HEADER TRANSFERASE 18-FEB-03 1O27 TITLE CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN TITLE 2 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND BRDUMP AT 2.3 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE THYX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TS, TSASE, THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0449; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0449, THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JCSG, JOINT CENTER FOR STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.I.MATHEWS,A.M.DEACON,J.M.CANAVES,D.MCMULLAN,S.A.LESLEY,S.AGARWALLA, AUTHOR 2 P.KUHN,JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 20-SEP-23 1O27 1 REMARK REVDAT 6 25-JAN-23 1O27 1 REMARK SEQADV REVDAT 5 18-JUL-18 1O27 1 REMARK REVDAT 4 04-OCT-17 1O27 1 REMARK REVDAT 3 24-FEB-09 1O27 1 VERSN REVDAT 2 14-NOV-06 1O27 1 AUTHOR KEYWDS REVDAT 1 24-JUN-03 1O27 0 JRNL AUTH I.I.MATHEWS,A.M.DEACON,J.M.CANAVES,D.MCMULLAN,S.A.LESLEY, JRNL AUTH 2 S.AGARWALLA,P.KUHN JRNL TITL FUNCTIONAL ANALYSIS OF SUBSTRATE AND COFACTOR COMPLEX JRNL TITL 2 STRUCTURES OF A THYMIDYLATE SYNTHASE-COMPLEMENTING PROTEIN JRNL REF STRUCTURE V. 11 677 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12791256 JRNL DOI 10.1016/S0969-2126(03)00097-2 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 39284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1971 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 39 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 897 REMARK 3 BIN R VALUE (WORKING SET) : 0.2232 REMARK 3 BIN FREE R VALUE : 0.2744 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.37 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 41 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 296 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.69800 REMARK 3 B22 (A**2) : 1.94200 REMARK 3 B33 (A**2) : 4.75600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.220 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.176 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.865 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.935 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT CORRECTION REMARK 3 KSOL : 37.87 REMARK 3 BSOL : 0.38 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000001711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : FLAT MIRROR,SINGLE CRYSTAL REMARK 200 SI(311) BENT MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.477 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: 1KQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% PEG 200, 0.1M HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION,HANGING DROP, TEMPERATURE 295K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.17450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.27850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.21400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.27850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.17450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.21400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 VAL A 218 REMARK 465 GLN A 219 REMARK 465 VAL A 220 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 36 REMARK 465 ASP B 37 REMARK 465 GLU B 38 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 ASP C 32 REMARK 465 MET C 33 REMARK 465 GLY C 34 REMARK 465 LEU C 35 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 ASP D -8 REMARK 465 LYS D -7 REMARK 465 ILE D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 GLY D 34 REMARK 465 LEU D 35 REMARK 465 LYS D 36 REMARK 465 GLN D 219 REMARK 465 VAL D 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CB CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 38 CB CG CD OE1 OE2 REMARK 470 GLU A 39 CB CG CD OE1 OE2 REMARK 470 LEU B 35 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -156.56 56.17 REMARK 500 PHE A 10 158.11 178.51 REMARK 500 LYS A 36 -146.33 -149.54 REMARK 500 LEU B 6 -152.13 56.45 REMARK 500 TYR B 96 82.11 -66.10 REMARK 500 LEU C 6 -141.84 54.90 REMARK 500 ASP C 37 84.06 -153.62 REMARK 500 LEU D 6 -151.04 55.83 REMARK 500 ASN D 19 -167.02 -165.97 REMARK 500 SER D 30 -41.81 -146.81 REMARK 500 ALA D 82 175.81 179.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BRU A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BRU B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BRU C 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BRU D 618 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O24 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA AT 2.0 A RESOLUTION REMARK 900 RELATED ID: 1O25 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH DUMP AT 2.4 A RESOLUTION REMARK 900 RELATED ID: 1O26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND DUMP AT 1.6 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O28 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FDUMP AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 1O29 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND FDUMP AT 2.0 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O2A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AT 1.8 A RESOLUTION REMARK 900 RELATED ID: 1O2B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND PO4 AT 2.45 A REMARK 900 RESOLUTION DBREF 1O27 A 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O27 B 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O27 C 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O27 D 1 220 UNP Q9WYT0 THYX_THEMA 1 220 SEQADV 1O27 MET A -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 GLY A -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 SER A -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 ASP A -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 