HEADER TRANSFERASE 20-FEB-03 1O25 TITLE CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN TITLE 2 (TM0449) FROM THERMOTOGA MARITIMA WITH DUMP AT 2.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE THYX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TS, TSASE, THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0449; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0449, THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JCSG, JOINT CENTER FOR STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.I.MATHEWS,A.M.DEACON,J.M.CANAVES,D.MCMULLAN,S.A.LESLEY,S.AGARWALLA, AUTHOR 2 P.KUHN,JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 20-SEP-23 1O25 1 REMARK REVDAT 6 25-JAN-23 1O25 1 REMARK SEQADV REVDAT 5 18-JUL-18 1O25 1 REMARK REVDAT 4 04-OCT-17 1O25 1 REMARK REVDAT 3 24-FEB-09 1O25 1 VERSN REVDAT 2 14-NOV-06 1O25 1 AUTHOR KEYWDS REVDAT 1 24-JUN-03 1O25 0 JRNL AUTH I.I.MATHEWS,A.M.DEACON,J.M.CANAVES,D.MCMULLAN,S.A.LESLEY, JRNL AUTH 2 S.AGARWALLA,P.KUHN JRNL TITL FUNCTIONAL ANALYSIS OF SUBSTRATE AND COFACTOR COMPLEX JRNL TITL 2 STRUCTURES OF A THYMIDYLATE SYNTHASE-COMPLEMENTING PROTEIN JRNL REF STRUCTURE V. 11 677 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12791256 JRNL DOI 10.1016/S0969-2126(03)00097-2 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 33242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1644 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 32 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 899 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.3217 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.57 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.11300 REMARK 3 B22 (A**2) : 5.05800 REMARK 3 B33 (A**2) : 2.05500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.220 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.266 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.052 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.969 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.941 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT CORRECTION REMARK 3 KSOL : 36.28 REMARK 3 BSOL : 0.35 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000001709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98039 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : FLAT MIRROR,SINGLE CRYSTAL REMARK 200 SI(311) BENT MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 53.957 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33800 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: 1KQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 49% PEG 200, 0.1M TRIS-HCL, PH 8.0, REMARK 280 VAPOR DIFFUSION,HANGING DROP, TEMPERATURE 295K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.34100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.86350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.35150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.86350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.34100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.35150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A 34 REMARK 465 LEU A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 VAL A 218 REMARK 465 GLN A 219 REMARK 465 VAL A 220 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 34 REMARK 465 LEU B 35 REMARK 465 LYS B 36 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 MET C 33 REMARK 465 GLY C 34 REMARK 465 LEU C 35 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 ASP D -8 REMARK 465 LYS D -7 REMARK 465 ILE D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 ASP D 32 REMARK 465 MET D 33 REMARK 465 GLY D 34 REMARK 465 LEU D 35 REMARK 465 LYS D 36 REMARK 465 GLN D 219 REMARK 465 VAL D 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CB CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 37 CB CG OD1 OD2 REMARK 470 GLU A 38 CB CG CD OE1 OE2 REMARK 470 GLU A 39 CB CG CD OE1 OE2 REMARK 470 ASP B 37 CB CG OD1 OD2 REMARK 470 GLU B 38 CB CG CD OE1 OE2 REMARK 470 PHE D 31 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 -53.72 73.12 REMARK 500 MET A 1 129.08 -36.44 REMARK 500 LEU A 6 -149.84 55.15 REMARK 500 THR A 112 -73.40 -48.84 REMARK 500 ALA A 209 -36.43 -143.15 REMARK 500 TYR A 210 108.75 -46.94 REMARK 500 LEU B 6 -155.26 51.62 REMARK 500 ASN B 19 -165.61 -165.69 REMARK 500 GLU B 38 -97.56 171.62 REMARK 500 GLU B 107 115.41 -28.90 REMARK 500 LEU C 6 -148.69 56.84 REMARK 500 GLU C 38 -71.07 -33.07 REMARK 500 TYR C 96 71.80 -65.35 REMARK 500 LEU C 215 1.08 -64.28 REMARK 500 LEU D 6 -153.61 56.48 REMARK 500 ASN D 19 -156.54 -152.87 REMARK 500 SER D 92 130.97 178.46 REMARK 500 PRO D 101 158.46 -49.21 REMARK 500 ALA D 175 58.63 -91.11 REMARK 500 GLU D 217 29.48 -157.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP C 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMP D 618 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O24 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA AT 2.0 A RESOLUTION REMARK 900 RELATED ID: 1O26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND DUMP AT 1.6 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O27 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND BRDUMP AT 2.3 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O28 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FDUMP AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 1O29 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND FDUMP AT 2.0 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O2A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AT 1.8 A RESOLUTION REMARK 900 RELATED ID: 1O2B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND PO4 AT 2.45 A REMARK 900 RESOLUTION DBREF 1O25 A 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O25 B 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O25 C 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O25 D 1 220 UNP Q9WYT0 THYX_THEMA 1 220 SEQADV 1O25 MET A -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 GLY A -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 SER A -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 ASP A -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 LYS A -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 ILE A -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS A -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS A -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS A -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS A -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS A -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS A 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 MET B -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 GLY B -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 SER B -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 ASP B -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 LYS B -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 ILE B -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS B -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS B -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS B -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS B -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS B -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS B 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 MET C -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 GLY C -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 SER C -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 ASP C -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 LYS C -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 ILE C -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS C -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS C -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS C -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS C -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS C -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS C 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 MET D -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 GLY D -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 SER D -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 ASP D -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 LYS D -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 ILE D -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS D -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS D -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS D -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS D -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS D -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O25 HIS D 0 UNP Q9WYT0 EXPRESSION TAG SEQRES 1 A 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 A 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 A 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 A 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 A 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 A 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 A 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 A 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 A 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 A 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 A 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 A 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 A 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 A 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 A 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 A 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 A 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 B 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 B 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 B 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 B 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 B 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 B 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 B 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 B 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 B 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 B 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 B 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 B 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 B 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 B 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 B 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 B 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 B 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 C 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 C 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 C 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 C 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 C 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 C 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 C 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 C 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 C 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 C 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 C 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 C 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 C 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 C 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 C 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 C 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 C 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 D 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 D 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 D 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 D 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 D 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 D 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 D 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 D 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 D 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 D 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 D 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 D 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 D 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 D 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 D 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 D 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 D 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 D 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL HET UMP A 603 20 HET UMP B 608 20 HET UMP C 613 20 HET UMP D 618 20 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETSYN UMP DUMP FORMUL 5 UMP 4(C9 H13 N2 O8 P) FORMUL 9 HOH *225(H2 O) HELIX 1 1 ASN A 19 SER A 30 1 12 HELIX 2 2 ASP A 37 HIS A 51 1 15 HELIX 3 3 GLU A 54 HIS A 59 5 6 HELIX 4 4 ILE A 70 ARG A 78 1 9 HELIX 5 5 SER A 102 GLU A 107 5 6 HELIX 6 6 PRO A 114 SER A 139 1 26 HELIX 7 7 PRO A 142 ARG A 147 1 6 HELIX 8 8 ILE A 148 LEU A 150 5 3 HELIX 9 9 ALA A 164 ALA A 175 1 12 HELIX 10 10 GLN A 180 CYS A 198 1 19 HELIX 11 11 CYS A 198 ALA A 209 1 12 HELIX 12 12 ASN B 19 PHE B 31 1 13 HELIX 13 13 GLU B 38 HIS B 51 1 14 HELIX 14 14 GLU B 54 HIS B 59 5 6 HELIX 15 15 ILE B 70 PHE B 77 1 8 HELIX 16 16 SER B 102 LEU B 106 5 5 HELIX 17 17 PRO B 114 SER B 139 1 26 HELIX 18 18 PRO B 142 ARG B 147 1 6 HELIX 19 19 ILE B 148 LEU B 150 5 3 HELIX 20 20 ALA B 164 ALA B 175 1 12 HELIX 21 21 GLN B 180 CYS B 198 1 19 HELIX 22 22 CYS B 198 ALA B 209 1 12 HELIX 23 23 ASP B 213 GLU B 217 5 5 HELIX 24 24 ASN C 19 VAL C 29 1 11 HELIX 25 25 ASP C 37 HIS C 51 1 15 HELIX 26 26 GLU C 54 HIS C 59 5 6 HELIX 27 27 ILE C 70 PHE C 77 1 8 HELIX 28 28 SER C 88 SER C 92 5 5 HELIX 29 29 SER C 102 GLU C 107 5 6 HELIX 30 30 PRO C 114 GLY C 140 1 27 HELIX 31 31 PRO C 142 ARG C 147 1 6 HELIX 32 32 ILE C 148 LEU C 150 5 3 HELIX 33 33 ALA C 164 ALA C 175 1 12 HELIX 34 34 GLN C 180 CYS C 198 1 19 HELIX 35 35 CYS C 198 ALA C 209 1 12 HELIX 36 36 ASN D 19 VAL D 29 1 11 HELIX 37 37 ASP D 37 HIS D 51 1 15 HELIX 38 38 GLU D 54 HIS D 59 5 6 HELIX 39 39 ILE D 70 PHE D 77 1 8 HELIX 40 40 SER D 88 SER D 92 5 5 HELIX 41 41 SER D 102 GLU D 107 5 6 HELIX 42 42 PRO D 114 GLY D 140 1 27 HELIX 43 43 PRO D 142 ARG D 147 1 6 HELIX 44 44 ILE D 148 LEU D 150 5 3 HELIX 45 45 ALA D 164 ALA D 175 1 12 HELIX 46 46 GLN D 180 CYS D 198 1 19 HELIX 47 47 CYS D 198 ALA D 209 1 12 HELIX 48 48 ILE D 214 VAL D 218 5 5 SHEET 1 A 5 LYS A 2 ILE A 5 0 SHEET 2 A 5 GLY A 9 MET A 17 -1 O VAL A 11 N ILE A 3 SHEET 3 A 5 VAL A 61 PRO A 69 -1 O HIS A 65 N GLU A 12 SHEET 4 A 5 TYR A 155 ASN A 163 -1 O PHE A 158 N VAL A 66 SHEET 5 A 5 SER A 83 GLU A 86 -1 N ASN A 85 O PHE A 159 SHEET 1 B 5 LYS B 2 ILE B 5 0 SHEET 2 B 5 GLY B 9 MET B 17 -1 O GLY B 9 N ILE B 5 SHEET 3 B 5 VAL B 61 PRO B 69 -1 O HIS B 65 N GLU B 12 SHEET 4 B 5 TYR B 155 ASN B 163 -1 O PHE B 158 N VAL B 66 SHEET 5 B 5 SER B 83 GLU B 86 -1 N SER B 83 O THR B 161 SHEET 1 C 5 LYS C 2 ILE C 5 0 SHEET 2 C 5 GLY C 9 MET C 17 -1 O VAL C 11 N ILE C 3 SHEET 3 C 5 VAL C 61 PRO C 69 -1 O VAL C 61 N MET C 17 SHEET 4 C 5 TYR C 155 ASN C 163 -1 O TRP C 160 N PHE C 64 SHEET 5 C 5 SER C 83 GLU C 86 -1 N SER C 83 O THR C 161 SHEET 1 D 5 LYS D 2 ILE D 5 0 SHEET 2 D 5 GLY D 9 MET D 17 -1 O VAL D 11 N ILE D 3 SHEET 3 D 5 VAL D 61 PRO D 69 -1 O VAL D 61 N MET D 17 SHEET 4 D 5 TYR D 155 ASN D 163 -1 O TRP D 160 N PHE D 64 SHEET 5 D 5 SER D 83 GLU D 86 -1 N SER D 83 O THR D 161 SITE 1 AC1 10 GLU A 86 LEU A 87 SER A 88 GLY A 89 SITE 2 AC1 10 ARG A 90 ARG A 147 GLN D 75 ARG D 78 SITE 3 AC1 10 ARG D 174 HOH D 437 SITE 1 AC2 12 GLU B 86 LEU B 87 SER B 88 GLY B 89 SITE 2 AC2 12 ARG B 90 ARG B 147 HOH B 347 GLN C 75 SITE 3 AC2 12 ARG C 78 ARG C 174 HOH C 326 HOH C 433 SITE 1 AC3 11 GLN B 75 ARG B 78 ARG B 174 HOH B 346 SITE 2 AC3 11 PHE C 77 GLU C 86 LEU C 87 SER C 88 SITE 3 AC3 11 GLY C 89 ARG C 90 ARG C 147 SITE 1 AC4 13 GLN A 75 ARG A 78 ARG A 174 HOH A 409 SITE 2 AC4 13 GLU D 86 LEU D 87 SER D 88 GLY D 89 SITE 3 AC4 13 ARG D 90 ARG D 147 HOH D 358 HOH D 434 SITE 4 AC4 13 HOH D 501 CRYST1 54.682 116.703 141.727 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018288 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007056 0.00000