13 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.65 118.60 -4.95 0.60 N 263 13 N1 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 122.53 118.90 3.63 0.60 N 264 13 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.66 121.90 -5.24 0.70 N 265 13 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 117.24 121.90 -4.66 0.70 N 266 13 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.86 117.00 -3.14 0.50 N 267 13 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.37 117.70 3.67 0.50 N 268 13 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.15 118.60 -5.45 0.60 N 269 13 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.90 117.00 -3.10 0.50 N 270 13 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.22 117.70 3.52 0.50 N 271 13 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.36 118.60 -5.24 0.60 N 272 13 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.84 108.50 4.34 0.70 N 273 13 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 113.97 117.00 -3.03 0.50 N 274 13 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.26 117.70 3.56 0.50 N 275 13 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 113.98 118.60 -4.62 0.60 N 276 13 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.21 121.90 -4.69 0.70 N 277 13 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.12 121.90 -4.78 0.70 N 278 14 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 116.54 121.90 -5.36 0.70 N 279 14 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.76 117.00 -3.24 0.50 N 280 14 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.16 117.70 3.46 0.50 N 281 14 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 113.44 118.60 -5.16 0.60 N 282 14 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 117.28 121.90 -4.62 0.70 N 283 14 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.89 121.90 -5.01 0.70 N 284 14 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.32 121.90 -4.58 0.70 N 285 14 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.95 117.00 -3.05 0.50 N 286 14 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.36 117.70 3.66 0.50 N 287 14 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.19 118.60 -5.41 0.60 N 288 14 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.85 117.00 -3.15 0.50 N 289 14 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.25 117.70 3.55 0.50 N 290 14 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.30 118.60 -5.30 0.60 N 291 14 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.47 121.90 -4.43 0.70 N 292 14 "O4'" B U 19 ? ? "C1'" B U 19 ? ? N1 B U 19 ? ? 114.10 108.50 5.60 0.70 N 293 14 C4 B A 21 ? ? C5 B A 21 ? ? C6 B A 21 ? ? 113.94 117.00 -3.06 0.50 N 294 14 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.18 117.70 3.48 0.50 N 295 14 N1 B A 21 ? ? C6 B A 21 ? ? N6 B A 21 ? ? 113.68 118.60 -4.92 0.60 N 296 14 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.15 121.90 -4.75 0.70 N 297 14 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.09 121.90 -4.81 0.70 N 298 14 NE A ARG 16 ? ? CZ A ARG 16 ? ? NH1 A ARG 16 ? ? 