HEADER IMMUNE SYSTEM 13-FEB-03 1NYO TITLE SOLUTION STRUCTURE OF THE ANTIGENIC TB PROTEIN MPT70/MPB70 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGENIC PROTEIN MPT70; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYCOBACTERIAL PROTEIN MPT70, MPB70; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: MPT70/MPB70; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBLUESCRIPT KS+ KEYWDS SEVEN-STRANDED BETA-BARREL, FASCICLIN DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, TB STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, TBSGC, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 38 AUTHOR M.J.BLOEMINK,E.DENTTEN,R.G.HEWINSON,R.A.WILLIAMSON,M.D.CARR,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 6 06-NOV-24 1NYO 1 REMARK REVDAT 5 23-FEB-22 1NYO 1 REMARK REVDAT 4 24-FEB-09 1NYO 1 VERSN REVDAT 3 01-FEB-05 1NYO 1 AUTHOR KEYWDS REMARK SOURCE REVDAT 2 23-DEC-03 1NYO 1 JRNL REVDAT 1 19-AUG-03 1NYO 0 JRNL AUTH M.D.CARR,M.J.BLOEMINK,E.DENTTEN,A.O.WHELAN,S.V.GORDON, JRNL AUTH 2 G.KELLY,T.A.FRENKIEL,R.G.HEWINSON,R.A.WILLIAMSON JRNL TITL SOLUTION STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS COMPLEX JRNL TITL 2 PROTEIN MPB70: FROM TUBERCULOSIS PATHOGENESIS TO INHERITED JRNL TITL 3 HUMAN CORNEAL DESEASE JRNL REF J.BIOL.CHEM. V. 278 43736 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12917404 JRNL DOI 10.1074/JBC.M307235200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.BLOEMINK,J.KEMMINK,E.DENTTEN,F.W.MUSKETT,A.WHELAN, REMARK 1 AUTH 2 A.SHEIKH,G.HEWINSON,R.A.WILLIAMSON,M.D.CARR REMARK 1 TITL SEQUENCE-SPECIFIC ASSIGNMENT AND DETERMINATION OF THE REMARK 1 TITL 2 SECONDARY STRUCTURE OF THE 163-RESIDUE M.TUBERCULOSIS AND REMARK 1 TITL 3 M.BOVIS ANTIGENIC PROTEIN MPB70 REMARK 1 REF J.BIOMOL.NMR V. 20 185 2001 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1011239727839 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, CYANA 1.0.3 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SOLUTION STRUCTURES ARE BASED ON A REMARK 3 TOTAL OF 2892 NOE-DERIVED DISTANCE CONSTRAINTS, 98 DISTANCE REMARK 3 CONSTRAINTS FROM HYDROGEN BONDS AND 35 TORSION ANGLE CONSTRAINTS REMARK 4 REMARK 4 1NYO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018357. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20MM PHOSPHATE/100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM MPB70 U-15N,13C, 20MM REMARK 210 PHOSPHATE BUFFER/100MM NACL; REMARK 210 1.0MM MPB70 U-15N, 20MM REMARK 210 PHOSPHATE BUFFER/100MM NACL; REMARK 210 1.0MM MPB70 U-15N,U-13C (EXCEPT REMARK 210 Y,H,F(12C)), 20MM PHOSPHATE REMARK 210 BUFFER/100MM NACL; 1.0MM MPB70 U- REMARK 210 14N,12C, 20MM PHOSPHATE BUFFER/ REMARK 210 100MM NACL; 1.0MM MPB70 U-14N, REMARK 210 12C, 20MM PHOSPHATE BUFFER/100MM REMARK 210 NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNHB; 3D_15N- REMARK 210 SEPARATED_TOCSY (SHORT TMIX); 2D REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE SGI6X, XEASY 1.3.11, REMARK 210 CYANA 1.0.