HEADER TRANSFERASE 30-AUG-02 1O0U OBSLTE 28-MAR-06 1O0U 2B8N TITLE CRYSTAL STRUCTURE OF GLYCERATE KINASE (TM1585) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.31; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENE: TM1585; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA KEYWDS STRUCTURAL GENOMICS, TM1585, GLYCERATE KINASE, JCSG, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 28-MAR-06 1O0U 1 OBSLTE REVDAT 5 18-JAN-05 1O0U 1 AUTHOR KEYWDS REMARK REVDAT 4 10-AUG-04 1O0U 1 HEADER COMPND KEYWDS JRNL REVDAT 4 2 1 TITLE REMARK REVDAT 3 04-MAY-04 1O0U 1 REMARK REVDAT 2 08-JUL-03 1O0U 1 REMARK REVDAT 1 06-NOV-02 1O0U 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GLYCERATE KINASE (TM1585) JRNL TITL 2 FROM THERMOTOGA MARITIMA AT 2.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 17575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.292 REMARK 3 R VALUE (WORKING SET) : 0.291 REMARK 3 FREE R VALUE : 0.315 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 937 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1063 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 6247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.569 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.402 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.116 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.837 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.811 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6171 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5862 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8340 ; 1.228 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13664 ; 0.953 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 826 ;10.487 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 993 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6876 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1092 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1286 ; 0.156 ; 0.100 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6582 ; 0.167 ; 0.100 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3936 ; 0.079 ; 0.100 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.183 ; 0.100 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.181 ; 0.100 REMARK 3 SYMMETRY VDW OTHERS (A): 122 ; 0.172 ; 0.100 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.121 ; 0.100 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4069 ; 0.124 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6508 ; 0.223 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2102 ; 0.495 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1832 ; 0.732 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 250 2 REMARK 3 1 B 4 B 250 2 REMARK 3 2 A 251 A 417 2 REMARK 3 2 B 251 B 417 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 5976 ; 0.06 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 5976 ; 0.03 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES WITH DISORDERED SIDECHAINS REMARK 3 (BOTH CHAINS A AND B): K17,K34,K62,E95,R103,E223,E226,H239, REMARK 3 E244,H316,K318,Y380,K393. UNACCOUNTED DENSITY (BOTH CHAINS A REMARK 3 AND B): NEXT TO N126,D189 MODELLED AS HOH1,HOH2,HOH3,HOH4. REMARK 3 NEXT TO N326,D351,N407. REMARK 4 REMARK 4 