data_1O13 # _entry.id 1O13 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O13 pdb_00001o13 10.2210/pdb1o13/pdb RCSB RCSB001670 ? ? WWPDB D_1000001670 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 283669 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1O13 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2002-10-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of probable NifB protein that is involved in FeMo-Co biosynthesis TM1816 from Thermotoga maritima at 1.83 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.length_a 32.57 _cell.length_b 39.84 _cell.length_c 85.77 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1O13 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 1O13 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'probable NifB protein' 15250.700 1 ? ? ? 'involved in FeMo-Co biosynthesis' 2 water nat water 18.015 96 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)IIAIPVSENRGKDSPISEHFGRAPYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFV KEKGAELVIVRGIGRRAIAAFEA(MSE)GVKVIKGASGTVEEVVNQYLSGQLKDSDYEVHDHHHHEHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMIIAIPVSENRGKDSPISEHFGRAPYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFVKEKGAELV IVRGIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQLKDSDYEVHDHHHHEHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 283669 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 ILE n 1 15 ILE n 1 16 ALA n 1 17 ILE n 1 18 PRO n 1 19 VAL n 1 20 SER n 1 21 GLU n 1 22 ASN n 1 23 ARG n 1 24 GLY n 1 25 LYS n 1 26 ASP n 1 27 SER n 1 28 PRO n 1 29 ILE n 1 30 SER n 1 31 GLU n 1 32 HIS n 1 33 PHE n 1 34 GLY n 1 35 ARG n 1 36 ALA n 1 37 PRO n 1 38 TYR n 1 39 PHE n 1 40 ALA n 1 41 PHE n 1 42 VAL n 1 43 LYS n 1 44 VAL n 1 45 LYS n 1 46 ASN n 1 47 ASN n 1 48 ALA n 1 49 ILE n 1 50 ALA n 1 51 ASP n 1 52 ILE n 1 53 SER n 1 54 VAL n 1 55 GLU n 1 56 GLU n 1 57 ASN n 1 58 PRO n 1 59 LEU n 1 60 ALA n 1 61 GLN n 1 62 ASP n 1 63 HIS n 1 64 VAL n 1 65 HIS n 1 66 GLY n 1 67 ALA n 1 68 VAL n 1 69 PRO n 1 70 ASN n 1 71 PHE n 1 72 VAL n 1 73 LYS n 1 74 GLU n 1 75 LYS n 1 76 GLY n 1 77 ALA n 1 78 GLU n 1 79 LEU n 1 80 VAL n 1 81 ILE n 1 82 VAL n 1 83 ARG n 1 84 GLY n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ARG n 1 89 ALA n 1 90 ILE n 1 91 ALA n 1 92 ALA n 1 93 PHE n 1 94 GLU n 1 95 ALA n 1 96 MSE n 1 97 GLY n 1 98 VAL n 1 99 LYS n 1 100 VAL n 1 101 ILE n 1 102 LYS n 1 103 GLY n 1 104 ALA n 1 105 SER n 1 106 GLY n 1 107 THR n 1 108 VAL n 1 109 GLU n 1 110 GLU n 1 111 VAL n 1 112 VAL n 1 113 ASN n 1 114 GLN n 1 115 TYR n 1 116 LEU n 1 117 SER n 1 118 GLY n 1 119 GLN n 1 120 LEU n 1 121 LYS n 1 122 ASP n 1 123 SER n 1 124 ASP n 1 125 TYR n 1 126 GLU n 1 127 VAL n 1 128 HIS n 1 129 ASP n 1 130 HIS n 1 131 HIS n 1 132 HIS n 1 133 HIS n 1 134 GLU n 1 135 HIS n 1 136 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM1816 