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS WITH REMARK 210 SIMMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 38 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 72 O ILE A 155 1.40 REMARK 500 O PHE A 69 HD1 HIS A 101 1.45 REMARK 500 O TYR A 11 H ASN A 15 1.51 REMARK 500 HH TYR A 11 O ALA A 20 1.51 REMARK 500 O GLY A 7 H TYR A 11 1.52 REMARK 500 HG SER A 26 O THR A 147 1.53 REMARK 500 O PRO A 29 H ALA A 33 1.53 REMARK 500 O ALA A 81 H ASP A 85 1.57 REMARK 500 O VAL A 135 H ALA A 138 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 9 -73.44 -68.23 REMARK 500 1 ALA A 31 -97.33 -55.98 REMARK 500 1 VAL A 32 -33.94 -38.78 REMARK 500 1 ASN A 36 -39.38 -136.49 REMARK 500 1 THR A 41 -35.52 -34.58 REMARK 500 1 ALA A 46 -71.63 -66.09 REMARK 500 1 ASN A 56 110.99 -169.73 REMARK 500 1 SER A 63 110.55 -163.16 REMARK 500 1 GLN A 65 109.06 -50.46 REMARK 500 1 THR A 67 87.97 -152.16 REMARK 500 1 THR A 72 175.55 -53.50 REMARK 500 1 THR A 89 -41.09 -160.87 REMARK 500 1 SER A 91 26.37 -159.48 REMARK 500 1 SER A 92 -44.62 -148.86 REMARK 500 1 GLN A 106 120.57 77.58 REMARK 500 1 ALA A 110 -45.51 -135.33 REMARK 500 1 LEU A 119 -30.84 -39.69 REMARK 500 1 THR A 125 96.14 -68.59 REMARK 500 1 GLN A 129 -75.36 -136.16 REMARK 500 1 ASN A 131 40.41 -91.96 REMARK 500 1 ASN A 137 -14.29 84.25 REMARK 500 1 VAL A 140 98.03 -55.50 REMARK 500 1 THR A 147 -105.04 -87.63 REMARK 500 1 ASN A 149 38.88 -150.98 REMARK 500 1 ALA A 150 141.89 -172.13 REMARK 500 1 LEU A 159 148.63 -33.24 REMARK 500 2 ASP A 2 169.74 57.62 REMARK 500 2 ALA A 9 -70.37 -84.73 REMARK 500 2 THR A 17 -157.42 -129.50 REMARK 500 2 VAL A 30 -109.22 28.65 REMARK 500 2 ALA A 31 -70.46 -11.45 REMARK 500 2 THR A 41 -39.51 -32.64 REMARK 500 2 ALA A 46 -71.70 -68.29 REMARK 500 2 GLN A 50 -29.47 -37.79 REMARK 500 2 LEU A 61 -38.62 -37.98 REMARK 500 2 SER A 63 109.05 -166.26 REMARK 500 2 THR A 67 87.10 -151.54 REMARK 500 2 THR A 72 -179.96 -62.57 REMARK 500 2 ALA A 81 -30.95 -39.45 REMARK 500 2 THR A 89 10.17 -141.66 REMARK 500 2 SER A 91 23.94 -144.91 REMARK 500 2 SER A 92 -45.62 -141.35 REMARK 500 2 VAL A 102 111.70 -162.58 REMARK 500 2 PRO A 109 50.00 -74.92 REMARK 500 2 ALA A 110 -46.48 -132.83 REMARK 500 2 THR A 125 73.27 -69.80 REMARK 500 2 GLN A 129 -37.59 90.45 REMARK 500 2 SER A 132 42.45 85.92 REMARK 500 2 LEU A 133 168.75 -45.11 REMARK 500 2 ASN A 137 -39.66 88.05 REMARK 500 REMARK 500 THIS ENTRY HAS 1138 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 69 ALA A 70 1 -138.30 REMARK 500 PHE A 69 ALA A 70 2 -139.98 REMARK 500 PHE A 69 ALA A 70 3 -136.92 REMARK 500 PHE A 69 ALA A 70 4 -139.21 REMARK 500 PHE A 69 ALA A 70 5 -138.59 REMARK 500 PHE A 69 ALA A 70 6 -136.03 REMARK 500 PHE A 69 ALA A 70 7 -139.53 REMARK 500 PHE A 69 ALA A 70 8 -137.08 REMARK 500 PHE A 69 ALA A 70 9 -138.85 REMARK 500 ASN A 36 ASN A 37 10 139.99 REMARK 500 PHE A 69 ALA A 70 10 -137.24 REMARK 500 PHE A 69 ALA A 70 11 -135.31 REMARK 500 