1O0U COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-05-01) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-2002. REMARK 100 THE RCSB ID CODE IS RCSB001661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-2002 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.904695, 0.97913 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.20500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD SE-MET REMARK 200 SOFTWARE USED: CCP4, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65 % (+/-)-2-METHYL-2,4- REMARK 280 PENTANEDIOL; 0.1 M BICINE, PH 9.0, TEMPERATURE 293K, PH 9.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.82250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.84350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.37400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.84350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.82250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.37400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ASP A 3 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ASP B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 NZ LYS A 181 OE2 GLU A 244 1.89 REMARK 500 NZ LYS B 181 OE2 GLU B 244 1.99 REMARK 500 CE LYS A 181 OE2 GLU A 244 2.07 REMARK 500 CE LYS B 181 OE2 GLU B 244 2.12 REMARK 500 OD2 ASP A 378 NE2 GLN A 381 2.13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 17 CA LYS A 17 CB -0.076 REMARK 500 MET A 52 SD MET A 52 CE -0.085 REMARK 500 ASP A 81 CA ASP A 81 C 0.062 REMARK 500 GLY A 266 N GLY A 266 CA 0.063 REMARK 500 MET A 291 SD MET A 291 CE -0.089 REMARK 500 MET B 52 SD MET B 52 CE -0.082 REMARK 500 PHE B 83 N PHE B 83 CA 0.093 REMARK 500 ASP B 82 C PHE B 83 N 0.138 REMARK 500 ILE B 158 CA ILE B 158 CB 0.064 REMARK 500 MET B 291 SD MET B 291 CE -0.063 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 17 CB - CA - C ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP A 82 N - CA - CB ANGL. DEV. =-12.7 DEGREES REMARK 500 ASP A 82 N - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 ASP A 82 C - N - CA ANGL. DEV. = 23.1 DEGREES REMARK 500 HIS A 239 CB - CA - C ANGL. DEV. =-15.8 DEGREES REMARK 500 GLU A 244 CB - CA - C ANGL. DEV. =-17.8 DEGREES REMARK 500 PHE A 267 N - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 LYS A 318 N - CA - C ANGL. DEV. = -9.9 DEGREES REMARK 500 ILE B 80 N - CA - C ANGL. DEV. =-10.4 DEGREES REMARK 500 ASP B 82 C - N - CA ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP B 82 CA - C - N ANGL. DEV. =-18.3 DEGREES REMARK 500 ASP B 82 O - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 PHE B 83 C - N - CA ANGL. DEV. = 24.8 DEGREES REMARK 500 GLU B 244 CB - CA - C ANGL. DEV. =-19.1 DEGREES REMARK 500 HIS B 316 CB - CA - C ANGL. DEV. =-13.6 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 170 GLY A 171 143.96 REMARK 500 GLY A 171 ARG A 172 -149.40 REMARK 500 LEU A 276 ASP A 277 -148.42 REMARK 500 LYS A 302 LYS A 303 -141.58 REMARK 500 LYS A 303 PRO A 304 124.73 REMARK 500 GLY A 339 ILE A 340 -139.70 REMARK 500 THR A 357 ASP A 358 141.56 REMARK 500 ILE A 363 VAL A 364 -147.53 REMARK 500 ASN A 407 VAL A 408 145.62 REMARK 500 GLY B 170 GLY B 171 144.14 REMARK 500 GLY B 171 ARG B 172 -148.16 REMARK 500 GLY B 266 PHE B 267 -148.27 REMARK 500 