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code Q9X2D6_THEMA _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q9X2D6 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MIIAIPVSENRGKDSPISEHFGRAPYFAFVKVKNNAIADISVEENPLAQDHVHGAVPNFVKEKGAELVIVRGIGRRAIAA FEAMGVKVIKGASGTVEEVVNQYLSGQLKDSDYEVHDHHHHEHH ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O13 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 136 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X2D6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1O13 MSE A 1 ? UNP Q9X2D6 ? ? 'expression tag' -11 1 1 1O13 GLY A 2 ? UNP Q9X2D6 ? ? 'expression tag' -10 2 1 1O13 SER A 3 ? UNP Q9X2D6 ? ? 'expression tag' -9 3 1 1O13 ASP A 4 ? UNP Q9X2D6 ? ? 'expression tag' -8 4 1 1O13 LYS A 5 ? UNP Q9X2D6 ? ? 'expression tag' -7 5 1 1O13 ILE A 6 ? UNP Q9X2D6 ? ? 'expression tag' -6 6 1 1O13 HIS A 7 ? UNP Q9X2D6 ? ? 'expression tag' -5 7 1 1O13 HIS A 8 ? UNP Q9X2D6 ? ? 'expression tag' -4 8 1 1O13 HIS A 9 ? UNP Q9X2D6 ? ? 'expression tag' -3 9 1 1O13 HIS A 10 ? UNP Q9X2D6 ? ? 'expression tag' -2 10 1 1O13 HIS A 11 ? UNP Q9X2D6 ? ? 'expression tag' -1 11 1 1O13 HIS A 12 ? UNP Q9X2D6 ? ? 'expression tag' 0 12 1 1O13 MSE A 13 ? UNP Q9X2D6 MET 1 'modified residue' 1 13 1 1O13 MSE A 96 ? UNP Q9X2D6 MET 84 'modified residue' 84 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1O13 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 43.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.20 _exptl_crystal_grow.pdbx_details '0.1M phosphate-citrate 40%(v/v) PEG-600, pH 4.2, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 4.20' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2002-07-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL MONOCHROMATOR' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97903 1.0 2 0.91837 1.0 3 0.97874 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97903, 0.91837, 0.97874' # _reflns.entry_id 1O13 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.871 _reflns.d_resolution_high 1.830 _reflns.number_obs 10393 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_netI_over_sigmaI 22.3000 _reflns.B_iso_Wilson_estimate 24.76 _reflns.pdbx_redundancy 14.900 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.83 _reflns_shell.d_res_low 1.88 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.945 _reflns_shell.meanI_over_sigI_obs 2.300 _reflns_shell.pdbx_redundancy 7.40 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1O13 _refine.ls_number_reflns_obs 10351 _refine.ls_number_reflns_all 10351 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.87 _refine.ls_d_res_high 1.83 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 498 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 26.90 _refine.aniso_B[1][1] -6.92800 _refine.aniso_B[2][2] -2.38300 _refine.aniso_B[3][3] 9.31200 