HEADER ISOMERASE 12-FEB-03 1O1X TITLE CRYSTAL STRUCTURE OF A RIBOSE 5-PHOSPHATE ISOMERASE RPIB (TM1080) FROM TITLE 2 THERMOTOGA MARITIMA AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE RPIB; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1080; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 11 25-JAN-23 1O1X 1 REMARK SEQADV REVDAT 10 24-JUL-19 1O1X 1 REMARK LINK REVDAT 9 18-JUL-18 1O1X 1 REMARK REVDAT 8 04-OCT-17 1O1X 1 REMARK REVDAT 7 13-JUL-11 1O1X 1 VERSN REVDAT 6 23-MAR-11 1O1X 1 TITLE KEYWDS REVDAT 5 24-FEB-09 1O1X 1 VERSN REVDAT 4 18-JAN-05 1O1X 1 AUTHOR KEYWDS REMARK REVDAT 3 03-AUG-04 1O1X 1 JRNL COMPND TITLE KEYWDS REVDAT 2 22-JUL-03 1O1X 1 JRNL REVDAT 1 01-APR-03 1O1X 0 JRNL AUTH Q.XU,R.SCHWARZENBACHER,D.MCMULLAN,F.VON DELFT,L.S.BRINEN, JRNL AUTH 2 J.M.CANAVES,X.DAI,A.M.DEACON,M.A.ELSLIGER,S.ESHAGI,R.FLOYD, JRNL AUTH 3 A.GODZIK,C.GRITTINI,S.K.GRZECHNIK,L.JAROSZEWSKI,C.KARLAK, JRNL AUTH 4 H.E.KLOCK,E.KOESEMA,J.S.KOVARIK,A.KREUSCH,P.KUHN,S.A.LESLEY, JRNL AUTH 5 I.LEVIN,T.M.MCPHILLIPS,M.D.MILLER,A.MORSE,K.MOY,J.OUYANG, JRNL AUTH 6 R.PAGE,K.QUIJANO,A.ROBB,G.SPRAGGON,F.STEVENS, JRNL AUTH 7 H.VAN DEN BEDEM,J.VELASQUEZ,J.VINCENT,X.WANG,B.WEST,G.WOLF, JRNL AUTH 8 K.O.HODGSON,J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A RIBOSE-5-PHOSPHATE ISOMERASE RPIB JRNL TITL 2 (TM1080) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION. JRNL REF PROTEINS V. 56 171 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15162497 JRNL DOI 10.1002/PROT.20129 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.1900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1139 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.442 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1199 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1122 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1622 ; 1.518 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2603 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 144 ; 5.529 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;35.571 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 215 ;11.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.732 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 183 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1314 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 247 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 220 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1269 ; 0.239 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 702 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 140 ; 0.240 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 90 ; 0.308 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 724 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1167 ; 1.467 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 475 ; 2.562 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 455 ; 4.246 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9050 7.1650 29.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.0047 T22: -0.0036 REMARK 3 T33: -0.0011 T12: 0.0014 REMARK 3 T13: -0.0128 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.1105 L22: 0.8983 REMARK 3 L33: 1.1127 L12: -0.1773 REMARK 3 L13: -0.2288 L23: 0.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0099 S13: -0.0212 REMARK 3 S21: -0.0314 S22: 0.0247 S23: 0.0693 REMARK 3 S31: -0.0308 S32: -0.0846 S33: -0.0074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE IS WEAK DIFFERENCE DENSITY AT THE REMARK 3 N-TERMINUS, APPARENTLY INDICATING AT LEAST ONE MORE HIS- TAG REMARK 3 RESIDUE; IT WAS NOT MODELLED BECAUSE AT FULL OCCUPANCY, IT REMARK 3 RESULTS IN A WORSE RFREE. SEVERAL LARGE BLOBS OF DIFFERENCE REMARK 3 DENSITY THAT COULD NOT BE UNAMBIGUOUSLY IDENTIFIED, AND HAVE REMARK 3 BEEN MODELLED AS CLOSELY-SPACED SOLVENT INSTEAD. THESE OCCUR REMARK 3 NEAR THE FOLLOWING:A25, A51, A60, A82, A114, A127, A133. INITIAL REMARK 3 REFINEMENT WAS PERFORMED USING CNS. REBUILDING WAS PERFORMED REMARK 3 USING XFIT. REMARK 4 REMARK 4 1O1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000001701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97931, 0.97892 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : FLAT MIRROR,SINGLE CRYSTAL REMARK 200 SI(311) BENT MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XFIT REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15973 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.788 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 % (+/-)-2-METHYL-2,4-PENTANEDIOL; REMARK 280 0.1 M HEPES PH 7.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.94500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.87000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.94500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.87000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.74500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.94500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.87000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.74500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.94500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.87000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE BIOLOGICAL UNIT IS A TETRAMER WITH 222 POINT SYMMETRY, REMARK 300 FORMED BY CRYSTALLOGRAPHIC SYMMETRY, AS ADJUDGED BY REMARK 300 EXTENSIVE HYDROPHOBIC CONTACTS BETWEEN THESE UNITS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 61.49000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 61.49000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 87.74000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 87.74000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 496 O HOH A 497 1.86 REMARK 500 O HOH A 476 O HOH A 478 1.90 REMARK 500 O HOH A 477 O HOH A 478 2.10 REMARK 500 O HOH A 493 O HOH A 494 2.10 REMARK 500 O HOH A 479 O HOH A 480 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 482 O HOH A 483 3656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 141 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282947 RELATED DB: TARGETDB DBREF 1O1X A 2 143 UNP Q9X0G9 Q9X0G9_THEMA 2 143 SEQADV 1O1X MSE A -11 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X GLY A -10 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X SER A -9 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X ASP A -8 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X LYS A -7 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X ILE A -6 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X HIS A -5 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X HIS A -4 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X HIS A -3 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X HIS A -2 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X HIS A -1 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X HIS A 0 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X VAL A 1 UNP Q9X0G9 EXPRESSION TAG SEQADV 1O1X OCS A 65 UNP Q9X0G9 CYS 65 MODIFIED RESIDUE SEQADV 1O1X MSE A 71 UNP Q9X0G9 MET 71 MODIFIED RESIDUE SEQADV 1O1X MSE A 91 UNP Q9X0G9 MET 91 MODIFIED RESIDUE SEQRES 1 A 155 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 A 155 LYS ILE ALA ILE ALA SER ASP HIS ALA ALA PHE GLU LEU SEQRES 3 A 155 LYS GLU LYS VAL LYS ASN TYR LEU LEU GLY LYS GLY ILE SEQRES 4 A 155 GLU VAL GLU ASP HIS GLY THR TYR SER GLU GLU SER VAL SEQRES 5 A 155 ASP TYR PRO ASP TYR ALA LYS LYS VAL VAL GLN SER ILE SEQRES 6 A 155 LEU SER ASN GLU ALA ASP PHE GLY ILE LEU LEU OCS GLY SEQRES 7 A 155 THR GLY LEU GLY MSE SER ILE ALA ALA ASN ARG TYR ARG SEQRES 8 A 155 GLY ILE ARG ALA ALA LEU CYS LEU PHE PRO ASP MSE ALA SEQRES 9 A 155 ARG LEU ALA ARG SER HIS ASN ASN ALA ASN ILE LEU VAL SEQRES 10 A 155 LEU PRO GLY ARG LEU ILE GLY ALA GLU LEU ALA PHE TRP SEQRES 11 A 155 ILE VAL ASP THR PHE LEU SER THR PRO PHE ASP GLY GLY SEQRES 12 A 155 ARG HIS GLU ARG ARG ILE ARG LYS ILE ASP GLU VAL MODRES 1O1X OCS A 65 CYS CYSTEINESULFONIC ACID MODRES 1O1X MSE A 71 MET SELENOMETHIONINE MODRES 1O1X MSE A 91 MET SELENOMETHIONINE HET OCS A 65 9 HET MSE A 71 8 HET MSE A 91 8 HET MPD A 301 8 HETNAM OCS CYSTEINESULFONIC ACID HETNAM MSE SELENOMETHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 OCS C3 H7 N O5 S FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 MPD C6 H14 O2 FORMUL 3 HOH *212(H2 O) HELIX 1 1 ALA A 11 LYS A 25 1 15 HELIX 2 2 ASP A 41 SER A 55 1 15 HELIX 3 3 GLY A 68 ASN A 76 1 9 HELIX 4 4 PHE A 88 HIS A 98 1 11 HELIX 5 5 GLY A 112 THR A 126 1 15 HELIX 6 6 ARG A 132 ASP A 141 1 10 SHEET 1 A 5 GLU A 28 ASP A 31 0 SHEET 2 A 5 LYS A 2 SER A 7 1 N ILE A 3 O GLU A 30 SHEET 3 A 5 PHE A 60 OCS A 65 1 O ILE A 62 N ALA A 4 SHEET 4 A 5 ILE A 103 PRO A 107 1 O LEU A 104 N GLY A 61 SHEET 5 A 5 ALA A 83 LEU A 85 1 N ALA A 84 O ILE A 103 LINK C LEU A 64 N OCS A 65 1555 1555 1.33 LINK C OCS A 65 N GLY A 66 1555 1555 1.32 LINK C GLY A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N SER A 72 1555 1555 1.32 LINK C ASP A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N ALA A 92 1555 1555 1.34 CISPEP 1 GLY A 33 THR A 34 0 -0.37 SITE 1 AC1 3 LEU A 87 PHE A 88 ILE A 111 CRYST1 61.490 73.890 87.740 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016263 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011397 0.00000