PHE A 69 ALA A 70 12 -137.35 REMARK 500 PHE A 69 ALA A 70 13 -139.35 REMARK 500 PHE A 69 ALA A 70 14 -140.61 REMARK 500 PHE A 69 ALA A 70 15 -140.30 REMARK 500 PHE A 69 ALA A 70 16 -135.68 REMARK 500 PHE A 69 ALA A 70 17 -136.51 REMARK 500 PHE A 69 ALA A 70 18 -137.66 REMARK 500 PHE A 69 ALA A 70 19 -135.98 REMARK 500 ASN A 36 ASN A 37 20 146.95 REMARK 500 PHE A 69 ALA A 70 20 -136.51 REMARK 500 ASN A 36 ASN A 37 21 127.26 REMARK 500 PHE A 69 ALA A 70 21 -138.65 REMARK 500 PHE A 69 ALA A 70 22 -137.72 REMARK 500 PHE A 69 ALA A 70 23 -141.45 REMARK 500 PHE A 69 ALA A 70 24 -136.07 REMARK 500 PHE A 69 ALA A 70 25 -139.43 REMARK 500 PHE A 69 ALA A 70 26 -135.48 REMARK 500 PHE A 69 ALA A 70 27 -137.84 REMARK 500 PHE A 69 ALA A 70 28 -135.58 REMARK 500 PHE A 69 ALA A 70 29 -136.30 REMARK 500 PHE A 69 ALA A 70 30 -136.47 REMARK 500 VAL A 4 GLY A 5 31 144.51 REMARK 500 PHE A 69 ALA A 70 31 -139.79 REMARK 500 PHE A 69 ALA A 70 32 -138.35 REMARK 500 ASN A 36 ASN A 37 33 129.96 REMARK 500 PHE A 69 ALA A 70 33 -139.39 REMARK 500 PHE A 69 ALA A 70 34 -137.55 REMARK 500 PHE A 69 ALA A 70 35 -138.62 REMARK 500 PHE A 69 ALA A 70 36 -137.32 REMARK 500 PHE A 69 ALA A 70 37 -138.50 REMARK 500 ASN A 36 ASN A 37 38 128.82 REMARK 500 PHE A 69 ALA A 70 38 -137.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV2875 RELATED DB: TARGETDB DBREF 1NYO A 1 163 UNP P0A668 MP70_MYCTU 31 193 SEQRES 1 A 163 GLY ASP LEU VAL GLY PRO GLY CYS ALA GLU TYR ALA ALA SEQRES 2 A 163 ALA ASN PRO THR GLY PRO ALA SER VAL GLN GLY MET SER SEQRES 3 A 163 GLN ASP PRO VAL ALA VAL ALA ALA SER ASN ASN PRO GLU SEQRES 4 A 163 LEU THR THR LEU THR ALA ALA LEU SER GLY GLN LEU ASN SEQRES 5 A 163 PRO GLN VAL ASN LEU VAL ASP THR LEU ASN SER GLY GLN SEQRES 6 A 163 TYR THR VAL PHE ALA PRO THR ASN ALA ALA PHE SER LYS SEQRES 7 A 163 LEU PRO ALA SER THR ILE ASP GLU LEU LYS THR ASN SER SEQRES 8 A 163 SER LEU LEU THR SER ILE LEU THR TYR HIS VAL VAL ALA SEQRES 9 A 163 GLY GLN THR SER PRO ALA ASN VAL VAL GLY THR ARG GLN SEQRES 10 A 163 THR LEU GLN GLY ALA SER VAL THR VAL THR GLY GLN GLY SEQRES 11 A 163 ASN SER LEU LYS VAL GLY ASN ALA ASP VAL VAL CYS GLY SEQRES 12 A 163 GLY VAL SER THR ALA ASN ALA THR VAL TYR MET ILE ASP SEQRES 13 A 163 SER VAL LEU MET PRO PRO ALA HELIX 1 1 PRO A 6 ASN A 15 1 10 HELIX 2 2 GLN A 23 ASP A 28 1 6 HELIX 3 3 PRO A 29 SER A 35 1 7 HELIX 4 4 LEU A 40 GLY A 49 1 10 HELIX 5 5 LEU A 57 ASN A 62 1 6 HELIX 6 6 THR A 72 LEU A 79 1 8 HELIX 7 7 PRO A 80 LYS A 88 1 9 HELIX 8 8 SER A 92 HIS A 101 1 10 SHEET 1 A 3 VAL A 102 ALA A 104 0 SHEET 2 A 3 TYR A 66 VAL A 68 -1 N THR A 67 O VAL A 103 SHEET 3 A 3 ALA A 150 VAL A 152 1 O THR A 151 N VAL A 68 SHEET 1 B 4 GLY A 114 GLN A 117 0 SHEET 2 B 4 SER A 123 GLY A 128 -1 O VAL A 126 N GLY A 114 SHEET 3 B 4 LEU A 133 VAL A 135 -1 O LYS A 134 N THR A 127 SHEET 4 B 4 ALA A 138 ASP A 139 -1 O ALA A 138 N VAL A 135 SSBOND 1 CYS A 8 CYS A 142 1555 1555 1.95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1