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BULK SOLVENT CORRECTION' _refine.solvent_model_param_ksol 243.35 _refine.solvent_model_param_bsol 0.46 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THERE WAS NO DENSITY FOR THE FINAL 17 RESIDUES OF THE GENE SEQUENCE. WATERS WERE ADDED TO 3.0+ SIGMA PEAKS IN MFO-DFC MAPS IN APPROPRIATE H-BONDING POSITIONS USING THE CNS WATER_PICK AND WATER_DELETE SCRIPTS ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1O13 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 43.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 808 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 904 _refine_hist.d_res_high 1.83 _refine_hist.d_res_low 42.87 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.56 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.454 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.102 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.055 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.914 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.d_res_high 1.83 _refine_ls_shell.d_res_low 1.90 _refine_ls_shell.number_reflns_R_work 1053 _refine_ls_shell.R_factor_R_work 0.287 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3684 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.6 _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1O13 _struct.title 'Crystal structure of a putative dinitrogenase iron-molybdenum cofactor (tm1816) from thermotoga maritima at 1.83 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Ribonuclease h-like motif fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, biosynthetic protein ; _struct_keywords.entry_id 1O13 _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 23 ? SER A 27 ? ARG A 11 SER A 15 5 ? 5 HELX_P HELX_P2 2 PRO A 58 ? GLN A 61 ? PRO A 46 GLN A 49 5 ? 4 HELX_P HELX_P3 3 ALA A 67 ? LYS A 75 ? ALA A 55 LYS A 63 1 ? 9 HELX_P HELX_P4 4 GLY A 86 ? MSE A 96 ? GLY A 74 MSE A 84 1 ? 11 HELX_P HELX_P5 5 THR A 107 ? SER A 117 ? THR A 95 SER A 105 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 13 C ? ? ? 1_555 A ILE 14 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A ALA 95 C ? ? ? 1_555 A MSE 96 N ? ? A ALA 83 A MSE 84 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? A MSE 96 C ? ? ? 1_555 A GLY 97 N ? ? A MSE 84 A GLY 85 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 48 ? GLU A 56 ? ALA A 36 GLU A 44 A 2 TYR A 38 ? LYS A 45 ? TYR A 26 LYS A 33 A 3 ILE A 14 ? VAL A 19 ? ILE A 2 VAL A 7 A 4 LEU A 79 ? ILE A 81 ? LEU A 67 ILE A 69 A 5 LYS A 99 ? ILE A 101 ? LYS A 87 ILE A 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 50 ? O ALA A 38 N LYS A 43 ? N LYS A 31 A 2 3 O VAL A 42 ? O VAL A 30 N ILE A 15 ? N ILE A 3 A 3 4 N ALA A 16 ? N ALA A 4 O LEU A 79 ? O LEU A 67 A 4 5 N VAL A 80 ? N VAL A 68 O ILE A 101 ? O ILE A 89 # _atom_sites.entry_id 1O13 _atom_sites.fract_transf_matrix[1][1] 0.030703 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025100 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011659 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 ? ? ? A . n A 1 11 HIS 11 -1 ? ? ? A . n A 1 12 HIS 12 0 ? ? ? A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 ILE 14 2 2 ILE ILE A . n A 1 15 ILE 15 3 3 ILE ILE A . n A 1 16 ALA 16 4 4 ALA ALA A . n A 1 17 ILE 17 5 5 ILE ILE A . n A 1 18 PRO 18 6 6 PRO PRO A . n A 1 19 VAL 19 7 7 VAL VAL A . n A 1 20 SER 20 8 8 SER SER A . n A 1 21 GLU 21 9 9 GLU GLU A . n A 1 22 ASN 22 10 10 ASN ASN A . n A 1 23 ARG 23 11 11 ARG ARG A . n A 1 24 GLY 24 12 12 GLY GLY A . n A 1 25 LYS 25 13 13 LYS LYS A . n A 1 26 ASP 26 14 14 ASP ASP A . n A 1 27 SER 27 15 15 SER SER A . n A 1 28 PRO 28 16 16 PRO PRO A . n A 1 29 ILE 29 17 17 ILE ILE A . n A 1 30 SER 30 18 18 SER SER A . n A 1 31 GLU 31 19 19 GLU GLU A . n A 1 32 HIS 32 20 20 HIS HIS A . n A 1 33 PHE 33 21 21 PHE PHE A . n A 1 34 GLY 34 22 22 GLY GLY A . n A 1 35 ARG 35 23 23 ARG ARG A . n A 1 36 ALA 36 24 24 ALA ALA A . n A 1 37 PRO 37 25 25 PRO PRO A . n A 1 38 TYR 38 26 26 TYR TYR A . n A 1 39 PHE 39 27 27 PHE PHE A . n A 1 40 ALA 40 28 28 ALA ALA A . n A 1 41 PHE 41 29 29 PHE PHE A . n A 1 42 VAL 42 30 30 VAL VAL A . n A 1 43 LYS 43 31 31 LYS LYS A . n A 1 44 VAL 44 32 32 VAL VAL A . n A 1 45 LYS 45 33 33 LYS LYS A . n A 1 46 ASN 46 34 34 ASN ASN A . n A 1 47 ASN 47 35 35 ASN ASN A . n A 1 48 ALA 48 36 36 ALA ALA A . n A 1 49 ILE 49 37 37 ILE ILE A . n A 1 50 ALA 50 38 38 ALA ALA A . n A 1 51 ASP 51 39 39 ASP ASP A . n A 1 52 ILE 52 40 40 ILE ILE A . n A 1 53 SER 53 41 41 SER SER A . n A 1 54 VAL 54 42 42 VAL VAL A . n A 1 55 GLU 55 43 43 GLU GLU A . n A 1 56 GLU 56 44 44 GLU GLU A . n A 1 57 ASN 57 45 45 ASN ASN A . n A 1 58 PRO 58 46 46 PRO PRO A . n A 1 59 LEU 59 47 47 LEU LEU A . n A 1 60 ALA 60 48 48 ALA ALA A . n A 1 61 GLN 61 49 49 GLN GLN A . n A 1 62 ASP 62 50 50 ASP ASP A . n A 1 63 HIS 63 51 51 HIS HIS A . n A 1 64 VAL 64 52 52 VAL VAL A . n A 1 65 HIS 65 53 53 HIS HIS A . n A 1 66 GLY 66 54 54 GLY GLY A . n A 1 67 ALA 67 55 55 ALA ALA A . n A 1 68 VAL 68 56 56 VAL VAL A . n A 1 69 PRO 69 57 57 PRO PRO A . n A 1 70 ASN 70 58 58 ASN ASN A . n A 1 71 PHE 71 59 59 PHE PHE A . n A 1 72 VAL 72 60 60 VAL VAL A . n A 1 73 LYS 73 61 61 LYS LYS A . n A 1 74 GLU 74 62 62 GLU GLU A . n A 1 75 LYS 75 63 63 LYS LYS A . n A 1 76 GLY 76 64 64 GLY GLY A . n A 1 77 ALA 77 65 65 ALA ALA A . n A 1 78 GLU 78 66 66 GLU GLU A . n A 1 79 LEU 79 67 67 LEU LEU A . n A 1 80 VAL 80 68 68 VAL VAL A . n A 1 81 ILE 81 69 69 ILE ILE A . n A 1 82 VAL 82 70 70 VAL VAL A . n A 1 83 ARG 83 71 71 ARG ARG A . n A 1 84 GLY 84 72 72 GLY GLY A . n A 1 85 ILE 85 73 73 ILE ILE A . n A 1 86 GLY 86 74 74 GLY GLY A . n A 1 87 ARG 87 75 75 ARG ARG A . n A 1 88 ARG 88 76 76 ARG ARG A . n A 1 