HEADER SIGNALING PROTEIN 19-FEB-03 1NZS TITLE NMR STRUCTURES OF PHOSPHORYLATED CARBOXY TERMINUS OF BOVINE RHODOPSIN TITLE 2 IN ARRESTIN-BOUND STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 19-MER PEPTIDE FRAGMENT OF RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 330-348; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: ALL SER AND THR PHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN BOS TAURUS. IN A SOURCE 4 SYNTHETIC PEPTIDE, ALL SERINES AND THREONINES ARE PHOSPHORYLATED. KEYWDS RHODOPSIN, GPCR, ARRESTIN, PHOSPHORYLATION, HELIX-LOOP, BALL-AND- KEYWDS 2 CHAIN, BOUND CONFORMATION, SIGNAL TERMINATION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 MDLTYP MINIMIZED AVERAGE AUTHOR O.G.KISSELEV,J.H.MCDOWELL,P.A.HARGRAVE REVDAT 4 23-FEB-22 1NZS 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1NZS 1 VERSN REVDAT 2 22-JUN-04 1NZS 1 JRNL REVDAT 1 02-MAR-04 1NZS 0 JRNL AUTH O.G.KISSELEV,J.H.MCDOWELL,P.A.HARGRAVE JRNL TITL THE ARRESTIN-BOUND CONFORMATION AND DYNAMICS OF THE JRNL TITL 2 PHOSPHORYLATED CARBOXY-TERMINAL REGION OF RHODOPSIN. JRNL REF FEBS LETT. V. 564 307 2004 JRNL REFN ISSN 0014-5793 JRNL PMID 15111114 JRNL DOI 10.1016/S0014-5793(04)00226-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 5.2, TINKER 3.9 REMARK 3 AUTHORS : VARIAN. (VNMR), PONDER, J.W. (TINKER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 EXPERIMENTAL DATA ARE FOR THE 7-PHOSPHO-RH(330-348) BOUND TO REMARK 3 ARRESTIN. REMARK 3 CALCULATIONS AND STRUCTURES SUBMITTED ARE WITHOUT PHOSPHATE GROUPS. REMARK 4 REMARK 4 1NZS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018396. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1M PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.16 MM OF PURIFIED ARRESTIN, REMARK 210 1.77 MM OF 7PP, 7-PHOSPHO-RH(330- REMARK 210 348) OR UNPHOSPHORYLATED RH(330- REMARK 210 348) IN SODIUM PHOSPHATE BUFFER, REMARK 210 0.1 M, PH 6.5 AND 10% D2O IN A REMARK 210 TOTAL VOLUME OF 0.6 ML REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 5.2, TINKER 3.9 REMARK 210 METHOD USED : DISTANCE GEOMETRY, CONSTRAINED REMARK 210 MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-16 REMARK 470 RES CSSEQI ATOMS REMARK 470 SEP A 334 P O1P O2P O3P REMARK 470 TPO A 335 P O1P O2P O3P REMARK 470 TPO A 336 P O1P O2P O3P REMARK 470 SEP A 338 P O1P O2P O3P REMARK 470 TPO A 340 P O1P O2P O3P REMARK 470 TPO A 342 P O1P O2P O3P REMARK 470 SEP A 343 P O1P O2P O3P REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 ASP A 330 CG ASP A 330 OD1 -0.147 REMARK 500 1 ASP A 330 CG ASP A 330 OD2 -0.160 REMARK 500 1 ASP A 331 CG ASP A 331 OD1 -0.545 REMARK 500 1 ASP A 331 CG ASP A 331 OD2 -0.574 REMARK 500 1 GLU A 332 CD GLU A 332 OE1 -0.110 REMARK 500 1 GLU A 332 CD GLU A 332 OE2 -0.112 REMARK 500 1 SEP A 338 C LYS A 339 N -0.153 REMARK 500 1 LYS A 339 CE LYS A 339 NZ -0.206 REMARK 500 1 GLU A 341 CD GLU A 341 OE1 -0.075 REMARK 500 1 GLU A 341 CD GLU A 341 OE2 -0.079 REMARK 500 1 GLN A 344 CG GLN A 344 CD -0.239 REMARK 500 1 GLN A 344 CD GLN A 344 OE1 -0.238 REMARK 500 1 GLN A 344 CD GLN A 344 NE2 -0.249 REMARK 500 1 VAL A 345 CB VAL A 345 CG1 -0.333 REMARK 500 1 VAL A 345 CB VAL A 345 CG2 -0.327 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 331 OD1 - CG - OD2 ANGL. DEV. = -49.6 DEGREES REMARK 500 1 ASP A 331 CB - CG - OD1 ANGL. DEV. = 25.3 DEGREES REMARK 500 1 ASP A 331 CB - CG - OD2 ANGL. DEV. = 24.4 DEGREES REMARK 500 1 VAL A 345 CG1 - CB - CG2 ANGL. DEV. = -15.9 DEGREES REMARK 500 1 VAL A 345 CA - CB - CG1 ANGL. DEV. = 11.3 DEGREES REMARK 500 1 VAL A 345 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SEP A 338 43.92 -84.68 REMARK 500 1 TPO A 340 -164.45 -121.36 REMARK 500 2 ASP A 331 -79.61 -85.28 REMARK 500 2 VAL A 337 -75.09 -67.73 REMARK 500 2 TPO A 340 -145.32 -115.18 REMARK 500 3 ASP A 331 -71.43 -91.04 REMARK 500 3 TPO A 340 -148.51 -126.27 REMARK 500 4 ASP A 331 -70.08 -95.13 REMARK 500 4 SEP A 334 -87.33 -64.47 REMARK 500 4 TPO A 335 -164.21 -168.60 REMARK 500 4 LYS A 339 106.35 -167.07 REMARK 500 5 SEP A 334 -78.13 -70.77 REMARK 500 5 VAL A 337 -88.41 -80.06 REMARK 500 5 TPO A 340 -144.61 -117.99 REMARK 500 6 VAL A 337 -71.34 -67.68 REMARK 500 6 TPO A 340 -167.83 -108.12 REMARK 500 7 TPO A 335 135.98 -175.63 REMARK 500 7 VAL A 337 -78.46 -71.72 REMARK 500 7 SEP A 338 45.46 -77.98 REMARK 500 8 TPO A 335 136.29 -173.51 REMARK 500 8 SEP A 338 37.06 -95.70 REMARK 500 9 VAL A 337 -71.50 -69.89 REMARK 500 9 TPO A 340 -169.83 -123.59 REMARK 500 10 TPO A 335 137.83 -176.69 REMARK 500 10 LYS A 339 95.90 -65.18 REMARK 500 11 ASP A 331 -74.42 -104.59 REMARK 500 11 SEP A 334 -87.44 -20.20 REMARK 500 11 TPO A 335 168.20 173.63 REMARK 500 11 VAL A 337 -70.66 -66.76 REMARK 500 12 VAL A 337 -70.26 -69.55 REMARK 500 12 SEP A 338 26.95 -76.18 REMARK 500 12 TPO A 340 -165.22 -121.83 REMARK 500 13 TPO A 340 -164.67 -120.47 REMARK 500 14 SEP A 334 -80.94 -53.35 REMARK 500 14 VAL A 337 -74.55 -72.96 REMARK 500 14 SEP A 338 38.09 -76.63 REMARK 500 14 TPO A 340 -148.95 -124.92 REMARK 500 15 SEP A 334 -85.38 -62.32 REMARK 500 15 VAL A 337 -88.66 -114.77 REMARK 500 15 SEP A 338 79.73 -110.92 REMARK 500 15 TPO A 340 -147.50 -118.39 REMARK 500 16 SEP A 334 -77.98 -49.05 REMARK 500 16 VAL A 337 -73.90 -68.56 REMARK 500 16 LYS A 339 106.42 -57.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 1NZS A 330 348 UNP P02699 OPSD_BOVIN 330 348 SEQADV 1NZS SEP A 334 UNP P02699 SER 334 MODIFIED RESIDUE SEQADV 1NZS TPO A 335 UNP P02699 THR 335 MODIFIED RESIDUE SEQADV 1NZS TPO A 336 UNP P02699 THR 336 MODIFIED RESIDUE SEQADV 1NZS SEP A 338 UNP P02699 SER 338 MODIFIED RESIDUE SEQADV 1NZS TPO A 340 UNP P02699 THR 340 MODIFIED RESIDUE SEQADV 1NZS TPO A 342 UNP P02699 THR 342 MODIFIED RESIDUE SEQADV 1NZS SEP A 343 UNP P02699 SER 343 MODIFIED RESIDUE SEQRES 1 A 19 ASP ASP GLU ALA SEP TPO TPO VAL SEP LYS TPO GLU TPO SEQRES 2 A 19 SEP GLN VAL ALA PRO ALA MODRES 1NZS SEP A 334 SER PHOSPHOSERINE MODRES 1NZS TPO A 335 THR PHOSPHOTHREONINE MODRES 1NZS TPO A 336 THR PHOSPHOTHREONINE MODRES 1NZS SEP A 338 SER PHOSPHOSERINE MODRES 1NZS TPO A 340 THR PHOSPHOTHREONINE MODRES 1NZS TPO A 342 THR PHOSPHOTHREONINE MODRES 1NZS SEP A 343 SER PHOSPHOSERINE HET SEP A 334 7 HET TPO A 335 8 HET TPO A 336 8 HET SEP A 338 7 HET TPO A 340 8 HET TPO A 342 8 HET SEP A 343 7 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 1 TPO 4(C4 H10 N O6 P) HELIX 1 1 TPO A 340 ALA A 346 1 7 LINK C ALA A 333 N SEP A 334 1555 1555 1.29 LINK C SEP A 334 N TPO A 335 1555 1555 1.29 LINK C TPO A 335 N TPO A 336 1555 1555 1.27 LINK O TPO A 336 N VAL A 337 1555 1555 1.99 LINK C TPO A 336 N VAL A 337 1555 1555 1.24 LINK C VAL A 337 N SEP A 338 1555 1555 1.23 LINK O SEP A 338 N LYS A 339 1555 1555 1.90 LINK C SEP A 338 N LYS A 339 1555 1555 1.18 LINK C LYS A 339 N TPO A 340 1555 1555 1.30 LINK C TPO A 340 N GLU A 341 1555 1555 1.33 LINK C GLU A 341 N TPO A 342 1555 1555 1.33 LINK C TPO A 342 N SEP A 343 1555 1555 1.33 LINK C SEP A 343 N GLN A 344 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1