HEADER TRANSFERASE 12-FEB-03 1O1Y TITLE CRYSTAL STRUCTURE OF A GLUTAMINE AMIDOTRANSFERASE (TM1158) FROM TITLE 2 THERMOTOGA MARITIMA AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN TM1158; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1158; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FLAVODOXIN-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 11 25-JAN-23 1O1Y 1 REMARK SEQADV LINK REVDAT 10 18-JUL-18 1O1Y 1 REMARK REVDAT 9 04-OCT-17 1O1Y 1 REMARK REVDAT 8 13-JUL-11 1O1Y 1 VERSN REVDAT 7 23-MAR-11 1O1Y 1 HEADER TITLE KEYWDS REVDAT 6 24-FEB-09 1O1Y 1 VERSN REVDAT 5 18-JAN-05 1O1Y 1 AUTHOR KEYWDS REMARK REVDAT 4 23-MAR-04 1O1Y 1 JRNL REVDAT 3 29-JUL-03 1O1Y 1 REMARK REVDAT 2 22-JUL-03 1O1Y 1 REMARK REVDAT 1 11-MAR-03 1O1Y 0 JRNL AUTH R.SCHWARZENBACHER,A.M.DEACON,L.JAROSZEWSKI,L.S.BRINEN, JRNL AUTH 2 J.M.CANAVES,X.DAI,M.A.ELSLIGER,R.FLOYD,A.GODZIK,C.GRITTINI, JRNL AUTH 3 S.K.GRZECHNIK,H.E.KLOCK,E.KOESEMA,J.S.KOVARIK,A.KREUSCH, JRNL AUTH 4 P.KUHN,S.A.LESLEY,D.MCMULLAN,T.M.MCPHILLIPS,M.D.MILLER, JRNL AUTH 5 A.MORSE,K.MOY,M.S.NELSON,J.OUYANG,R.PAGE,A.ROBB,K.QUIJANO, JRNL AUTH 6 G.SPRAGGON,R.C.STEVENS,H.VAN DEN BEDEM,J.VELASQUEZ, JRNL AUTH 7 J.VINCENT,F.VON DELFT,X.WANG,B.WEST,G.WOLF,K.O.HODGSON, JRNL AUTH 8 J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLUTAMINE AMIDO TRANSFERASE JRNL TITL 2 (TM1158) FROM THERMOTOGA MARITIMA AT 1.7 A RESOLUTION. JRNL REF PROTEINS V. 54 801 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 14997577 JRNL DOI 10.1002/PROT.10614 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 34513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1922 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.23000 REMARK 3 B22 (A**2) : 1.23000 REMARK 3 B33 (A**2) : -1.85000 REMARK 3 B12 (A**2) : 0.62000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2029 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1826 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2734 ; 1.522 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4249 ; 0.812 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 229 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2177 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 436 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 368 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2115 ; 0.252 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1191 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 282 ; 0.219 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.325 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.295 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1144 ; 1.187 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1846 ; 2.176 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 885 ; 5.087 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 888 ; 7.910 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 227 REMARK 3 RESIDUE RANGE : A 401 A 409 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5977 29.0841 -2.2404 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0229 REMARK 3 T33: 0.0704 T12: -0.0228 REMARK 3 T13: -0.0280 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.0409 L22: 1.0499 REMARK 3 L33: 1.8487 L12: -0.3576 REMARK 3 L13: 0.1355 L23: -0.0884 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: -0.0568 S13: 0.0549 REMARK 3 S21: 0.0217 S22: -0.0480 S23: 0.0032 REMARK 3 S31: -0.1446 S32: -0.0302 S33: 0.0581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE OCCUPANCIES ASSIGNED HERE TO THE MODELLED SULFATE GROUPS ARE REMARK 3 INACCURATE, REMARK 3 AS INDICATED BY PERSISTENT NEGATIVE OR POSITIVE DIFFERENCE DENSITY. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 XFIT/CCP4/TLS WAS ALSO USED IN REFINEMENT. REMARK 4 REMARK 4 1O1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000001702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-02; 24-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; APS REMARK 200 BEAMLINE : BL11-1; 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931; 0.979, 0.991 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : FLAT MIRROR,SINGLE CRYSTAL REMARK 200 SI(311) BENT MONOCHROMATOR; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : APS-1; ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XFIT REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36314 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.403 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE; 0.1 M BICINE REMARK 280 PH 9.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K. REMARK 280 2.4 M AMMONIUM SULFATE; 0.1 M CITRIC ACID PH 5.0, VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.55533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.27767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.91650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.63883 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 113.19417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.55533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 45.27767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 22.63883 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.91650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 113.19417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -45.27767 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -196.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -22.63883 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 68 CD CE NZ REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 663 O HOH A 765 1.93 REMARK 500 O HOH A 602 O HOH A 724 2.00 REMARK 500 OE1 GLU A 23 O HOH A 436 2.03 REMARK 500 O HOH A 498 O HOH A 704 2.04 REMARK 500 O HOH A 509 O HOH A 705 2.07 REMARK 500 OE2 GLU A 61 O HOH A 626 2.09 REMARK 500 O HOH A 513 O HOH A 597 2.17 REMARK 500 OE1 GLU A 75 O HOH A 698 2.19 REMARK 500 O HOH A 525 O HOH A 702 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 494 O HOH A 710 6554 1.91 REMARK 500 O HOH A 664 O HOH A 765 6554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -159.51 -103.90 REMARK 500 GLU A 60 44.52 -99.16 REMARK 500 OCS A 88 -117.65 67.57 REMARK 500 TRP A 137 76.12 -151.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283024 RELATED DB: TARGETDB DBREF 1O1Y A 2 227 UNP Q9X0P2 Q9X0P2_THEMA 2 227 SEQADV 1O1Y MSE A -11 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y GLY A -10 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y SER A -9 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y ASP A -8 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y LYS A -7 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y ILE A -6 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y HIS A -5 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y HIS A -4 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y HIS A -3 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y HIS A -2 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y HIS A -1 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y HIS A 0 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y VAL A 1 UNP Q9X0P2 EXPRESSION TAG SEQADV 1O1Y MSE A 16 UNP Q9X0P2 MET 16 MODIFIED RESIDUE SEQADV 1O1Y MSE A 17 UNP Q9X0P2 MET 17 MODIFIED RESIDUE SEQADV 1O1Y MSE A 56 UNP Q9X0P2 MET 56 MODIFIED RESIDUE SEQADV 1O1Y OCS A 88 UNP Q9X0P2 CYS 88 MODIFIED RESIDUE SEQADV 1O1Y MSE A 93 UNP Q9X0P2 MET 93 MODIFIED RESIDUE SEQADV 1O1Y MSE A 181 UNP Q9X0P2 MET 181 MODIFIED RESIDUE SEQADV 1O1Y MSE A 224 UNP Q9X0P2 MET 224 MODIFIED RESIDUE SEQRES 1 A 239 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 A 239 ARG VAL LEU ALA ILE ARG HIS VAL GLU ILE GLU ASP LEU SEQRES 3 A 239 GLY MSE MSE GLU ASP ILE PHE ARG GLU LYS ASN TRP SER SEQRES 4 A 239 PHE ASP TYR LEU ASP THR PRO LYS GLY GLU LYS LEU GLU SEQRES 5 A 239 ARG PRO LEU GLU GLU TYR SER LEU VAL VAL LEU LEU