89 ALA 89 77 77 ALA ALA A . n A 1 90 ILE 90 78 78 ILE ILE A . n A 1 91 ALA 91 79 79 ALA ALA A . n A 1 92 ALA 92 80 80 ALA ALA A . n A 1 93 PHE 93 81 81 PHE PHE A . n A 1 94 GLU 94 82 82 GLU GLU A . n A 1 95 ALA 95 83 83 ALA ALA A . n A 1 96 MSE 96 84 84 MSE MSE A . n A 1 97 GLY 97 85 85 GLY GLY A . n A 1 98 VAL 98 86 86 VAL VAL A . n A 1 99 LYS 99 87 87 LYS LYS A . n A 1 100 VAL 100 88 88 VAL VAL A . n A 1 101 ILE 101 89 89 ILE ILE A . n A 1 102 LYS 102 90 90 LYS LYS A . n A 1 103 GLY 103 91 91 GLY GLY A . n A 1 104 ALA 104 92 92 ALA ALA A . n A 1 105 SER 105 93 93 SER SER A . n A 1 106 GLY 106 94 94 GLY GLY A . n A 1 107 THR 107 95 95 THR THR A . n A 1 108 VAL 108 96 96 VAL VAL A . n A 1 109 GLU 109 97 97 GLU GLU A . n A 1 110 GLU 110 98 98 GLU GLU A . n A 1 111 VAL 111 99 99 VAL VAL A . n A 1 112 VAL 112 100 100 VAL VAL A . n A 1 113 ASN 113 101 101 ASN ASN A . n A 1 114 GLN 114 102 102 GLN GLN A . n A 1 115 TYR 115 103 103 TYR TYR A . n A 1 116 LEU 116 104 104 LEU LEU A . n A 1 117 SER 117 105 105 SER SER A . n A 1 118 GLY 118 106 106 GLY GLY A . n A 1 119 GLN 119 107 107 GLN GLN A . n A 1 120 LEU 120 108 ? ? ? A . n A 1 121 LYS 121 109 ? ? ? A . n A 1 122 ASP 122 110 ? ? ? A . n A 1 123 SER 123 111 ? ? ? A . n A 1 124 ASP 124 112 ? ? ? A . n A 1 125 TYR 125 113 ? ? ? A . n A 1 126 GLU 126 114 ? ? ? A . n A 1 127 VAL 127 115 ? ? ? A . n A 1 128 HIS 128 116 ? ? ? A . n A 1 129 ASP 129 117 ? ? ? A . n A 1 130 HIS 130 118 ? ? ? A . n A 1 131 HIS 131 119 ? ? ? A . n A 1 132 HIS 132 120 ? ? ? A . n A 1 133 HIS 133 121 ? ? ? A . n A 1 134 GLU 134 122 ? ? ? A . n A 1 135 HIS 135 123 ? ? ? A . n A 1 136 HIS 136 124 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 125 1 HOH HOH A . B 2 HOH 2 126 2 HOH HOH A . B 2 HOH 3 127 3 HOH HOH A . B 2 HOH 4 128 4 HOH HOH A . B 2 HOH 5 129 5 HOH HOH A . B 2 HOH 6 130 6 HOH HOH A . B 2 HOH 7 131 7 HOH HOH A . B 2 HOH 8 132 8 HOH HOH A . B 2 HOH 9 133 9 HOH HOH A . B 2 HOH 10 134 10 HOH HOH A . B 2 HOH 11 135 11 HOH HOH A . B 2 HOH 12 136 12 HOH HOH A . B 2 HOH 13 137 13 HOH HOH A . B 2 HOH 14 138 14 HOH HOH A . B 2 HOH 15 139 15 HOH HOH A . B 2 HOH 16 140 16 HOH HOH A . B 2 HOH 17 141 17 HOH HOH A . B 2 HOH 18 142 18 HOH HOH A . B 2 HOH 19 143 19 HOH HOH A . B 2 HOH 20 144 20 HOH HOH A . B 2 HOH 21 145 21 HOH HOH A . B 2 HOH 22 146 22 HOH HOH A . B 2 HOH 23 147 23 HOH HOH A . B 2 HOH 24 148 24 HOH HOH A . B 2 HOH 25 149 25 HOH HOH A . B 2 HOH 26 150 26 HOH HOH A . B 2 HOH 27 151 27 HOH HOH A . B 2 HOH 28 152 28 HOH HOH A . B 2 HOH 29 153 29 HOH HOH A . B 2 HOH 30 154 30 HOH HOH A . B 2 HOH 31 155 31 HOH HOH A . B 2 HOH 32 156 33 HOH HOH A . B 2 HOH 33 157 34 HOH HOH A . B 2 HOH 34 158 35 HOH HOH A . B 2 HOH 35 159 36 HOH HOH A . B 2 HOH 36 160 37 HOH HOH A . B 2 HOH 37 161 38 HOH HOH A . B 2 HOH 38 162 39 HOH HOH A . B 2 HOH 39 163 40 HOH HOH A . B 2 HOH 40 164 41 HOH HOH