123.71 120.30 3.41 0.50 N 299 14 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 123.85 120.30 3.55 0.50 N 300 15 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 112.95 108.50 4.45 0.70 N 301 15 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 113.46 108.50 4.96 0.70 N 302 15 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.74 108.50 5.24 0.70 N 303 15 N3 B C 5 ? ? C2 B C 5 ? ? O2 B C 5 ? ? 116.86 121.90 -5.04 0.70 N 304 15 C4 B A 6 ? ? C5 B A 6 ? ? C6 B A 6 ? ? 113.91 117.00 -3.09 0.50 N 305 15 C5 B A 6 ? ? C6 B A 6 ? ? N1 B A 6 ? ? 121.37 117.70 3.67 0.50 N 306 15 N1 B A 6 ? ? C6 B A 6 ? ? N6 B A 6 ? ? 114.11 118.60 -4.49 0.60 N 307 15 N3 B C 7 ? ? C2 B C 7 ? ? O2 B C 7 ? ? 116.88 121.90 -5.02 0.70 N 308 15 N1 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 122.50 118.90 3.60 0.60 N 309 15 N3 B C 8 ? ? C2 B C 8 ? ? O2 B C 8 ? ? 116.50 121.90 -5.40 0.70 N 310 15 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 117.62 121.90 -4.28 0.70 N 311 15 C4 B A 12 ? ? C5 B A 12 ? ? C6 B A 12 ? ? 113.98 117.00 -3.02 0.50 N 312 15 C5 B A 12 ? ? C6 B A 12 ? ? N1 B A 12 ? ? 121.33 117.70 3.63 0.50 N 313 15 N1 B A 12 ? ? C6 B A 12 ? ? N6 B A 12 ? ? 113.14 118.60 -5.46 0.60 N 314 15 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.89 117.00 -3.11 0.50 N 315 15 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.33 117.70 3.63 0.50 N 316 15 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.31 118.60 -5.29 0.60 N 317 15 C5 B A 21 ? ? C6 B A 21 ? ? N1 B A 21 ? ? 121.07 117.70 3.37 0.50 N 318 15 "O4'" B G 22 ? ? "C1'" B G 22 ? ? N9 B G 22 ? ? 113.62 108.50 5.12 0.70 N 319 15 N3 B C 23 ? ? C2 B C 23 ? ? O2 B C 23 ? ? 117.14 121.90 -4.76 0.70 N 320 15 N3 B C 24 ? ? C2 B C 24 ? ? O2 B C 24 ? ? 117.00 121.90 -4.90 0.70 N 321 15 NE A ARG 28 ? ? CZ A ARG 28 ? ? NH1 A ARG 28 ? ? 123.66 120.30 3.36 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 9 ? ? -68.58 15.30 2 1 ARG A 28 ? ? -32.94 -83.49 3 2 LYS A 10 ? ? -67.42 27.09 4 3 SER A 9 ? ? -79.46 46.28 5 4 LYS A 10 ? ? -92.40 -77.87 6 6 ARG A 28 ? ? 59.99 15.56 7 7 ARG A 28 ? ? 37.63 52.42 8 13 SER A 9 ? ? 65.00 -51.42 9 13 ARG A 28 ? ? 54.25 19.06 10 15 SER A 9 ? ? 64.62 -8.72 11 15 LYS A 10 ? ? 43.67 -107.28 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLU A 8 ? ? SER A 9 ? ? -136.83 2 1 ARG A 28 ? ? ARG A 29 ? ? 146.53 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C4'" ? B G 1 ? 'WRONG HAND' . 2 1 "C3'" ? B G 1 ? 'WRONG HAND' . 3 1 CA ? A SER 9 ? 'WRONG HAND' . 4 2 "C4'" ? B G 1 ? 'WRONG HAND' . 5 2 "C3'" ? B G 1 ? 'WRONG HAND' . 6 2 "C4'" ? B G 2 ? 'WRONG HAND' . 7 3 "C3'" ? B G 1 ? 'WRONG HAND' . 8 3 "C4'" ? B C 8 ? 'WRONG HAND' . 9 4 "C4'" ? B G 1 ? 'WRONG HAND' . 10 4 "C1'" ? B G 2 ? 'WRONG HAND' . 11 4 "C3'" ? B C 8 ? 'WRONG HAND' . 12 5 "C2'" ? B U 19 ? 'WRONG HAND' . 13 6 "C4'" ? B G 1 ? 'WRONG HAND' . 14 6 "C3'" ? B G 1 ? 'WRONG HAND' . 15 6 "C2'" ? B G 1 ? 'WRONG HAND' . 16 6 "C1'" ? B G 1 ? 'WRONG HAND' . 17 6 "C1'" ? B G 2 ? 'WRONG HAND' . 18 6 "C3'" ? B U 19 ? 'WRONG HAND' . 19 7 "C4'" ? B G 1 ? 'WRONG HAND' . 20 7 "C3'" ? B G 1 ? 'WRONG HAND' . 21 7 "C4'" ? B C 8 ? 'WRONG HAND' . 22 8 "C3'" ? B G 1 ? 'WRONG HAND' . 23 8 "C4'" ? B U 19 ? 'WRONG HAND' . 24 8 "C3'" ? B U 19 ? 'WRONG HAND' . 25 8 "C1'" ? B U 19 ? 'WRONG HAND' . 26 9 "C4'" ? B G 1 ? 'WRONG HAND' . 27 9 "C3'" ? B G 1 ? 'WRONG HAND' . 28 9 "C1'" ? B G 1 ? 'WRONG HAND' . 29 9 "C4'" ? B C 8 ? 'WRONG HAND' . 30 9 "C2'" ? B G 17 ? 'WRONG HAND' . 