GLY SEQRES 6 A 239 GLY TYR MSE GLY ALA TYR GLU GLU GLU LYS TYR PRO PHE SEQRES 7 A 239 LEU LYS TYR GLU PHE GLN LEU ILE GLU GLU ILE LEU LYS SEQRES 8 A 239 LYS GLU ILE PRO PHE LEU GLY ILE OCS LEU GLY SER GLN SEQRES 9 A 239 MSE LEU ALA LYS VAL LEU GLY ALA SER VAL TYR ARG GLY SEQRES 10 A 239 LYS ASN GLY GLU GLU ILE GLY TRP TYR PHE VAL GLU LYS SEQRES 11 A 239 VAL SER ASP ASN LYS PHE PHE ARG GLU PHE PRO ASP ARG SEQRES 12 A 239 LEU ARG VAL PHE GLN TRP HIS GLY ASP THR PHE ASP LEU SEQRES 13 A 239 PRO ARG ARG ALA THR ARG VAL PHE THR SER GLU LYS TYR SEQRES 14 A 239 GLU ASN GLN GLY PHE VAL TYR GLY LYS ALA VAL GLY LEU SEQRES 15 A 239 GLN PHE HIS ILE GLU VAL GLY ALA ARG THR MSE LYS ARG SEQRES 16 A 239 TRP ILE GLU ALA TYR LYS ASP GLU LEU GLU LYS LYS LYS SEQRES 17 A 239 ILE ASP PRO ARG LEU LEU LEU GLU THR ALA GLU ARG GLU SEQRES 18 A 239 GLU LYS VAL LEU LYS GLY LEU LEU ARG SER LEU LEU GLU SEQRES 19 A 239 ARG MSE VAL GLU SER MODRES 1O1Y MSE A 16 MET SELENOMETHIONINE MODRES 1O1Y MSE A 17 MET SELENOMETHIONINE MODRES 1O1Y MSE A 56 MET SELENOMETHIONINE MODRES 1O1Y OCS A 88 CYS CYSTEINESULFONIC ACID MODRES 1O1Y MSE A 93 MET SELENOMETHIONINE MODRES 1O1Y MSE A 181 MET SELENOMETHIONINE MODRES 1O1Y MSE A 224 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 17 8 HET MSE A 56 8 HET OCS A 88 9 HET MSE A 93 8 HET MSE A 181 8 HET MSE A 224 8 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HETNAM MSE SELENOMETHIONINE HETNAM OCS CYSTEINESULFONIC ACID HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 SO4 9(O4 S 2-) FORMUL 11 HOH *358(H2 O) HELIX 1 1 GLY A 15 LYS A 24 1 10 HELIX 2 2 ASP A 32 GLY A 36 5 5 HELIX 3 3 PRO A 42 TYR A 46 5 5 HELIX 4 4 PRO A 65 GLU A 81 1 17 HELIX 5 5 OCS A 88 LEU A 98 1 11 HELIX 6 6 ASN A 122 ARG A 126 5 5 HELIX 7 7 GLY A 177 TYR A 188 1 12 HELIX 8 8 TYR A 188 LYS A 195 1 8 HELIX 9 9 ASP A 198 GLU A 226 1 29 SHEET 1 A 9 SER A 27 LEU A 31 0 SHEET 2 A 9 ARG A 2 ILE A 6 1 N ALA A 5 O LEU A 31 SHEET 3 A 9 LEU A 48 LEU A 51 1 O VAL A 50 N LEU A 4 SHEET 4 A 9 PHE A 84 ILE A 87 1 O ILE A 87 N LEU A 51 SHEET 5 A 9 ALA A 167 LEU A 170 1 O VAL A 168 N GLY A 86 SHEET 6 A 9 GLY A 161 TYR A 164 -1 N TYR A 164 O ALA A 167 SHEET 7 A 9 THR A 149 THR A 153 -1 N THR A 149 O VAL A 163 SHEET 8 A 9 GLU A 110 LYS A 118 -1 N GLU A 117 O THR A 153 SHEET 9 A 9 ARG A 131 HIS A 138 -1 O VAL A 134 N TYR A 114 SHEET 1 B 2 VAL A 102 ARG A 104 0 SHEET 2 B 2 ASP A 140 PHE A 142 -1 O THR A 141 N TYR A 103 LINK C GLY A 15 N MSE A 16 1555 1555 1.33 LINK C MSE A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N GLU A 18 1555 1555 1.34 LINK C TYR A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N GLY A 57 1555 1555 1.33 LINK C ILE A 87 N OCS A 88 1555 1555 1.34 LINK C OCS A 88 N LEU A 89 1555 1555 1.33 LINK C GLN A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N LEU A 94 1555 1555 1.32 LINK C THR A 180 N MSE A 181 1555 1555 1.32 LINK C MSE A 181 N LYS A 182 1555 1555 1.33 LINK C ARG A 223 N MSE A 224 1555 1555 1.32 LINK C MSE A 224 N VAL A 225 1555 1555 1.33 SITE 1 AC1 6 HIS A 0 ARG A 2 SER A 27 LYS A 194 SITE 2 AC1 6 HOH A 598 HOH A 733 SITE 1 AC2 7 GLY A 54 HIS A 138 GLY A 139 ASP A 140 SITE 2 AC2 7 HOH A 506 HOH A 507 HOH A 533 SITE 1 AC3 3 ARG A 2 LYS A 194 HOH A 640 SITE 1 AC4 6 ASN A 107 ARG A 131 ARG A 133 HOH A 571 SITE 2 AC4 6 HOH A 674 HOH A 746 SITE 1 AC5 5 ARG A 126 ARG A 146 ARG A 223 HOH A 682 SITE 2 AC5 5 HOH A 747 SITE 1 AC6 6 ASN A 25 ARG A 104 LYS A 106 HOH A 529 SITE 2 AC6 6 HOH A 617 HOH A 652 SITE 1 AC7 7 ARG A 133 ARG A 208 LYS A 211 ARG A 218 SITE 2 AC7 7 HOH A 528 HOH A 540 HOH A 746 SITE 1 AC8 7 PRO A 129 ASP A 130 ARG A 150 HOH A 415 SITE 2 AC8 7 HOH A 454 HOH A 706 HOH A 726 SITE 1 AC9 3 ARG A 179 ARG A 183 HOH A 514 CRYST1 92.362 92.362 135.833 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010827 0.006251 0.000000 0.00000 SCALE2 0.000000 0.012502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007362 0.00000