HEADER PHOSPHOTRANSFERASE 22-APR-96 1NYG TITLE NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE, TITLE 2 FAMILY OF 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FYN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 82 - 148; COMPND 5 EC: 2.7.1.112; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: N-TERMINAL GS FROM EXPRESSION SYSTEM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS SH3 DOMAIN, POLYPROLINE-BINDING, PHOSPHOTRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.J.MORTON,D.J.R.PUGH,I.D.CAMPBELL REVDAT 3 23-FEB-22 1NYG 1 REMARK REVDAT 2 24-FEB-09 1NYG 1 VERSN REVDAT 1 08-NOV-96 1NYG 0 JRNL AUTH C.J.MORTON,D.J.PUGH,E.L.BROWN,J.D.KAHMANN,D.A.RENZONI, JRNL AUTH 2 I.D.CAMPBELL JRNL TITL SOLUTION STRUCTURE AND PEPTIDE BINDING OF THE SH3 DOMAIN JRNL TITL 2 FROM HUMAN FYN. JRNL REF STRUCTURE V. 4 705 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8805554 JRNL DOI 10.1016/S0969-2126(96)00076-7 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.E.NOBLE,A.MUSACCHIO,M.SARASTE,S.A.COURTNEIDGE,R.K.WIERENGA REMARK 1 TITL CRYSTAL STRUCTURE OF THE SH3 DOMAIN IN HUMAN FYN; COMPARISON REMARK 1 TITL 2 OF THE THREE-DIMENSIONAL STRUCTURES OF SH3 DOMAINS IN REMARK 1 TITL 3 TYROSINE KINASES AND SPECTRIN REMARK 1 REF EMBO J. V. 12 2617 1993 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NYG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175410. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 THR A 82 REMARK 465 GLY A 83 REMARK 465 ASP A 142 REMARK 465 SER A 143 REMARK 465 ILE A 144 REMARK 465 GLN A 145 REMARK 465 ALA A 146 REMARK 465 GLU A 147 REMARK 465 GLU A 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 85 86.69 -150.46 REMARK 500 1 ALA A 95 103.73 -41.85 REMARK 500 1 SER A 114 -81.96 -109.39 REMARK 500 1 GLU A 116 -161.77 40.15 REMARK 500 1 ASP A 118 -36.50 -176.59 REMARK 500 2 ALA A 95 96.47 -52.25 REMARK 500 2 THR A 97 -169.75 -119.66 REMARK 500 2 PHE A 103 -178.36 -172.83 REMARK 500 2 SER A 114 84.95 -155.79 REMARK 500 2 SER A 115 -79.25 -119.68 REMARK 500 2 GLU A 116 -166.28 -106.18 REMARK 500 3 THR A 85 65.23 -162.12 REMARK 500 3 ALA A 95 93.22 -46.53 REMARK 500 3 PHE A 103 -173.03 -178.64 REMARK 500 3 SER A 114 82.90 -161.52 REMARK 500 3 SER A 115 23.22 -160.55 REMARK 500 4 ALA A 95 107.58 -56.96 REMARK 500 4 ASP A 118 -74.46 -160.23 REMARK 500 4 THR A 126 -64.64 -102.33 REMARK 500 5 PHE A 103 -169.99 -161.98 REMARK 500 5 THR A 127 -67.85 -91.79 REMARK 500 6 THR A 85 79.97 -150.85 REMARK 500 6 ALA A 95 96.48 -42.05 REMARK 500 6 SER A 114 23.30 -150.77 REMARK 500 6 ASP A 118 -41.56 -175.41 REMARK 500 7 THR A 85 63.90 -171.27 REMARK 500 7 PHE A 103 -173.75 -174.48 REMARK 500 7 SER A 114 87.28 -163.86 REMARK 500 7 SER A 115 53.79 -92.44 REMARK 500 7 GLU A 116 100.55 49.40 REMARK 500 8 ALA A 95 108.28 -48.25 REMARK 500 8 PHE A 103 -172.51 -179.22 REMARK 500 8 SER A 114 -102.11 -118.45 REMARK 500 8 SER A 115 47.27 38.64 REMARK 500 8 ASP A 118 25.10 -152.23 REMARK 