31 9 "C4'" ? B U 19 ? 'WRONG HAND' . 32 9 "C2'" ? B U 19 ? 'WRONG HAND' . 33 10 "C4'" ? B G 1 ? 'WRONG HAND' . 34 10 "C3'" ? B G 1 ? 'WRONG HAND' . 35 10 "C3'" ? B G 2 ? 'WRONG HAND' . 36 10 "C1'" ? B G 2 ? 'WRONG HAND' . 37 10 "C2'" ? B U 19 ? 'WRONG HAND' . 38 11 "C4'" ? B U 11 ? 'WRONG HAND' . 39 11 "C3'" ? B U 11 ? 'WRONG HAND' . 40 11 "C1'" ? B U 11 ? 'WRONG HAND' . 41 11 "C4'" ? B A 21 ? 'WRONG HAND' . 42 11 "C3'" ? B A 21 ? 'WRONG HAND' . 43 12 "C4'" ? B G 1 ? 'WRONG HAND' . 44 12 "C3'" ? B G 1 ? 'WRONG HAND' . 45 12 "C4'" ? B C 8 ? 'WRONG HAND' . 46 13 "C4'" ? B G 1 ? 'WRONG HAND' . 47 13 "C3'" ? B G 1 ? 'WRONG HAND' . 48 13 "C1'" ? B G 1 ? 'WRONG HAND' . 49 13 "C4'" ? B G 2 ? 'WRONG HAND' . 50 13 "C3'" ? B G 2 ? 'WRONG HAND' . 51 13 "C2'" ? B U 3 ? 'WRONG HAND' . 52 14 "C3'" ? B G 1 ? 'WRONG HAND' . 53 14 "C2'" ? B U 19 ? 'WRONG HAND' . 54 15 "C2'" ? B G 1 ? 'WRONG HAND' . 55 15 "C2'" ? B G 20 ? 'WRONG HAND' . 56 15 "C1'" ? B G 22 ? 'WRONG HAND' . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U B 4 ? ? 0.077 'SIDE CHAIN' 2 1 A B 6 ? ? 0.067 'SIDE CHAIN' 3 1 C B 8 ? ? 0.088 'SIDE CHAIN' 4 1 C B 10 ? ? 0.060 'SIDE CHAIN' 5 1 U B 11 ? ? 0.067 'SIDE CHAIN' 6 1 A B 12 ? ? 0.054 'SIDE CHAIN' 7 1 G B 22 ? ? 0.093 'SIDE CHAIN' 8 1 C B 23 ? ? 0.061 'SIDE CHAIN' 9 1 ARG A 28 ? ? 0.082 'SIDE CHAIN' 10 2 G B 1 ? ? 0.081 'SIDE CHAIN' 11 2 C B 8 ? ? 0.103 'SIDE CHAIN' 12 2 U B 9 ? ? 0.078 'SIDE CHAIN' 13 2 C B 10 ? ? 0.061 'SIDE CHAIN' 14 2 G B 22 ? ? 0.067 'SIDE CHAIN' 15 3 C B 8 ? ? 0.074 'SIDE CHAIN' 16 3 U B 11 ? ? 0.090 'SIDE CHAIN' 17 4 G B 2 ? ? 0.109 'SIDE CHAIN' 18 4 U B 3 ? ? 0.081 'SIDE CHAIN' 19 4 C B 8 ? ? 0.101 'SIDE CHAIN' 20 4 U B 11 ? ? 0.124 'SIDE CHAIN' 21 4 G B 18 ? ? 0.050 'SIDE CHAIN' 22 5 C B 5 ? ? 0.062 'SIDE CHAIN' 23 5 U B 11 ? ? 0.077 'SIDE CHAIN' 24 5 A B 12 ? ? 0.055 'SIDE CHAIN' 25 5 G B 18 ? ? 0.060 'SIDE CHAIN' 26 5 U B 19 ? ? 0.074 'SIDE CHAIN' 27 5 G B 20 ? ? 0.068 'SIDE CHAIN' 28 5 G B 22 ? ? 0.066 'SIDE CHAIN' 29 6 G B 1 ? ? 0.111 'SIDE CHAIN' 30 6 G B 2 ? ? 0.072 'SIDE CHAIN' 31 6 C B 8 ? ? 0.117 'SIDE CHAIN' 32 6 C B 10 ? ? 0.093 'SIDE CHAIN' 33 6 U B 11 ? ? 0.085 'SIDE CHAIN' 34 6 G B 17 ? ? 0.068 'SIDE CHAIN' 35 6 TYR A 17 ? ? 0.070 'SIDE CHAIN' 36 7 C B 8 ? ? 0.131 'SIDE CHAIN' 37 7 C B 10 ? ? 0.073 'SIDE CHAIN' 38 7 U B 11 ? ? 0.121 'SIDE CHAIN' 39 7 A B 21 ? ? 0.065 'SIDE CHAIN' 40 8 C B 5 ? ? 0.065 'SIDE CHAIN' 41 8 U B 19 ? ? 0.115 'SIDE CHAIN' 42 8 G B 20 ? ? 0.090 'SIDE CHAIN' 43 8 G B 22 ? ? 0.060 'SIDE CHAIN' 44 9 G B 1 ? ? 0.067 'SIDE CHAIN' 45 9 G B 2 ? ? 0.053 'SIDE CHAIN' 46 9 C B 8 ? ? 0.082 'SIDE CHAIN' 47 9 U B 11 ? ? 0.090 'SIDE CHAIN' 48 9 C B 15 ? ? 0.094 'SIDE CHAIN' 49 9 U B 19 ? ? 0.092 'SIDE CHAIN' 50 9 G B 22 ? ? 0.069 'SIDE CHAIN' 51 10 G B 1 ? ? 0.055 'SIDE CHAIN' 52 10 G B 2 ? ? 0.145 'SIDE CHAIN' 53 10 U B 3 ? ? 0.105 'SIDE CHAIN' 54 10 A B 6 ? ? 0.074 'SIDE CHAIN' 55 10 U B 11 ? ? 0.070 'SIDE CHAIN' 56 10 G B 18 ? ? 0.072 'SIDE CHAIN' 57 10 U B 19 ? ? 0.107 'SIDE CHAIN' 58 10 G B 22 ? ? 0.052 'SIDE CHAIN' 59 11 C B 8 ? ? 0.079 'SIDE CHAIN' 60 11 C B 10 ? ? 0.068 'SIDE CHAIN' 61 11 U B 11 ? ? 0.119 'SIDE CHAIN' 62 11 G B 20 ? ? 0.058 'SIDE CHAIN' 63 12 C B 8 ? ? 0.149 'SIDE CHAIN' 64 12 U B 11 ? ? 0.072 'SIDE CHAIN' 65 13 G B 1 ? ? 0.076 'SIDE CHAIN' 66 13 G B 2 ? ? 