LYS A -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 ILE A -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS A -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS A -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS A -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS A -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS A -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS A 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 MET B -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 GLY B -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 SER B -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 ASP B -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 LYS B -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 ILE B -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS B -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS B -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS B -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS B -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS B -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS B 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 MET C -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 GLY C -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 SER C -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 ASP C -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 LYS C -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 ILE C -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS C -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS C -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS C -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS C -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS C -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS C 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 MET D -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 GLY D -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 SER D -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 ASP D -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 LYS D -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 ILE D -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS D -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS D -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS D -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS D -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS D -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O27 HIS D 0 UNP Q9WYT0 EXPRESSION TAG SEQRES 1 A 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 A 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 A 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 A 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 A 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 A 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 A 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 A 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 A 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 A 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 A 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 A 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 A 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 A 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 A 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 A 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 A 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 B 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 B 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 B 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 B 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 B 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 B 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 B 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 B 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 B 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 B 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 B 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 B 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 B 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 B 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 B 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 B 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 B 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 C 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 C 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 C 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 C 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 C 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 C 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 C 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 C 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 C 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 C 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 C 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 C 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 C 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 C 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 C 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 C 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 C 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 D 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 D 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 D 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 D 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 D 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 D 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 D 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 D 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 D 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 D 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 D 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 D 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 D 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 D 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 D 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 D 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 D 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 D 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL HET BRU A 603 21 HET FAD A 615 53 HET BRU B 608 21 HET FAD B 610 53 HET FAD C 605 53 HET BRU C 613 21 HET FAD D 600 53 HET BRU D 618 21 HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 5 BRU 4(C9 H12 BR N2 O8 P) FORMUL 6 FAD 4(C27 H33 N9 O15 P2) FORMUL 13 HOH *201(H2 O) HELIX 1 1 ASN A 19 VAL A 29 1 11 HELIX 2 2 SER A 30 ASP A 32 5 3 HELIX 3 3 ASP A 37 GLY A 52 1 16 HELIX 4 4 GLU A 54 HIS A 59 5 6 HELIX 5 5 ILE A 70 PHE A 77 1 8 HELIX 6 6 SER A 102 GLU A 107 5 6 HELIX 7 7 PRO A 114 SER A 139 1 26 HELIX 8 8 PRO A 142 ARG A 147 1 6 HELIX 9 9 ILE A 148 LEU A 150 5 3 HELIX 10 10 ALA A 164 ALA A 175 1 12 HELIX 11 11 GLN A 180 CYS A 198 1 19 HELIX 12 12 CYS A 198 ALA A 209 1 12 HELIX 13 13 ASN B 19 VAL B 29 1 11 HELIX 14 14 SER B 30 ASP B 32 5 3 HELIX 15 15 GLU B 39 GLY B 52 1 14 HELIX 16 16 GLU B 54 HIS B 59 5 6 HELIX 17 17 ILE B 70 PHE B 77 1 8 HELIX 18 18 SER B 102 GLU B 107 5 6 HELIX 19 19 PRO B 114 SER B 139 1 26 HELIX 20 20 PRO B 142 ARG B 147 1 6 HELIX 21 21 ILE B 148 LEU B 150 5 3 HELIX 22 22 ALA B 164 ALA B 175 1 12 HELIX 23 23 GLN B 180 CYS B 198 1 19 HELIX 24 24 CYS B 198 ALA B 209 1 12 HELIX 25 25 ASP B 213 GLU B 217 5 5 HELIX 26 26 ASN C 19 VAL C 29 1 11 HELIX 27 27 ASP C 37 GLY C 52 1 16 HELIX 28 28 GLU C 54 HIS C 59 5 6 HELIX 29 29 ILE C 70 PHE C 77 1 8 HELIX 30 30 SER C 102 GLU C 107 5 6 HELIX 31 31 PRO C 114 GLY C 140 1 27 HELIX 32 32 PRO C 142 ARG C 147 1 6 HELIX 33 33 ILE C 148 LEU C 150 5 3 HELIX 34 34 ALA C 164 ALA C 175 1 12 HELIX 35 35 GLN C 180 CYS C 198 1 19 HELIX 36 36 CYS C 198 ALA C 209 1 12 HELIX 37 37 ASN D 19 VAL D 29 1 11 HELIX 38 38 ASP D 37 GLY D 52 1 16 HELIX 39 39 GLU D 54 HIS D 59 5 6 HELIX 40 40 ILE D 70 PHE D 77 1 8 HELIX 41 41 SER D 102 GLU D 107 5 6 HELIX 42 42 PRO D 114 GLY D 140 1 27 HELIX 43 43 PRO D 142 ARG D 147 1 6 HELIX 44 44 ILE D 148 LEU D 150 5 3 HELIX 45 45 ALA D 164 ALA D 175 1 12 HELIX 46 46 GLN D 180 CYS D 198 1 19 HELIX 47 47 CYS D 198 ALA D 209 1 12 HELIX 48 48 ASP D 213 GLU D 217 5 5 SHEET 1 A 5 MET A 1 ILE A 5 0 SHEET 2 A 5 GLY A 9 MET A 17 -1 O VAL A 11 N ILE A 3 SHEET 3 A 5 VAL A 61 PRO A 69 -1 O VAL A 61 N MET A 17 SHEET 4 A 5 TYR A 155 ASN A 163 -1 O TRP A 160 N PHE A 64 SHEET 5 A 5 SER A 83 GLU A 86 -1 N ASN A 85 O PHE A 159 SHEET 1 B 5 LYS B 2 ILE B 5 0 SHEET 2 B 5 GLY B 9 MET B 17 -1 O VAL B 11 N ILE B 3 SHEET 3 B 5 VAL B 61 PRO B 69 -1 O HIS B 65 N GLU B 12 SHEET 4 B 5 TYR B 155 ASN B 163 -1 O TRP B 160 N PHE B 64 SHEET 5 B 5 SER B 83 GLU B 86 -1 N SER B 83 O THR B 161 SHEET 1 C 5 LYS C 2 ILE C 5 0 SHEET 2 C 5 GLY C 9 MET C 17 -1 O GLY C 9 N ILE C 5 SHEET 3 C 5 VAL C 61 PRO C 69 -1 O HIS C 65 N GLU C 12 SHEET 4 C 5 TYR C 155 ASN C 163 -1 O TRP C 160 N PHE C 64 SHEET 5 C 5 SER C 83 GLU C 86 -1 N SER C 83 O THR C 161 SHEET 1 D 5 LYS D 2 ILE D 5 0 SHEET 2 D 5 GLY D 9 MET D 17 -1 O VAL D 11 N ILE D 3 SHEET 3 D 5 VAL D 61 PRO D 69 -1 O VAL D 61 N MET D 17 SHEET 4 D 5 TYR D 155 ASN D 163 -1 O THR D 156 N ALA D 68 SHEET 5 D 5 SER D 83 GLU D 86 -1 N SER D 83 O THR D 161 SITE 1 AC1 23 SER A 83 ASN A 85 GLU A 86 TYR A 91 SITE 2 AC1 23 HOH A 325 BRU A 603 SER B 30 THR B 55 SITE 3 AC1 23 GLU B 58 ASN B 163 ARG B 165 HOH B 396 SITE 4 AC1 23 FAD B 610 ARG D 78 HIS D 79 ARG D 80 SITE 5 AC1 23 ILE D 81 ASN D 169 LEU D 173 ARG D 174 SITE 6 AC1 23 HIS D 178 HOH D 303 HOH D 366 SITE 1 AC2 13 GLU A 86 LEU A 87 SER A 88 GLY A 89 SITE 2 AC2 13 ARG A 90 TYR A 91 ARG A 147 HOH A 368 SITE 3 AC2 13 HOH A 390 GLN D 75 ARG D 78 ARG D 174 SITE 4 AC2 13 FAD D 600 SITE 1 AC3 22 SER A 30 THR A 55 GLU A 58 ILE A 81 SITE 2 AC3 22 ASN A 163 ARG A 165 FAD A 615 ASN B 85 SITE 3 AC3 22 GLU B 86 TYR B 91 BRU B 608 ARG C 78 SITE 4 AC3 22 HIS C 79 ARG C 80 ILE C 81 ASN C 169 SITE 5 AC3 22 LEU C 173 HIS C 178 HOH C 304 HOH C 323 SITE 6 AC3 22 HOH C 418 HOH C 456 SITE 1 AC4 15 GLU B 86 LEU B 87 SER B 88 GLY B 89 SITE 2 AC4 15 ARG B 90 TYR B 91 ARG B 147 HOH B 305 SITE 3 AC4 15 HOH B 393 ARG C 74 GLN C 75 ARG C 78 SITE 4 AC4 15 ARG C 174 HOH C 329 FAD C 605 SITE 1 AC5 21 ARG B 78 HIS B 79 ARG B 80 ILE B 81 SITE 2 AC5 21 ASN B 169 LEU B 173 ARG B 174 HIS B 178 SITE 3 AC5 21 HOH B 302 HOH B 319 HOH B 410 ASN C 85 SITE 4 AC5 21 GLU C 86 BRU C 613 SER D 30 THR D 55 SITE 5 AC5 21 GLU D 58 ILE D 81 ASN D 163 ARG D 165 SITE 6 AC5 21 FAD D 600 SITE 1 AC6 13 ARG B 74 GLN B 75 ARG B 78 ARG B 174 SITE 2 AC6 13 FAD B 610 GLU C 86 LEU C 87 SER C 88 SITE 3 AC6 13 GLY C 89 ARG C 90 ARG C 147 HOH C 309 SITE 4 AC6 13 HOH C 376 SITE 1 AC7 20 ARG A 78 HIS A 79 ARG A 80 ILE A 81 SITE 2 AC7 20 ASN A 169 LEU A 173 HIS A 178 HOH A 342 SITE 3 AC7 20 HOH A 472 THR C 55 GLU C 58 ILE C 81 SITE 4 AC7 20 ASN C 163 ARG C 165 FAD C 605 ASN D 85 SITE 5 AC7 20 GLU D 86 TYR D 91 HOH D 443 BRU D 618 SITE 1 AC8 13 ARG A 74 GLN A 75 ARG A 78 ARG A 174 SITE 2 AC8 13 HOH A 335 FAD A 615 GLU D 86 LEU D 87 SITE 3 AC8 13 SER D 88 GLY D 89 ARG D 90 ARG D 147 SITE 4 AC8 13 HOH D 301 CRYST1 54.349 116.428 140.557 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007115 0.00000