500 9 ALA A 95 97.88 -51.64 REMARK 500 9 SER A 114 70.66 -116.97 REMARK 500 9 SER A 115 -81.13 -89.06 REMARK 500 9 ASP A 118 -55.47 -139.99 REMARK 500 10 ALA A 95 107.66 -56.46 REMARK 500 10 PHE A 103 -173.10 -175.21 REMARK 500 10 SER A 114 48.55 -107.41 REMARK 500 10 GLU A 116 -166.06 -104.65 REMARK 500 11 THR A 85 87.90 -164.75 REMARK 500 11 LYS A 105 109.73 -55.76 REMARK 500 11 ILE A 111 101.03 -50.23 REMARK 500 11 SER A 114 -87.20 -152.01 REMARK 500 11 SER A 115 27.58 44.41 REMARK 500 11 ASP A 118 -39.20 175.74 REMARK 500 12 THR A 85 66.51 -154.12 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 96 0.29 SIDE CHAIN REMARK 500 1 ARG A 123 0.31 SIDE CHAIN REMARK 500 2 ARG A 96 0.12 SIDE CHAIN REMARK 500 2 ARG A 123 0.22 SIDE CHAIN REMARK 500 3 ARG A 96 0.31 SIDE CHAIN REMARK 500 3 ARG A 123 0.20 SIDE CHAIN REMARK 500 4 ARG A 96 0.32 SIDE CHAIN REMARK 500 4 ARG A 123 0.26 SIDE CHAIN REMARK 500 5 ARG A 96 0.28 SIDE CHAIN REMARK 500 5 ARG A 123 0.26 SIDE CHAIN REMARK 500 6 ARG A 96 0.24 SIDE CHAIN REMARK 500 6 ARG A 123 0.31 SIDE CHAIN REMARK 500 7 ARG A 96 0.23 SIDE CHAIN REMARK 500 7 ARG A 123 0.31 SIDE CHAIN REMARK 500 8 ARG A 96 0.25 SIDE CHAIN REMARK 500 8 ARG A 123 0.30 SIDE CHAIN REMARK 500 9 ARG A 96 0.14 SIDE CHAIN REMARK 500 9 ARG A 123 0.27 SIDE CHAIN REMARK 500 10 ARG A 96 0.25 SIDE CHAIN REMARK 500 10 ARG A 123 0.27 SIDE CHAIN REMARK 500 11 ARG A 96 0.09 SIDE CHAIN REMARK 500 11 ARG A 123 0.25 SIDE CHAIN REMARK 500 12 ARG A 96 0.32 SIDE CHAIN REMARK 500 12 ARG A 123 0.23 SIDE CHAIN REMARK 500 13 ARG A 96 0.32 SIDE CHAIN REMARK 500 13 ARG A 123 0.31 SIDE CHAIN REMARK 500 14 ARG A 96 0.27 SIDE CHAIN REMARK 500 14 ARG A 123 0.28 SIDE CHAIN REMARK 500 15 ARG A 96 0.30 SIDE CHAIN REMARK 500 15 ARG A 123 0.08 SIDE CHAIN REMARK 500 16 ARG A 96 0.26 SIDE CHAIN REMARK 500 16 ARG A 123 0.32 SIDE CHAIN REMARK 500 17 ARG A 96 0.30 SIDE CHAIN REMARK 500 17 ARG A 123 0.17 SIDE CHAIN REMARK 500 18 ARG A 96 0.19 SIDE CHAIN REMARK 500 18 ARG A 123 0.31 SIDE CHAIN REMARK 500 19 ARG A 123 0.31 SIDE CHAIN REMARK 500 20 ARG A 96 0.32 SIDE CHAIN REMARK 500 20 ARG A 123 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NYF RELATED DB: PDB DBREF 1NYG A 82 148 UNP P06241 FYN_HUMAN 81 147 SEQRES 1 A 67 THR GLY VAL THR LEU PHE VAL ALA LEU TYR ASP TYR GLU SEQRES 2 A 67 ALA ARG THR GLU ASP ASP LEU SER PHE HIS LYS GLY GLU SEQRES 3 A 67 LYS PHE GLN ILE LEU ASN SER SER GLU GLY ASP TRP TRP SEQRES 4 A 67 GLU ALA ARG SER LEU THR THR GLY GLU THR GLY TYR ILE SEQRES 5 A 67 PRO SER ASN TYR VAL ALA PRO VAL ASP SER ILE GLN ALA SEQRES 6 A 67 GLU GLU HELIX 1 HA PRO A 134 TYR A 137 5 4 SHEET 1 S1 3 LYS A 108 LEU A 112 0 SHEET 2 S1 3 LEU A 86 ALA A 89 -1 N PHE A 87 O PHE A 109 SHEET 3 S1 3 VAL A 138 PRO A 140 -1 O ALA A 139 N VAL A 88 SHEET 1 S2 3 ASN A 113 SER A 114 0 SHEET 2 S2 3 TRP A 119 SER A 124 -1 N GLU A 121 O ASN A 113 SHEET 3 S2 3 THR A 130 ILE A 133 -1 O ILE A 133 N TRP A 120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1