0.054 'SIDE CHAIN' 67 13 U B 3 ? ? 0.076 'SIDE CHAIN' 68 13 U B 4 ? ? 0.060 'SIDE CHAIN' 69 13 U B 11 ? ? 0.082 'SIDE CHAIN' 70 14 C B 10 ? ? 0.104 'SIDE CHAIN' 71 14 A B 12 ? ? 0.056 'SIDE CHAIN' 72 15 G B 2 ? ? 0.096 'SIDE CHAIN' 73 15 C B 8 ? ? 0.152 'SIDE CHAIN' 74 15 C B 10 ? ? 0.095 'SIDE CHAIN' 75 15 U B 11 ? ? 0.071 'SIDE CHAIN' 76 15 A B 21 ? ? 0.076 'SIDE CHAIN' 77 15 G B 22 ? ? 0.076 'SIDE CHAIN' 78 15 C B 23 ? ? 0.090 'SIDE CHAIN' 79 15 C B 24 ? ? 0.064 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1NYB _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1NYB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2mM N peptide-boxB RNA complex; 25mM D6(98%)-succinate, 2mM NaCl, 0.2mM EDTA, 0.05mM Na-azide' _pdbx_nmr_sample_details.solvent_system '90% H20, 10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '2mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_details.entry_id 1NYB _pdbx_nmr_details.text ;The structure was determined using 2D homonuclear and 3D heteronuclear NMR spectroscopy. The two most important samples were uniformly labeled 15N,13C peptide or RNA in complex with its unlabeled counterpart. ; # _pdbx_nmr_refine.entry_id 1NYB _pdbx_nmr_refine.method ? _pdbx_nmr_refine.details ;There were a total of 1016 distance restraints (including 48 hydrogen bond distance restraints) and 167 torsion restraints used to determine this structure. The molecular modeling of the phi21 N peptide-boxB RNA complex was done in three steps. First, a complete intramolecular restraint set was generated for each molecule, and then peptide and RNA structures were generated separately using ab initio simulated annealing (SA) starting from a random extended structure in CNSsolve. For both the peptide and the RNA, constrained (torsion) dynamics was used at 50000K. A total of 100 structures each of the peptide and RNA were generated. In the second step, each of the 20 lowest energy peptide and 20 lowest energy RNA structures were combined in single PDB files, in all 400 possible combinations. The RNA was held at the origin and the peptide was randomly rotated and moved 100 angstroms away in a random direction from the origin. These 400 possible "complexes" were docked using CNSsolve. The objective of the docking was to bring the peptide and RNA together without dramatically perturbing their folded structures from the first round of SA, so the temperatures for the docking were set much lower than in the initial calculations (1000 vs. 50000K). Finally, the 100 lowest energy docked structures were minimized by two rounds of low temperature annealing using Sander, a module of AMBER. As with the docking, the temperature was kept low (1000K). The 14 lowest energy structures were used for generating an average structure, which was energy minimized using a conjugate gradient. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe 2.1 processing 'F. Delaglio, S. Grzesiek, G. Vuister, G. Zhu, J. Pfeifer, and A. Bax' 1 NMRView 4.1.3 'data analysis' 'Bruce A. Johnson' 2 CNS 1.0 refinement ;A.T. Brunger, P.D. Adams, G.M. Clore, W.L. Delano, P. Gros, R.W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, N.S. Pannu, R.J. Read, L.M. Rice, T. Simonson, G.L. Warren ; 3 Amber 6 'structure solution' 'Case, D.A., Kollman, P.' 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 C OP3 O N N 78 C P P N N 79 C OP1 O N N 80 C OP2 O N N 81 C "O5'" O N N 82 C "C5'" C N N 83 C "C4'" C N R 84 C "O4'" O N N 85 C "C3'" C N S 86 C "O3'" O N N 87 C "C2'" C N R 88 C "O2'" O N N 89 C "C1'" C N R 90 C N1 N N N 91 C C2 C N N 92 C O2 O N N 93 C N3 N N N 94 C C4 C N N 95 C N4 N N N 96 C C5 C N N 97 C C6 C N N 98 C HOP3 H N N 99 C HOP2 H N N 100 C "H5'" H N N 101 C "H5''" H N N 102 C "H4'" H N N 103 C "H3'" H N N 104 C "HO3'" H N N 105 C "H2'" H N N 106 C "HO2'" H N N 107 C "H1'" H N N 108 C H41 H N N 109 C H42 H N N 110 C H5 H N N 111 C H6 H N N 112 G OP3 O N N 113 G P P N N 114 G OP1 O N N 115 G OP2 O N N 116 G "O5'" O N N 117 G "C5'" C N N 118 G "C4'" C N R 119 G "O4'" O N N 120 G "C3'" C N S 121 G "O3'" O N N 122 G "C2'" C N R 123 G "O2'" O N N 124 G "C1'" C N R 125 G N9 N Y N 126 G C8 C Y N 127 G N7 N Y N 128 G C5 C Y N 129 G C6 C N N 130 G O6 O N N 131 G N1 N N N 132 G C2 C N N 133 G N2 N N N 134 G N3 N N N 135 G C4 C Y N 136 G HOP3 H N N 137 G HOP2 H N N 138 G "H5'" H N N 139 G "H5''" H N N 140 G "H4'" H N N 141 G "H3'" H N N 142 G "HO3'" H N N 143 G "H2'" H N N 144 G "HO2'" H N N 145 G "H1'" H N N 146 G H8 H N N 147 G H1 H N N 148 G H21 H N N 149 G H22 H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 ILE N N N N 180 ILE CA C N S 181 ILE C C N N 182 ILE O O N N 183 ILE CB C N S 184 ILE CG1 C N N 185 ILE CG2 C N N 186 ILE CD1 C N N 187 ILE OXT O N N 188 ILE H H N N 189 ILE H2 H N N 190 ILE HA H N N 191 ILE HB H N N 192 ILE HG12 H N N 193 ILE HG13 H N N 194 ILE HG21 H N N 195 ILE HG22 H N N 196 ILE HG23 H N N 197 ILE HD11 H N N 198 ILE HD12 H N N 199 ILE HD13 H N N 200 ILE HXT H N N 201 LEU N N N N 202 LEU CA C N S 203 LEU C C N N 204 LEU O O N N 205 LEU CB C N N 206 LEU CG C N N 207 LEU CD1 C N N 208 LEU CD2 C N N 209 LEU OXT O N N 210 LEU H H N N 211 LEU H2 H N N 212 LEU HA H N N 213 LEU HB2 H N N 214 LEU HB3 H N N 215 LEU HG H N N 216 LEU HD11 H N N 217 LEU HD12 H N N 218 LEU HD13 H N N 219 LEU HD21 H N N 220 LEU HD22 H N N 221 LEU HD23 H N N 222 LEU HXT H N N 223 LYS N N N N 224 LYS CA C N S 225 LYS C C N N 226 LYS O O N N 227 LYS CB C N N 228 LYS CG C N N 229 LYS CD C N N 230 LYS CE C N N 231 LYS NZ N N N 232 LYS OXT O N N 233 LYS H H N N 234 LYS H2 H N N 235 LYS HA H N N 236 LYS HB2 H N N 237 LYS HB3 H N N 238 LYS HG2 H N N 239 LYS HG3 H N N 240 LYS HD2 H N N 241 LYS HD3 H N N 242 LYS HE2 H N N 243 LYS HE3 H N N 244 LYS HZ1 H N N 245 LYS HZ2 H N N 246 LYS HZ3 H N N 247 LYS HXT H N N 248 SER N N N N 249 SER CA C N S 250 SER C C N N 251 SER O O N N 252 SER CB C N N 253 SER OG O N N 254 SER OXT O N N 255 SER H H N N 256 SER H2 H N N 257 SER HA H N N 258 SER HB2 H N N 259 SER HB3 H N N 260 SER HG H N N 261 SER HXT H N N 262 THR N N N N 263 THR CA C N S 264 THR C C N N 265 THR O O N N 266 THR CB C N R 267 THR OG1 O N N 268 THR CG2 C N N 269 THR OXT O N N 270 THR H H N N 271 THR H2 H N N 272 THR HA H N N 273 THR HB H N N 274 THR HG1 H N N 275 THR HG21 H N N 276 THR HG22 H N N 277 THR HG23 H N N 278 THR HXT H N N 279 TYR N N N N 280 TYR CA C N S 281 TYR C C N N 282 TYR O O N N 283 TYR CB C N N 284 TYR CG C Y N 285 TYR CD1 C Y N 286 TYR CD2 C Y N 287 TYR CE1 C Y N 288 TYR CE2 C Y N 289 TYR CZ C Y N 290 TYR OH O N N 291 TYR OXT O N N 292 TYR H H N N 293 TYR H2 H N N 294 TYR HA H N N 295 TYR HB2 H N N 296 TYR HB3 H N N 297 TYR HD1 H N N 298 TYR HD2 H N N 299 TYR HE1 H N N 300 TYR HE2 H N N 301 TYR HH H N N 302 TYR HXT H N N 303 U OP3 O N N 304 U P P N N 305 U OP1 O N N 306 U OP2 O N N 307 U "O5'" O N N 308 U "C5'" C N N 309 U "C4'" C N R 310 U "O4'" O N N 311 U "C3'" C N S 312 U "O3'" O N N 313 U "C2'" C N R 314 U "O2'" O N N 315 U "C1'" C N R 316 U N1 N N N 317 U C2 C N N 318 U O2 O N N 319 U N3 N N N 320 U C4 C N N 321 U O4 O N N 322 U C5 C N N 323 U C6 C N N 324 U HOP3 H N N 325 U HOP2 H N N 326 U "H5'" H N N 327 U "H5''" H N N 328 U "H4'" H N N 329 U "H3'" H N N 330 U "HO3'" H N N 331 U "H2'" H N N 332 U "HO2'" H N N 333 U "H1'" H N N 334 U H3 H N N 335 U H5 H N N 336 U H6 H N N 337 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 C OP3 P sing N N 78 C OP3 HOP3 sing N N 79 C P OP1 doub N N 80 C P OP2 sing N N 81 C P "O5'" sing N N 82 C OP2 HOP2 sing N N 83 C "O5'" "C5'" sing N N 84 C "C5'" "C4'" sing N N 85 C "C5'" "H5'" sing N N 86 C "C5'" "H5''" sing N N 87 C "C4'" "O4'" sing N N 88 C "C4'" "C3'" sing N N 89 C "C4'" "H4'" sing N N 90 C "O4'" "C1'" sing N N 91 C "C3'" "O3'" sing N N 92 C "C3'" "C2'" sing N N 93 C "C3'" "H3'" sing N N 94 C "O3'" "HO3'" sing N N 95 C "C2'" "O2'" sing N N 96 C "C2'" "C1'" sing N N 97 C "C2'" "H2'" sing N N 98 C "O2'" "HO2'" sing N N 99 C "C1'" N1 sing N N 100 C "C1'" "H1'" sing N N 101 C N1 C2 sing N N 102 C N1 C6 sing N N 103 C C2 O2 doub N N 104 C C2 N3 sing N N 105 C N3 C4 doub N N 106 C C4 N4 sing N N 107 C C4 C5 sing N N 108 C N4 H41 sing N N 109 C N4 H42 sing N N 110 C C5 C6 doub N N 111 C C5 H5 sing N N 112 C C6 H6 sing N N 113 G OP3 P sing N N 114 G OP3 HOP3 sing N N 115 G P OP1 doub N N 116 G P OP2 sing N N 117 G P "O5'" sing N N 118 G OP2 HOP2 sing N N 119 G "O5'" "C5'" sing N N 120 G "C5'" "C4'" sing N N 121 G "C5'" "H5'" sing N N 122 G "C5'" "H5''" sing N N 123 G "C4'" "O4'" sing N N 124 G "C4'" "C3'" sing N N 125 G "C4'" "H4'" sing N N 126 G "O4'" "C1'" sing N N 127 G "C3'" "O3'" sing N N 128 G "C3'" "C2'" sing N N 129 G "C3'" "H3'" sing N N 130 G "O3'" "HO3'" sing N N 131 G "C2'" "O2'" sing N N 132 G "C2'" "C1'" sing N N 133 G "C2'" "H2'" sing N N 134 G "O2'" "HO2'" sing N N 135 G "C1'" N9 sing N N 136 G "C1'" "H1'" sing N N 137 G N9 C8 sing Y N 138 G N9 C4 sing Y N 139 G C8 N7 doub Y N 140 G C8 H8 sing N N 141 G N7 C5 sing Y N 142 G C5 C6 sing N N 143 G C5 C4 doub Y N 144 G C6 O6 doub N N 145 G C6 N1 sing N N 146 G N1 C2 sing N N 147 G N1 H1 sing N N 148 G C2 N2 sing N N 149 G C2 N3 doub N N 150 G N2 H21 sing N N 151 G N2 H22 sing N N 152 G N3 C4 sing N N 153 GLU N CA sing N N 154 GLU N H sing N N 155 GLU N H2 sing N N 156 GLU CA C sing N N 157 GLU CA CB sing N N 158 GLU CA HA sing N N 159 GLU C O doub N N 160 GLU C OXT sing N N 161 GLU CB CG sing N N 162 GLU CB HB2 sing N N 163 GLU CB HB3 sing N N 164 GLU CG CD sing N N 165 GLU CG HG2 sing N N 166 GLU CG HG3 sing N N 167 GLU CD OE1 doub N N 168 GLU CD OE2 sing N N 169 GLU OE2 HE2 sing N N 170 GLU OXT HXT sing N N 171 GLY N CA sing N N 172 GLY N H sing N N 173 GLY N H2 sing N N 174 GLY CA C sing N N 175 GLY CA HA2 sing N N 176 GLY CA HA3 sing N N 177 GLY C O doub N N 178 GLY C OXT sing N N 179 GLY OXT HXT sing N N 180 ILE N CA sing N N 181 ILE N H sing N