A . B 2 HOH 41 165 42 HOH HOH A . B 2 HOH 42 166 44 HOH HOH A . B 2 HOH 43 167 45 HOH HOH A . B 2 HOH 44 168 46 HOH HOH A . B 2 HOH 45 169 47 HOH HOH A . B 2 HOH 46 170 48 HOH HOH A . B 2 HOH 47 171 49 HOH HOH A . B 2 HOH 48 172 50 HOH HOH A . B 2 HOH 49 173 51 HOH HOH A . B 2 HOH 50 174 52 HOH HOH A . B 2 HOH 51 175 53 HOH HOH A . B 2 HOH 52 176 54 HOH HOH A . B 2 HOH 53 177 55 HOH HOH A . B 2 HOH 54 178 56 HOH HOH A . B 2 HOH 55 179 57 HOH HOH A . B 2 HOH 56 180 58 HOH HOH A . B 2 HOH 57 181 59 HOH HOH A . B 2 HOH 58 182 60 HOH HOH A . B 2 HOH 59 183 61 HOH HOH A . B 2 HOH 60 184 62 HOH HOH A . B 2 HOH 61 185 63 HOH HOH A . B 2 HOH 62 186 64 HOH HOH A . B 2 HOH 63 187 65 HOH HOH A . B 2 HOH 64 188 66 HOH HOH A . B 2 HOH 65 189 67 HOH HOH A . B 2 HOH 66 190 68 HOH HOH A . B 2 HOH 67 191 69 HOH HOH A . B 2 HOH 68 192 70 HOH HOH A . B 2 HOH 69 193 71 HOH HOH A . B 2 HOH 70 194 72 HOH HOH A . B 2 HOH 71 195 73 HOH HOH A . B 2 HOH 72 196 74 HOH HOH A . B 2 HOH 73 197 75 HOH HOH A . B 2 HOH 74 198 76 HOH HOH A . B 2 HOH 75 199 77 HOH HOH A . B 2 HOH 76 200 78 HOH HOH A . B 2 HOH 77 201 81 HOH HOH A . B 2 HOH 78 202 82 HOH HOH A . B 2 HOH 79 203 83 HOH HOH A . B 2 HOH 80 204 86 HOH HOH A . B 2 HOH 81 205 89 HOH HOH A . B 2 HOH 82 206 91 HOH HOH A . B 2 HOH 83 207 92 HOH HOH A . B 2 HOH 84 208 94 HOH HOH A . B 2 HOH 85 209 95 HOH HOH A . B 2 HOH 86 210 96 HOH HOH A . B 2 HOH 87 211 97 HOH HOH A . B 2 HOH 88 212 98 HOH HOH A . B 2 HOH 89 213 99 HOH HOH A . B 2 HOH 90 214 101 HOH HOH A . B 2 HOH 91 215 104 HOH HOH A . B 2 HOH 92 216 105 HOH HOH A . B 2 HOH 93 217 106 HOH HOH A . B 2 HOH 94 218 107 HOH HOH A . B 2 HOH 95 219 108 HOH HOH A . B 2 HOH 96 220 109 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 96 A MSE 84 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-12-18 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2018-07-18 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 6 'Structure model' Advisory 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software 3 5 'Structure model' pdbx_database_related 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 6 'Structure model' struct_conn 7 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 RESOLVE 'model building' . ? 3 SOLVE phasing . ? 4 CNS refinement 1.0 ? 5 CCP4 'data scaling' '(SCALA)' ? 6 RESOLVE phasing . ? 7 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 71 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -97.88 _pdbx_validate_torsion.psi -75.71 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A MSE 1 ? CE ? A MSE 13 CE 2 1 Y 0 A GLU 9 ? OE1 ? A GLU 21 OE1 3 1 Y 0 A GLU 9 ? OE2 ? A GLU 21 OE2 4 1 Y 0 A GLU 19 ? CG ? A GLU 31 CG 5 1 Y 0 A GLU 19 ? CD ? A GLU 31 CD 6 1 Y 0 A GLU 19 ? OE1 ? A GLU 31 OE1 7 1 Y 0 A GLU 19 ? OE2 ? A GLU 31 OE2 8 1 Y 0 A HIS 20 ? CB ? A HIS 32 CB 9 1 Y 0 A HIS 20 ? CG ? A HIS 32 CG 10 