LEU B 276 ASP B 277 -148.46 REMARK 500 LYS B 302 LYS B 303 -142.08 REMARK 500 LYS B 303 PRO B 304 123.57 REMARK 500 GLY B 339 ILE B 340 -140.22 REMARK 500 THR B 357 ASP B 358 142.59 REMARK 500 ILE B 363 VAL B 364 -147.12 REMARK 500 ASN B 407 VAL B 408 146.49 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: SA REMARK 800 SITE_DESCRIPTION: ACTIVE SITE AT N326,D351,N407 AND S126,D189 REMARK 800 OF CHAIN A. REMARK 800 SITE_IDENTIFIER: SB REMARK 800 SITE_DESCRIPTION: ACTIVE SITE AT N326,D351,N407 AND S126,D189 REMARK 800 OF CHAIN B. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TM1585 RELATED DB: TIGR REMARK 900 RELATED ID: 283442 RELATED DB: TARGETDB DBREF 1O0U A 1 417 UNP Q9X1S1 Q9X1S1_THEMA 1 417 DBREF 1O0U B 1 417 UNP Q9X1S1 Q9X1S1_THEMA 1 417 SEQADV 1O0U MET A -11 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U GLY A -10 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U SER A -9 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U ASP A -8 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U LYS A -7 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U ILE A -6 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U HIS A -5 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS A -4 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS A -3 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS A -2 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS A -1 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS A 0 UNP Q9X1S1 HIS TAG SEQADV 1O0U MET B -11 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U GLY B -10 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U SER B -9 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U ASP B -8 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U LYS B -7 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U ILE B -6 UNP Q9X1S1 LEADER SEQUENCE SEQADV 1O0U HIS B -5 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS B -4 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS B -3 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS B -2 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS B -1 UNP Q9X1S1 HIS TAG SEQADV 1O0U HIS B 0 UNP Q9X1S1 HIS TAG SEQRES 1 A 429 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 429 PHE ASP PRO GLU SER LEU LYS LYS LEU ALA ILE GLU ILE SEQRES 3 A 429 VAL LYS LYS SER ILE GLU ALA VAL PHE PRO ASP ARG ALA SEQRES 4 A 429 VAL LYS GLU THR LEU PRO LYS LEU ASN LEU ASP ARG VAL SEQRES 5 A 429 ILE LEU VAL ALA VAL GLY LYS ALA ALA TRP ARG MET ALA SEQRES 6 A 429 LYS ALA ALA TYR GLU VAL LEU GLY LYS LYS ILE ARG LYS SEQRES 7 A 429 GLY VAL VAL VAL THR LYS TYR GLY HIS SER GLU GLY PRO SEQRES 8 A 429 ILE ASP ASP PHE GLU ILE TYR GLU ALA GLY HIS PRO VAL SEQRES 9 A 429 PRO ASP GLU ASN THR ILE LYS THR THR ARG ARG VAL LEU SEQRES 10 A 429 GLU LEU VAL ASP GLN LEU ASN GLU ASN ASP THR VAL LEU SEQRES 11 A 429 PHE LEU LEU SER GLY GLY GLY SER SER LEU PHE GLU LEU SEQRES 12 A 429 PRO LEU GLU GLY VAL SER LEU GLU GLU ILE GLN LYS LEU SEQRES 13 A 429 THR SER ALA LEU LEU LYS SER GLY ALA SER ILE GLU GLU SEQRES 14 A 429 ILE ASN THR VAL ARG LYS HIS LEU SER GLN VAL LYS GLY SEQRES 15 A 429 GLY ARG PHE ALA GLU ARG VAL PHE PRO ALA LYS VAL VAL SEQRES 16 A 429 ALA LEU VAL LEU SER ASP VAL LEU GLY ASP ARG LEU ASP SEQRES 17 A 429 VAL ILE ALA SER GLY PRO ALA TRP PRO ASP SER SER THR SEQRES 18 A 429 SER GLU ASP ALA LEU LYS VAL LEU GLU LYS TYR GLY ILE SEQRES 19 A 429 GLU THR SER GLU SER VAL LYS ARG ALA ILE LEU GLN GLU SEQRES 20 A 429 THR PRO LYS HIS LEU SER ASN VAL GLU ILE HIS LEU ILE SEQRES 21 A 429 GLY ASN VAL GLN LYS VAL CYS ASP GLU ALA LYS SER LEU SEQRES 22 A 429 ALA LYS GLU LYS GLY PHE ASN ALA GLU ILE ILE THR THR SEQRES 23 A 429 SER LEU ASP CYS GLU ALA ARG GLU ALA GLY ARG PHE ILE SEQRES 24 A 429 ALA SER ILE MET LYS GLU VAL LYS PHE LYS ASP ARG PRO SEQRES 25 A 429 LEU LYS LYS PRO ALA ALA LEU ILE PHE GLY GLY GLU THR SEQRES 26 A 429 VAL VAL HIS VAL LYS GLY ASN GLY ILE GLY GLY ARG ASN SEQRES 27 A 429 GLN GLU LEU ALA LEU SER ALA ALA ILE ALA LEU GLU GLY SEQRES 28 A 429 ILE GLU GLY VAL ILE LEU CYS SER ALA GLY THR ASP GLY SEQRES 29 A 429 THR ASP GLY PRO THR ASP ALA ALA GLY GLY ILE VAL ASP SEQRES 30 A 429 GLY SER THR ALA LYS THR LEU LYS ALA MET GLY GLU ASP SEQRES 31 A 429 PRO TYR GLN TYR LEU LYS ASN ASN ASP SER TYR ASN ALA SEQRES 32 A 429 LEU LYS LYS SER GLY ALA LEU LEU ILE THR GLY PRO THR SEQRES 33 A 429 GLY THR ASN VAL ASN ASP LEU ILE ILE GLY LEU ILE VAL SEQRES 1 B 429 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 429 PHE ASP PRO GLU SER LEU LYS LYS LEU ALA ILE GLU ILE SEQRES 3 B 429 VAL LYS LYS SER ILE GLU ALA VAL PHE PRO ASP ARG ALA SEQRES 4 B 429 VAL LYS GLU THR LEU PRO LYS LEU ASN LEU ASP ARG VAL SEQRES 5 B 429 ILE LEU VAL ALA VAL GLY LYS ALA ALA TRP ARG MET ALA SEQRES 6 B 429 LYS ALA ALA TYR GLU VAL LEU GLY LYS LYS ILE ARG LYS SEQRES 7 B 429 GLY VAL VAL VAL THR LYS TYR GLY HIS SER GLU GLY PRO SEQRES 8 B 429 ILE ASP ASP PHE GLU ILE TYR GLU ALA GLY HIS PRO VAL SEQRES 9 B 429 PRO ASP GLU ASN THR ILE LYS THR THR ARG ARG VAL LEU SEQRES 10 B 429 GLU LEU VAL ASP GLN LEU ASN GLU ASN ASP THR VAL LEU SEQRES 11 B 429 PHE LEU LEU SER GLY GLY GLY SER SER LEU PHE GLU LEU SEQRES 12 B 429 PRO LEU GLU GLY VAL SER LEU GLU GLU ILE GLN LYS LEU SEQRES 13 B 429 THR SER ALA LEU LEU LYS SER GLY ALA SER ILE GLU GLU SEQRES 14 B 429 ILE ASN THR VAL ARG LYS HIS LEU SER GLN VAL LYS GLY SEQRES 15 B 429 GLY ARG PHE ALA GLU ARG VAL PHE PRO ALA LYS VAL VAL SEQRES 16 B 429 ALA LEU VAL LEU SER ASP VAL LEU GLY ASP ARG LEU ASP SEQRES 17 B 429 VAL ILE ALA SER GLY PRO ALA TRP PRO ASP SER SER THR SEQRES 18 B 429 SER GLU ASP ALA LEU LYS VAL LEU GLU LYS TYR GLY ILE SEQRES 19 B 429 GLU THR SER GLU SER VAL LYS ARG ALA ILE LEU GLN GLU SEQRES 20 B 429 THR PRO LYS HIS LEU SER ASN VAL GLU ILE HIS LEU ILE SEQRES 21 B 429 GLY ASN VAL GLN LYS VAL CYS ASP GLU ALA LYS SER LEU SEQRES 22 B 429 ALA LYS GLU LYS GLY PHE ASN ALA GLU ILE ILE THR THR SEQRES 23 B 429 SER LEU ASP CYS GLU ALA ARG GLU ALA GLY ARG PHE ILE SEQRES 24 B 429 ALA SER ILE MET LYS GLU VAL LYS PHE LYS ASP ARG PRO SEQRES 25 B 429 LEU LYS LYS PRO ALA ALA LEU ILE PHE GLY GLY GLU THR SEQRES 26 B 429 VAL VAL HIS VAL LYS GLY ASN GLY ILE GLY GLY ARG ASN SEQRES 27 B 429 GLN GLU LEU ALA LEU SER ALA ALA ILE ALA LEU GLU GLY SEQRES 28 B 429 ILE GLU GLY VAL ILE LEU CYS SER ALA GLY THR ASP GLY SEQRES 29 B 429 THR ASP GLY PRO THR ASP ALA ALA GLY GLY ILE VAL ASP SEQRES 30 B 429 GLY SER THR ALA LYS THR LEU LYS ALA MET GLY GLU ASP SEQRES 31 B 429 PRO TYR GLN TYR LEU LYS ASN ASN ASP SER TYR ASN ALA SEQRES 32 B 429 LEU LYS LYS SER GLY ALA LEU LEU ILE THR GLY PRO THR SEQRES 33 B 429 GLY THR ASN VAL ASN ASP LEU ILE ILE GLY LEU ILE VAL FORMUL 3 HOH *11(H2 O) HELIX 1 1 PRO A 4 ALA A 21 1 18 HELIX 2 2 PHE A 23 GLU A 30 1 8 HELIX 3 3 THR A 31 ASN A 36 1 6 HELIX 4 4 ALA A 48 LEU A 60 1 13 HELIX 5 5 ASP A 94 LEU A 107 1 14 HELIX 6 6 SER A 137 SER A 151 1 15 HELIX 7 7 SER A 154 HIS A 164 1 11 HELIX 8 8 GLY A 171 PHE A 178 1 8 HELIX 9 9 VAL A 190 ARG A 194 5 5 HELIX 10 10 VAL A 197 GLY A 201 5 5 HELIX 11 11 THR A 209 GLY A 221 1 13 HELIX 12 12 SER A 225 LEU A 233 1 9 HELIX 13 13 ASN A 250 LYS A 265 1 16 HELIX 14 14 GLU A 279 ASP A 298 1 20 HELIX 15 15 GLY A 324 LEU A 337 1 14 HELIX 16 16 SER A 367 MET A 375 1 9 HELIX 17 17 ASP A 378 ASN A 385 1 8 HELIX 18 18 ASP A 387 SER A 395 1 9 HELIX 19 19 PRO B 4 ALA B 21 1 18 HELIX 20 20 PHE B 23 GLU B 30 1 8 HELIX 21 21 THR B 31 ASN B 36 1 6 HELIX 22 22 ALA B 48 LEU B 60 1 13 HELIX 23 23 ASP B 94 LEU B 107 1 14 HELIX 24 24 SER B 137 SER B 151 1 15 HELIX 25 25 SER B 154 HIS B 164 1 11 HELIX 26 26 GLY B 171 PHE B 178 1 8 HELIX 27 27 VAL B 190 ARG B 194 5 5 HELIX 28 28 VAL B 197 GLY B 201 5 5 HELIX 29 29 THR B 209 GLY B 221 1 13 HELIX 30 30 SER B 225 LEU B 233 1 9 HELIX 31 31 ASN B 250 LYS B 265 1 16 HELIX 32 32 GLU B 279 ASP B 298 1 20 HELIX 33 33 GLY B 324 LEU B 337 1 14 HELIX 34 34 SER B 367 MET B 375 1 9 HELIX 35 35 ASP B 378 ASN B 385 1 8 HELIX 36 36 ASP B 387 SER B 395 1 9 SHEET 1 A 6 GLU A 84 GLU A 87 0 SHEET 2 A 6 ILE A 64 THR A 71 1 N VAL A 69 O TYR A 86 SHEET 3 A 6 VAL A 40 VAL A 45 1 N VAL A 40 O ARG A 65 SHEET 4 A 6 THR A 116 LEU A 120 1 O THR A 116 N ILE A 41 SHEET 5 A 6 LYS A 181 LEU A 187 1 O VAL A 183 N VAL A 117 SHEET 6 A 6 VAL A 243 GLY A 249 1 O HIS A 246 N VAL A 186 SHEET 1 B 6 ALA A 269 LEU A 276 0 SHEET 2 B 6 ALA A 305 GLY A 311 1 O GLY A 310 N LEU A 276 SHEET 3 B 6 ASP A 410 ILE A 416 -1 O ILE A 412 N PHE A 309 SHEET 4 B 6 VAL A 343 GLY A 349 -1 N ALA A 348 O LEU A 411 SHEET 5 B 6 GLY A 361 ASP A 365 -1 O VAL A 364 N LEU A 345 SHEET 6 B 6 LEU A 398 LEU A 399 -1 O LEU A 399 N GLY A 361 SHEET 1 C 6 GLU B 84 GLU B 87 0 SHEET 2 C 6 ILE B 64 THR B 71 1 N VAL B 69 O TYR B 86 SHEET 3 C 6 VAL B 40 VAL B 45 1 N VAL B 40 O ARG B 65 SHEET 4 C 6 THR B 116 LEU B 120 1 O THR B 116 N ILE B 41 SHEET 5 C 6 LYS B 181 LEU B 187 1 O VAL B 183 N VAL B 117 SHEET 6 C 6 VAL B 243 GLY B 249 1 O HIS B 246 N VAL B 186 SHEET 1 D 6 ALA B 269 LEU B 276 0 SHEET 2 D 6 ALA B 305 GLY B 311 1 O GLY B 310 N LEU B 276 SHEET 3 D 6 ASP B 410 ILE B 416 -1 O ILE B 412 N PHE B 309 SHEET 4 D 6 VAL B 343 GLY B 349 -1 N ILE B 344 O LEU B 415 SHEET 5 D 6 GLY B 361 ASP B 365 -1 O VAL B 364 N LEU B 345 SHEET 6 D 6 LEU B 398 LEU B 399 -1 O LEU B 399 N GLY B 361 CISPEP 1 HIS A 90 PRO A 91 0 17.42 CISPEP 2 PHE A 178 PRO A 179 0 8.40 CISPEP 3 ARG A 299 PRO A 300 0 7.84 CISPEP 4 HIS B 90 PRO B 91 0 17.91 CISPEP 5 PHE B 178 PRO B 179 0 8.23 CISPEP 6 ARG B 299 PRO B 300 0 8.32 SITE 1 SA 5 ASN A 326 ASP A 351 ASN A 407 SER A 126 SITE 2 SA 5 ASP A 189 SITE 1 SB 5 ASN B 326 ASP B 351 ASN B 407 SER B 126 SITE 2 SB 5 ASP B 189 CRYST1 61.645 84.748 171.687 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016222 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005825 0.00000