data_1O0Z # _entry.id 1O0Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1O0Z RCSB RCSB001666 WWPDB D_1000001666 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.pdb_id 1O53 _pdbx_database_PDB_obs_spr.replace_pdb_id 1O0Z _pdbx_database_PDB_obs_spr.date 2003-08-19 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1GGR 'HPr-IIA complex' unspecified PDB 2F3G 'x-ray structure of IIA' unspecified # _pdbx_database_status.entry_id 1O0Z _pdbx_database_status.status_code OBS _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2002-10-02 _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, G.' 1 'Keifer, P.A.' 2 'Peterkofsky, A.' 3 # _citation.id primary _citation.title ;Solution structure of the N-terminal amphitropic domain of Escherichia coli glucose-specific enzyme IIA in membrane-mimetic micelles ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 12 _citation.page_first 1087 _citation.page_last 1096 _citation.year 2003 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_DOI 10.1110/ps.0301503 _citation.pdbx_database_id_PubMed ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, G.' 1 primary 'Keifer, P.A.' 2 primary 'Peterkofsky, A.' 3 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'PTS system, glucose-specific IIA component' _entity.formula_weight 1696.983 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.7.1.69 _entity.pdbx_mutation ? _entity.pdbx_fragment 'N-terminal membrane anchor, residues 1-15 of enzyme IIA(Glucose)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EIIA-GLC, Glucose-permease IIA component, Phosphotransferase enzyme II, A component, EIII-GLC' # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 PHE n 1 4 ASP n 1 5 LYS n 1 6 LEU n 1 7 LYS n 1 8 SER n 1 9 LEU n 1 10 VAL n 1 11 SER n 1 12 ASP n 1 13 ASP n 1 14 LYS n 1 15 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;The peptide was synthesized using the solid-phase method and purified by HPLC. The sequence of the peptide is naturally found in Escherichia coli (bacteria). ; # _struct_ref.id 1 _struct_ref.db_name SWS _struct_ref.db_code PTGA_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GLFDKLKSLVSDDKK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession P08837 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O0Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 15 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08837 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 15 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type '2D NOESY, TOCSY, DQF-COSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 'pH 5.4' _pdbx_nmr_exptl_sample_conditions.ionic_strength 'no buffer' _pdbx_nmr_exptl_sample_conditions.pressure_units ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'natural abundance synthetic peptide 5 mM peptide and 50 mM dihexanoyl phosphatidylglycerol' _pdbx_nmr_sample_details.solvent_system '90% H2O and 10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structures are based on 146 distances derived from the NOESY spectra. No dihedral angles or hydrogen-bond restraints were applied. ; _pdbx_nmr_refine.entry_id 1O0Z _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear NMR techniques.' _pdbx_nmr_details.entry_id 1O0Z # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria ;No NOE violations greater than 0.20 A; rms difference for bond deviations from ideality less than 0.01 A; rms difference for angle deviations from ideality less than 2 degrees; Structures with the lowerest energies in the ensemble; Structures most resemble the average structure. ; _pdbx_nmr_ensemble.entry_id 1O0Z _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'most resemble the average structure.' _pdbx_nmr_representative.entry_id 1O0Z # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe/nmrDraw 2.1 'data processing' 'Delaglio, F.' 1 PIPP 1.0 'noe picking' 'Garrett, D.' 2 XPLOR-NIH 1.06 'structural calculations' 'Schwieters, C.D., Kuszewski, J., Tjandra, N, Clore, G.M.' 3 MOLMOL 2K.1 'structural analysis and viewing' 'Koradi, R.' 4 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 1O0Z _exptl.crystals_number ? # _struct.entry_id 1O0Z _struct.title 'Solution structure of the N-terminal membrane anchor of E. coli enzyme IIA(Glucose)' _struct.pdbx_descriptor 'PTS system, glucose-specific IIA component (E.C.2.7.1.69)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'amphipathic helix, TRANSFERASE' _struct_keywords.entry_id 1O0Z _struct_keywords.pdbx_keywords TRANSFERASE # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 11 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 2 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 11 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 1O0Z _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LYS 15 15 15 LYS LYS A . n # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-05-06 2 'Structure model' 1 1 2003-08-19 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 2H A GLY 1 ? ? H A LEU 2 ? ? 1.32 2 1 O A PHE 3 ? ? H A LYS 7 ? ? 1.45 3 2 O A PHE 3 ? ? H A LYS 7 ? ? 1.49 4 3 O A PHE 3 ? ? H A LYS 7 ? ? 1.45 5 4 O A LEU 2 ? ? H A LYS 5 ? ? 1.45 6 4 O A PHE 3 ? ? H A LYS 7 ? ? 1.46 7 4 O A PHE 3 ? ? H A LEU 6 ? ? 1.56 8 5 O A PHE 3 ? ? H A LYS 7 ? ? 1.45 9 5 O A LEU 2 ? ? H A LYS 5 ? ? 1.47 10 5 O A PHE 3 ? ? H A LEU 6 ? ? 1.57 11 6 O A PHE 3 ? ? H A LYS 7 ? ? 1.43 12 7 O A PHE 3 ? ? H A LYS 7 ? ? 1.48 13 8 O A PHE 3 ? ? H A LYS 7 ? ? 1.42 14 9 O A PHE 3 ? ? H A LYS 7 ? ? 1.41 15 10 O A PHE 3 ? ? H A LYS 7 ? ? 1.41 16 11 O A PHE 3 ? ? H A LYS 7 ? ? 1.59 17 12 O A PHE 3 ? ? H A LYS 7 ? ? 1.32 18 13 O A PHE 3 ? ? H A LYS 7 ? ? 1.39 19 13 OD1 A ASP 13 ? ? H A LYS 14 ? ? 1.50 20 14 O A PHE 3 ? ? H A LYS 7 ? ? 1.48 21 15 O A PHE 3 ? ? H A LYS 7 ? ? 1.49 22 16 O A PHE 3 ? ? H A LYS 7 ? ? 1.50 23 17 O A PHE 3 ? ? H A LYS 7 ? ? 1.36 24 18 O A PHE 3 ? ? H A LYS 7 ? ? 1.42 25 19 O A PHE 3 ? ? H A LYS 7 ? ? 1.41 26 20 O A PHE 3 ? ? H A LYS 7 ? ? 1.33 27 20 O A LEU 2 ? ? H A LYS 5 ? ? 1.41 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 2 ? ? -154.99 -86.51 2 1 ASP A 12 ? ? -174.25 -92.65 3 1 ASP A 13 ? ? 60.39 -2.01 4 1 LYS A 14 ? ? -172.69 101.33 5 2 LEU A 2 ? ? -75.73 -96.87 6 2 ASP A 13 ? ? -78.29 34.91 7 2 LYS A 14 ? ? 37.20 -107.30 8 3 LEU A 2 ? ? -159.80 -78.94 9 3 ASP A 12 ? ? -153.72 71.31 10 3 LYS A 14 ? ? 31.01 90.52 11 4 LEU A 2 ? ? -137.99 -97.68 12 4 PHE A 3 ? ? -21.46 -47.01 13 4 ASP A 4 ? ? -39.85 -36.85 14 4 ASP A 12 ? ? -97.35 -92.12 15 4 LYS A 14 ? ? 58.59 148.33 16 5 LEU A 2 ? ? -137.31 -98.11 17 5 PHE A 3 ? ? -20.67 -47.43 18 5 SER A 11 ? ? -89.94 31.27 19 5 ASP A 13 ? ? -95.39 -103.91 20 6 LEU A 2 ? ? -88.86 -88.32 21 6 SER A 11 ? ? -89.37 48.61 22 6 ASP A 12 ? ? -172.27 20.92 23 7 LEU A 2 ? ? -164.12 -87.81 24 7 SER A 11 ? ? -66.17 3.97 25 7 ASP A 13 ? ? -78.97 46.09 26 8 LEU A 2 ? ? -109.48 -90.36 27 8 LYS A 14 ? ? 57.88 -78.38 28 9 LEU A 2 ? ? -172.32 -85.90 29 9 ASP A 12 ? ? -158.57 16.25 30 10 LEU A 2 ? ? -82.66 -86.00 31 10 LYS A 14 ? ? -102.99 52.97 32 11 LEU A 2 ? ? -82.42 -84.92 33 12 LEU A 2 ? ? -162.20 -87.07 34 12 SER A 11 ? ? -82.94 40.86 35 12 ASP A 12 ? ? -146.22 -5.54 36 12 ASP A 13 ? ? -167.22 87.32 37 12 LYS A 14 ? ? -48.99 167.26 38 13 LEU A 2 ? ? -141.16 -91.45 39 13 SER A 11 ? ? -90.53 30.93 40 13 ASP A 12 ? ? -161.63 33.17 41 13 ASP A 13 ? ? -56.85 -95.50 42 14 LEU A 2 ? ? -90.79 -83.69 43 14 SER A 11 ? ? -67.34 4.98 44 15 LEU A 2 ? ? -95.38 -84.56 45 15 ASP A 12 ? ? -170.82 24.85 46 15 ASP A 13 ? ? -157.83 -36.42 47 16 LEU A 2 ? ? -92.63 -87.45 48 16 SER A 11 ? ? -81.43 30.01 49 16 ASP A 12 ? ? -157.10 -20.48 50 16 ASP A 13 ? ? -176.73 99.05 51 17 LEU A 2 ? ? -160.35 -88.01 52 17 SER A 11 ? ? -107.74 56.00 53 17 ASP A 12 ? ? -159.16 -26.98 54 17 LYS A 14 ? ? 45.66 25.67 55 18 LEU A 2 ? ? -105.37 -86.31 56 18 SER A 11 ? ? -73.18 45.59 57 18 ASP A 12 ? ? -159.95 -2.48 58 18 ASP A 13 ? ? -72.22 -99.36 59 18 LYS A 14 ? ? -178.88 143.29 60 19 LEU A 2 ? ? -81.79 -88.13 61 19 SER A 11 ? ? -105.97 50.82 62 19 ASP A 12 ? ? -163.62 35.83 63 20 LEU A 2 ? ? -85.42 -87.22 64 20 SER A 11 ? ? -73.70 36.15 65 20 ASP A 12 ? ? -156.14 -43.59 66 20 ASP A 13 ? ? 47.59 87.76 67 20 LYS A 14 ? ? -146.34 -114.25 #