N 182 ILE N H2 sing N N 183 ILE CA C sing N N 184 ILE CA CB sing N N 185 ILE CA HA sing N N 186 ILE C O doub N N 187 ILE C OXT sing N N 188 ILE CB CG1 sing N N 189 ILE CB CG2 sing N N 190 ILE CB HB sing N N 191 ILE CG1 CD1 sing N N 192 ILE CG1 HG12 sing N N 193 ILE CG1 HG13 sing N N 194 ILE CG2 HG21 sing N N 195 ILE CG2 HG22 sing N N 196 ILE CG2 HG23 sing N N 197 ILE CD1 HD11 sing N N 198 ILE CD1 HD12 sing N N 199 ILE CD1 HD13 sing N N 200 ILE OXT HXT sing N N 201 LEU N CA sing N N 202 LEU N H sing N N 203 LEU N H2 sing N N 204 LEU CA C sing N N 205 LEU CA CB sing N N 206 LEU CA HA sing N N 207 LEU C O doub N N 208 LEU C OXT sing N N 209 LEU CB CG sing N N 210 LEU CB HB2 sing N N 211 LEU CB HB3 sing N N 212 LEU CG CD1 sing N N 213 LEU CG CD2 sing N N 214 LEU CG HG sing N N 215 LEU CD1 HD11 sing N N 216 LEU CD1 HD12 sing N N 217 LEU CD1 HD13 sing N N 218 LEU CD2 HD21 sing N N 219 LEU CD2 HD22 sing N N 220 LEU CD2 HD23 sing N N 221 LEU OXT HXT sing N N 222 LYS N CA sing N N 223 LYS N H sing N N 224 LYS N H2 sing N N 225 LYS CA C sing N N 226 LYS CA CB sing N N 227 LYS CA HA sing N N 228 LYS C O doub N N 229 LYS C OXT sing N N 230 LYS CB CG sing N N 231 LYS CB HB2 sing N N 232 LYS CB HB3 sing N N 233 LYS CG CD sing N N 234 LYS CG HG2 sing N N 235 LYS CG HG3 sing N N 236 LYS CD CE sing N N 237 LYS CD HD2 sing N N 238 LYS CD HD3 sing N N 239 LYS CE NZ sing N N 240 LYS CE HE2 sing N N 241 LYS CE HE3 sing N N 242 LYS NZ HZ1 sing N N 243 LYS NZ HZ2 sing N N 244 LYS NZ HZ3 sing N N 245 LYS OXT HXT sing N N 246 SER N CA sing N N 247 SER N H sing N N 248 SER N H2 sing N N 249 SER CA C sing N N 250 SER CA CB sing N N 251 SER CA HA sing N N 252 SER C O doub N N 253 SER C OXT sing N N 254 SER CB OG sing N N 255 SER CB HB2 sing N N 256 SER CB HB3 sing N N 257 SER OG HG sing N N 258 SER OXT HXT sing N N 259 THR N CA sing N N 260 THR N H sing N N 261 THR N H2 sing N N 262 THR CA C sing N N 263 THR CA CB sing N N 264 THR CA HA sing N N 265 THR C O doub N N 266 THR C OXT sing N N 267 THR CB OG1 sing N N 268 THR CB CG2 sing N N 269 THR CB HB sing N N 270 THR OG1 HG1 sing N N 271 THR CG2 HG21 sing N N 272 THR CG2 HG22 sing N N 273 THR CG2 HG23 sing N N 274 THR OXT HXT sing N N 275 TYR N CA sing N N 276 TYR N H sing N N 277 TYR N H2 sing N N 278 TYR CA C sing N N 279 TYR CA CB sing N N 280 TYR CA HA sing N N 281 TYR C O doub N N 282 TYR C OXT sing N N 283 TYR CB CG sing N N 284 TYR CB HB2 sing N N 285 TYR CB HB3 sing N N 286 TYR CG CD1 doub Y N 287 TYR CG CD2 sing Y N 288 TYR CD1 CE1 sing Y N 289 TYR CD1 HD1 sing N N 290 TYR CD2 CE2 doub Y N 291 TYR CD2 HD2 sing N N 292 TYR CE1 CZ doub Y N 293 TYR CE1 HE1 sing N N 294 TYR CE2 CZ sing Y N 295 TYR CE2 HE2 sing N N 296 TYR CZ OH sing N N 297 TYR OH HH sing N N 298 TYR OXT HXT sing N N 299 U OP3 P sing N N 300 U OP3 HOP3 sing N N 301 U P OP1 doub N N 302 U P OP2 sing N N 303 U P "O5'" sing N N 304 U OP2 HOP2 sing N N 305 U "O5'" "C5'" sing N N 306 U "C5'" "C4'" sing N N 307 U "C5'" "H5'" sing N N 308 U "C5'" "H5''" sing N N 309 U "C4'" "O4'" sing N N 310 U "C4'" "C3'" sing N N 311 U "C4'" "H4'" sing N N 312 U "O4'" "C1'" sing N N 313 U "C3'" "O3'" sing N N 314 U "C3'" "C2'" sing N N 315 U "C3'" "H3'" sing N N 316 U "O3'" "HO3'" sing N N 317 U "C2'" "O2'" sing N N 318 U "C2'" "C1'" sing N N 319 U "C2'" "H2'" sing N N 320 U "O2'" "HO2'" sing N N 321 U "C1'" N1 sing N N 322 U "C1'" "H1'" sing N N 323 U N1 C2 sing N N 324 U N1 C6 sing N N 325 U C2 O2 doub N N 326 U C2 N3 sing N N 327 U N3 C4 sing N N 328 U N3 H3 sing N N 329 U C4 O4 doub N N 330 U C4 C5 sing N N 331 U C5 C6 doub N N 332 U C5 H5 sing N N 333 U C6 H6 sing N N 334 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1NYB 'a-form double helix' 1NYB 'hairpin loop' 1NYB 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 24 1_555 -0.841 -0.216 0.099 2.292 -11.209 1.542 1 B_G1:C24_B B 1 ? B 24 ? 19 1 1 A G 2 1_555 A C 23 1_555 -0.521 -0.032 -0.039 -6.700 -19.647 5.231 2 B_G2:C23_B B 2 ? B 23 ? 19 1 1 A U 3 1_555 A G 22 1_555 2.240 -0.299 0.319 -10.611 -15.224 5.219 3 B_U3:G22_B B 3 ? B 22 ? 28 1 1 A U 4 1_555 A A 21 1_555 -0.089 0.075 0.274 -4.574 -11.182 2.219 4 B_U4:A21_B B 4 ? B 21 ? 20 1 1 A C 5 1_555 A G 20 1_555 0.306 -0.087 0.133 5.621 -12.139 -1.244 5 B_C5:G20_B B 5 ? B 20 ? 19 1 1 A A 6 1_555 A U 19 1_555 0.130 0.062 -0.035 -1.547 -9.050 2.999 6 B_A6:U19_B B 6 ? B 19 ? 20 1 1 A C 7 1_555 A G 18 1_555 0.381 -0.084 0.075 -3.927 -4.989 0.254 7 B_C7:G18_B B 7 ? B 18 ? 19 1 1 A C 8 1_555 A G 17 1_555 0.298 -0.088 -0.054 8.441 -16.713 -0.825 8 B_C8:G17_B B 8 ? B 17 ? 19 1 1 A U 9 1_555 A G 16 1_555 2.170 -0.470 0.279 -0.258 -16.813 -3.515 9 B_U9:G16_B B 9 ? B 16 ? 28 ? 1 A C 10 1_555 A C 15 1_555 3.984 -1.799 -0.763 3.584 8.155 -24.184 10 B_C10:C15_B B 10 ? B 15 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 24 1_555 A G 2 1_555 A C 23 1_555 0.082 -1.627 3.378 1.143 7.925 31.171 -4.317 0.051 2.889 14.452 -2.084 32.158 1 BB_G1G2:C23C24_BB B 1 ? B 24 ? B 2 ? B 23 ? 1 A G 2 1_555 A C 23 1_555 A U 3 1_555 A G 22 1_555 0.252 -1.036 3.260 0.592 3.180 45.767 -1.601 -0.272 3.187 4.083 -0.760 45.875 2 BB_G2U3:G22C23_BB B 2 ? B 23 ? B 3 ? B 22 ? 1 A U 3 1_555 A G 22 1_555 A U 4 1_555 A A 21 1_555 -0.301 -2.111 2.746 4.380 6.639 19.787 -7.690 2.121 1.840 18.389 -12.132 21.311 3 BB_U3U4:A21G22_BB B 3 ? B 22 ? B 4 ? B 21 ? 1 A U 4 1_555 A A 21 1_555 A C 5 1_555 A G 20 1_555 -0.044 -1.813 2.935 -0.589 1.258 26.344 -4.269 -0.042 2.847 2.757 1.292 26.380 4 BB_U4C5:G20A21_BB B 4 ? B 21 ? B 5 ? B 20 ? 1 A C 5 1_555 A G 20 1_555 A A 6 1_555 A U 19 1_555 0.394 -1.787 3.377 0.615 3.845 31.414 -3.989 -0.609 3.149 7.067 -1.131 31.648 5 BB_C5A6:U19G20_BB B 5 ? B 20 ? B 6 ? B 19 ? 1 A A 6 1_555 A U 19 1_555 A C 7 1_555 A G 18 1_555 -0.282 -2.474 3.365 -1.360 0.727 27.870 -5.306 0.253 3.310 1.509 2.821 27.912 6 BB_A6C7:G18U19_BB B 6 ? B 19 ? B 7 ? B 18 ? 1 A C 7 1_555 A G 18 1_555 A C 8 1_555 A G 17 1_555 -0.421 -2.622 3.247 4.088 -1.722 23.968 -5.667 2.290 3.307 -4.101 -9.738 24.369 7 BB_C7C8:G17G18_BB B 7 ? B 18 ? B 8 ? B 17 ? 1 A C 8 1_555 A G 17 1_555 A U 9 1_555 A G 16 1_555 0.417 -2.117 3.510 -0.911 6.676 36.081 -4.290 -0.789 3.071 10.663 1.456 36.684 8 BB_C8U9:G16G17_BB B 8 ? B 17 ? B 9 ? B 16 ? 1 A U 9 1_555 A G 16 1_555 A C 10 1_555 A C 15 1_555 -2.721 -2.474 3.424 7.447 6.875 32.486 -5.201 5.705 2.210 11.932 -12.925 33.989 9 BB_U9C10:C15G16_BB B 9 ? B 16 ? B 10 ? B 15 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Varian INOVA 600 2 ? Bruker DRX 750 3 ? Bruker AMX 600 # _atom_sites.entry_id 1NYB _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_