1 Y 0 A HIS 20 ? ND1 ? A HIS 32 ND1 11 1 Y 0 A HIS 20 ? CD2 ? A HIS 32 CD2 12 1 Y 0 A HIS 20 ? CE1 ? A HIS 32 CE1 13 1 Y 0 A HIS 20 ? NE2 ? A HIS 32 NE2 14 1 Y 0 A ARG 23 ? CG ? A ARG 35 CG 15 1 Y 0 A ARG 23 ? CD ? A ARG 35 CD 16 1 Y 0 A ARG 23 ? NE ? A ARG 35 NE 17 1 Y 0 A ARG 23 ? CZ ? A ARG 35 CZ 18 1 Y 0 A ARG 23 ? NH1 ? A ARG 35 NH1 19 1 Y 0 A ARG 23 ? NH2 ? A ARG 35 NH2 20 1 Y 0 A LYS 31 ? NZ ? A LYS 43 NZ 21 1 Y 0 A VAL 32 ? CG1 ? A VAL 44 CG1 22 1 Y 0 A LYS 33 ? CG ? A LYS 45 CG 23 1 Y 0 A LYS 33 ? CD ? A LYS 45 CD 24 1 Y 0 A LYS 33 ? CE ? A LYS 45 CE 25 1 Y 0 A LYS 33 ? NZ ? A LYS 45 NZ 26 1 Y 0 A GLN 49 ? CD ? A GLN 61 CD 27 1 Y 0 A GLN 49 ? OE1 ? A GLN 61 OE1 28 1 Y 0 A GLN 49 ? NE2 ? A GLN 61 NE2 29 1 Y 0 A ASP 50 ? OD1 ? A ASP 62 OD1 30 1 Y 0 A ASP 50 ? OD2 ? A ASP 62 OD2 31 1 Y 0 A LYS 61 ? CE ? A LYS 73 CE 32 1 Y 0 A LYS 61 ? NZ ? A LYS 73 NZ 33 1 Y 0 A GLU 66 ? CG ? A GLU 78 CG 34 1 Y 0 A GLU 66 ? CD ? A GLU 78 CD 35 1 Y 0 A GLU 66 ? OE1 ? A GLU 78 OE1 36 1 Y 0 A GLU 66 ? OE2 ? A GLU 78 OE2 37 1 Y 0 A ARG 71 ? CG ? A ARG 83 CG 38 1 Y 0 A ARG 71 ? CD ? A ARG 83 CD 39 1 Y 0 A ARG 71 ? NE ? A ARG 83 NE 40 1 Y 0 A ARG 71 ? CZ ? A ARG 83 CZ 41 1 Y 0 A ARG 71 ? NH1 ? A ARG 83 NH1 42 1 Y 0 A ARG 71 ? NH2 ? A ARG 83 NH2 43 1 Y 0 A ARG 75 ? CB ? A ARG 87 CB 44 1 Y 0 A ARG 75 ? CG ? A ARG 87 CG 45 1 Y 0 A ARG 75 ? CD ? A ARG 87 CD 46 1 Y 0 A ARG 75 ? NE ? A ARG 87 NE 47 1 Y 0 A ARG 75 ? CZ ? A ARG 87 CZ 48 1 Y 0 A ARG 75 ? NH1 ? A ARG 87 NH1 49 1 Y 0 A ARG 75 ? NH2 ? A ARG 87 NH2 50 1 Y 0 A ARG 76 ? CG ? A ARG 88 CG 51 1 Y 0 A ARG 76 ? CD ? A ARG 88 CD 52 1 Y 0 A ARG 76 ? NE ? A ARG 88 NE 53 1 Y 0 A ARG 76 ? CZ ? A ARG 88 CZ 54 1 Y 0 A ARG 76 ? NH1 ? A ARG 88 NH1 55 1 Y 0 A ARG 76 ? NH2 ? A ARG 88 NH2 56 1 Y 0 A GLU 82 ? CG ? A GLU 94 CG 57 1 Y 0 A GLU 82 ? CD ? A GLU 94 CD 58 1 Y 0 A GLU 82 ? OE1 ? A GLU 94 OE1 59 1 Y 0 A GLU 82 ? OE2 ? A GLU 94 OE2 60 1 Y 0 A ALA 83 ? CB ? A ALA 95 CB 61 1 Y 0 A LYS 87 ? CD ? A LYS 99 CD 62 1 Y 0 A LYS 87 ? CE ? A LYS 99 CE 63 1 Y 0 A LYS 87 ? NZ ? A LYS 99 NZ 64 1 Y 0 A LYS 90 ? CE ? A LYS 102 CE 65 1 Y 0 A LYS 90 ? NZ ? A LYS 102 NZ 66 1 Y 0 A SER 93 ? OG ? A SER 105 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A HIS -2 ? A HIS 10 11 1 Y 1 A HIS -1 ? A HIS 11 12 1 Y 1 A HIS 0 ? A HIS 12 13 1 Y 1 A LEU 108 ? A LEU 120 14 1 Y 1 A LYS 109 ? A LYS 121 15 1 Y 1 A ASP 110 ? A ASP 122 16 1 Y 1 A SER 111 ? A SER 123 17 1 Y 1 A ASP 112 ? A ASP 124 18 1 Y 1 A TYR 113 ? A TYR 125 19 1 Y 1 A GLU 114 ? A GLU 126 20 1 Y 1 A VAL 115 ? A VAL 127 21 1 Y 1 A HIS 116 ? A HIS 128 22 1 Y 1 A ASP 117 ? A ASP 129 23 1 Y 1 A HIS 118 ? A HIS 130 24 1 Y 1 A HIS 119 ? A HIS 131 25 1 Y 1 A HIS 120 ? A HIS 132 26 1 Y 1 A HIS 121 ? A HIS 133 27 1 Y 1 A GLU 122 ? A GLU 134 28 1 Y 1 A HIS 123 ? A HIS 135 29 1 Y 1 A HIS 124 ? A HIS 136 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #