HEADER TRANSFERASE 18-FEB-03 1O29 TITLE CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN TITLE 2 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND FDUMP AT 2.0 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE THYX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TS, TSASE, THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0449; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0449, THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JCSG, JOINT CENTER FOR STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.I.MATHEWS,A.M.DEACON,J.M.CANAVES,D.MCMULLAN,S.A.LESLEY,S.AGARWALLA, AUTHOR 2 P.KUHN,JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 20-SEP-23 1O29 1 REMARK REVDAT 6 25-JAN-23 1O29 1 REMARK SEQADV REVDAT 5 18-JUL-18 1O29 1 REMARK REVDAT 4 04-OCT-17 1O29 1 REMARK REVDAT 3 24-FEB-09 1O29 1 VERSN REVDAT 2 14-NOV-06 1O29 1 AUTHOR KEYWDS REVDAT 1 24-JUN-03 1O29 0 JRNL AUTH I.I.MATHEWS,A.M.DEACON,J.M.CANAVES,D.MCMULLAN,S.A.LESLEY, JRNL AUTH 2 S.AGARWALLA,P.KUHN JRNL TITL FUNCTIONAL ANALYSIS OF SUBSTRATE AND COFACTOR COMPLEX JRNL TITL 2 STRUCTURES OF A THYMIDYLATE SYNTHASE-COMPLEMENTING PROTEIN JRNL REF STRUCTURE V. 11 677 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12791256 JRNL DOI 10.1016/S0969-2126(03)00097-2 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 61604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3129 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1097 REMARK 3 BIN R VALUE (WORKING SET) : 0.2454 REMARK 3 BIN FREE R VALUE : 0.2838 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.32 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 74 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7266 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 296 REMARK 3 SOLVENT ATOMS : 428 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.73300 REMARK 3 B22 (A**2) : 2.67000 REMARK 3 B33 (A**2) : 1.06400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.190 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.277 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.993 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.996 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT CORRECTION REMARK 3 KSOL : 43.31 REMARK 3 BSOL : 0.36 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000001713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : FLAT MIRROR,SINGLE CRYSTAL REMARK 200 SI(311) BENT MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71914 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.129 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.75000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: 1KQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 47% PEG 200, 0.1M TRIS-HCL, PH 8.0, REMARK 280 VAPOR DIFFUSION,HANGING DROP, TEMPERATURE 295K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.31800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.96300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.47750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.96300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.31800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.47750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 VAL A 218 REMARK 465 GLN A 219 REMARK 465 VAL A 220 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 ASP C 32 REMARK 465 MET C 33 REMARK 465 GLY C 34 REMARK 465 LEU C 35 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 ASP D -8 REMARK 465 LYS D -7 REMARK 465 ILE D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 GLY D 34 REMARK 465 LEU D 35 REMARK 465 LYS D 36 REMARK 465 GLN D 219 REMARK 465 VAL D 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -155.52 55.76 REMARK 500 LYS A 36 -144.43 -139.38 REMARK 500 THR A 112 -71.36 -44.80 REMARK 500 LEU B 6 -153.40 56.50 REMARK 500 LYS B 8 -1.22 -141.82 REMARK 500 LYS B 36 -96.20 -131.46 REMARK 500 LEU C 6 -144.49 58.41 REMARK 500 LEU D 6 -145.32 55.86 REMARK 500 SER D 30 -32.77 -153.01 REMARK 500 GLU D 217 -1.36 -151.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP B 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP C 813 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 815 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP D 818 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O24 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA AT 2.0 A RESOLUTION REMARK 900 RELATED ID: 1O25 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH DUMP AT 2.4 A RESOLUTION REMARK 900 RELATED ID: 1O26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND DUMP AT 1.6 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O27 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND BRDUMP AT 2.3 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O28 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FDUMP AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 1O2A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AT 1.8 A RESOLUTION REMARK 900 RELATED ID: 1O2B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND PO4 AT 2.45 A REMARK 900 RESOLUTION DBREF 1O29 A 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O29 B 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O29 C 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O29 D 1 220 UNP Q9WYT0 THYX_THEMA 1 220 SEQADV 1O29 MET A -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 GLY A -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 SER A -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 ASP A -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 LYS A -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 ILE A -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS A -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS A -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS A -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS A -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS A -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS A 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 MET B -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 GLY B -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 SER B -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 ASP B -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 LYS B -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 ILE B -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS B -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS B -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS B -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS B -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS B -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS B 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 MET C -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 GLY C -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 SER C -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 ASP C -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 LYS C -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 ILE C -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS C -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS C -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS C -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS C -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS C -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS C 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 MET D -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 GLY D -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 SER D -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 ASP D -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 LYS D -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 ILE D -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS D -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS D -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS D -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS D -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS D -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O29 HIS D 0 UNP Q9WYT0 EXPRESSION TAG SEQRES 1 A 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 A 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 A 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 A 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 A 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 A 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 A 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 A 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 A 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 A 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 A 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 A 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 A 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 A 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 A 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 A 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 A 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 B 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 B 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 B 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 B 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 B 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 B 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 B 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 B 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 B 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 B 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 B 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 B 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 B 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 B 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 B 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 B 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 B 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 C 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 C 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 C 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 C 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 C 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 C 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 C 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 C 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 C 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 C 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 C 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 C 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 C 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 C 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 C 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 C 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 C 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 D 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 D 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 D 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 D 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 D 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 D 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 D 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 D 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 D 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 D 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 D 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 D 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 D 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 D 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 D 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 D 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 D 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 D 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL HET UFP A 803 21 HET FAD A 815 53 HET UFP B 808 21 HET FAD B 810 53 HET FAD C 805 53 HET UFP C 813 21 HET FAD D 800 53 HET UFP D 818 21 HETNAM UFP 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 5 UFP 4(C9 H12 F N2 O8 P) FORMUL 6 FAD 4(C27 H33 N9 O15 P2) FORMUL 13 HOH *428(H2 O) HELIX 1 1 ASN A 19 VAL A 29 1 11 HELIX 2 2 SER A 30 ASP A 32 5 3 HELIX 3 3 ASP A 37 HIS A 51 1 15 HELIX 4 4 GLU A 54 HIS A 59 5 6 HELIX 5 5 ILE A 70 PHE A 77 1 8 HELIX 6 6 SER A 102 GLU A 107 5 6 HELIX 7 7 PRO A 114 GLY A 140 1 27 HELIX 8 8 PRO A 142 ARG A 147 1 6 HELIX 9 9 ILE A 148 LEU A 150 5 3 HELIX 10 10 ALA A 164 ALA A 175 1 12 HELIX 11 11 GLN A 180 CYS A 198 1 19 HELIX 12 12 CYS A 198 ALA A 209 1 12 HELIX 13 13 ASN B 19 VAL B 29 1 11 HELIX 14 14 SER B 30 ASP B 32 5 3 HELIX 15 15 ASP B 37 HIS B 51 1 15 HELIX 16 16 GLU B 54 HIS B 59 5 6 HELIX 17 17 ILE B 70 PHE B 77 1 8 HELIX 18 18 SER B 102 GLU B 107 5 6 HELIX 19 19 PRO B 114 SER B 139 1 26 HELIX 20 20 PRO B 142 ARG B 147 1 6 HELIX 21 21 ILE B 148 LEU B 150 5 3 HELIX 22 22 ALA B 164 ALA B 175 1 12 HELIX 23 23 GLN B 180 CYS B 198 1 19 HELIX 24 24 CYS B 198 ALA B 209 1 12 HELIX 25 25 ASP B 213 GLU B 217 5 5 HELIX 26 26 ASN C 19 VAL C 29 1 11 HELIX 27 27 ASP C 37 HIS C 51 1 15 HELIX 28 28 GLU C 54 HIS C 59 5 6 HELIX 29 29 ILE C 70 PHE C 77 1 8 HELIX 30 30 PRO C 114 SER C 139 1 26 HELIX 31 31 PRO C 142 ARG C 147 1 6 HELIX 32 32 ILE C 148 LEU C 150 5 3 HELIX 33 33 ALA C 164 ALA C 175 1 12 HELIX 34 34 GLN C 180 CYS C 198 1 19 HELIX 35 35 CYS C 198 ALA C 209 1 12 HELIX 36 36 ASN D 19 VAL D 29 1 11 HELIX 37 37 ASP D 37 GLY D 52 1 16 HELIX 38 38 GLU D 54 HIS D 59 5 6 HELIX 39 39 ILE D 70 PHE D 77 1 8 HELIX 40 40 SER D 102 GLU D 107 5 6 HELIX 41 41 PRO D 114 GLY D 140 1 27 HELIX 42 42 PRO D 142 ARG D 147 1 6 HELIX 43 43 ILE D 148 LEU D 150 5 3 HELIX 44 44 ALA D 164 ALA D 175 1 12 HELIX 45 45 GLN D 180 CYS D 198 1 19 HELIX 46 46 CYS D 198 ALA D 209 1 12 HELIX 47 47 ASP D 213 GLU D 217 5 5 SHEET 1 A 5 MET A 1 ILE A 5 0 SHEET 2 A 5 GLY A 9 MET A 17 -1 O VAL A 11 N ILE A 3 SHEET 3 A 5 VAL A 61 PRO A 69 -1 O VAL A 61 N MET A 17 SHEET 4 A 5 TYR A 155 ASN A 163 -1 O TRP A 160 N PHE A 64 SHEET 5 A 5 SER A 83 GLU A 86 -1 N ASN A 85 O PHE A 159 SHEET 1 B 5 LYS B 2 ILE B 5 0 SHEET 2 B 5 GLY B 9 MET B 17 -1 O VAL B 11 N ILE B 3 SHEET 3 B 5 VAL B 61 PRO B 69 -1 O HIS B 65 N GLU B 12 SHEET 4 B 5 TYR B 155 ASN B 163 -1 O PHE B 158 N VAL B 66 SHEET 5 B 5 SER B 83 GLU B 86 -1 N ASN B 85 O PHE B 159 SHEET 1 C 5 LYS C 2 ILE C 5 0 SHEET 2 C 5 GLY C 9 MET C 17 -1 O VAL C 11 N ILE C 3 SHEET 3 C 5 VAL C 61 PRO C 69 -1 O VAL C 61 N MET C 17 SHEET 4 C 5 TYR C 155 ASN C 163 -1 O TRP C 160 N PHE C 64 SHEET 5 C 5 SER C 83 GLU C 86 -1 N ASN C 85 O PHE C 159 SHEET 1 D 5 LYS D 2 ILE D 5 0 SHEET 2 D 5 GLY D 9 MET D 17 -1 O VAL D 11 N ILE D 3 SHEET 3 D 5 VAL D 61 PRO D 69 -1 O VAL D 61 N MET D 17 SHEET 4 D 5 TYR D 155 ASN D 163 -1 O TRP D 160 N PHE D 64 SHEET 5 D 5 SER D 83 GLU D 86 -1 N SER D 83 O THR D 161 SITE 1 AC1 26 ASN A 85 GLU A 86 SER A 88 TYR A 91 SITE 2 AC1 26 HOH A 439 UFP A 803 SER B 30 THR B 55 SITE 3 AC1 26 GLU B 58 ILE B 81 ASN B 163 ARG B 165 SITE 4 AC1 26 HOH B 641 FAD B 810 ARG D 78 HIS D 79 SITE 5 AC1 26 ARG D 80 ILE D 81 ASN D 169 LEU D 173 SITE 6 AC1 26 HIS D 178 HOH D 315 HOH D 320 HOH D 371 SITE 7 AC1 26 HOH D 421 HOH D 521 SITE 1 AC2 13 GLU A 86 LEU A 87 SER A 88 GLY A 89 SITE 2 AC2 13 ARG A 90 ARG A 147 HOH A 341 HOH A 563 SITE 3 AC2 13 GLN D 75 ARG D 78 ARG D 174 HOH D 329 SITE 4 AC2 13 FAD D 800 SITE 1 AC3 28 SER A 30 THR A 55 GLU A 58 ILE A 81 SITE 2 AC3 28 ASN A 163 ARG A 165 FAD A 815 ASN B 85 SITE 3 AC3 28 GLU B 86 SER B 88 TYR B 91 HOH B 362 SITE 4 AC3 28 UFP B 808 ARG C 78 HIS C 79 ARG C 80 SITE 5 AC3 28 ILE C 81 ASN C 169 LEU C 173 HIS C 178 SITE 6 AC3 28 HOH C 306 HOH C 358 HOH C 374 HOH C 427 SITE 7 AC3 28 HOH C 447 HOH C 508 HOH C 530 HOH C 687 SITE 1 AC4 14 GLU B 86 LEU B 87 SER B 88 GLY B 89 SITE 2 AC4 14 ARG B 90 TYR B 91 ARG B 147 HOH B 307 SITE 3 AC4 14 HOH B 338 GLN C 75 ARG C 78 ARG C 174 SITE 4 AC4 14 HOH C 347 FAD C 805 SITE 1 AC5 29 ARG B 78 HIS B 79 ARG B 80 ILE B 81 SITE 2 AC5 29 ASN B 169 LEU B 173 ARG B 174 HIS B 178 SITE 3 AC5 29 HOH B 311 HOH B 409 HOH B 434 HOH B 446 SITE 4 AC5 29 HOH B 496 HOH B 515 ASN C 85 GLU C 86 SITE 5 AC5 29 SER C 88 TYR C 91 HOH C 345 UFP C 813 SITE 6 AC5 29 SER D 30 HIS D 53 THR D 55 GLU D 58 SITE 7 AC5 29 ILE D 81 ASN D 163 ARG D 165 HOH D 703 SITE 8 AC5 29 FAD D 800 SITE 1 AC6 14 GLN B 75 ARG B 78 ARG B 174 FAD B 810 SITE 2 AC6 14 GLU C 86 LEU C 87 SER C 88 GLY C 89 SITE 3 AC6 14 ARG C 90 TYR C 91 ARG C 147 HOH C 309 SITE 4 AC6 14 HOH C 407 HOH C 540 SITE 1 AC7 27 ARG A 78 HIS A 79 ARG A 80 ILE A 81 SITE 2 AC7 27 ASN A 169 LEU A 173 ARG A 174 HIS A 178 SITE 3 AC7 27 HOH A 316 HOH A 321 HOH A 381 HOH A 428 SITE 4 AC7 27 HOH A 611 THR C 55 GLU C 58 ILE C 81 SITE 5 AC7 27 ASN C 163 ARG C 165 HOH C 463 FAD C 805 SITE 6 AC7 27 ASN D 85 GLU D 86 SER D 88 TYR D 91 SITE 7 AC7 27 HOH D 353 HOH D 503 UFP D 818 SITE 1 AC8 14 GLN A 75 ARG A 78 ARG A 174 FAD A 815 SITE 2 AC8 14 GLU D 86 LEU D 87 SER D 88 GLY D 89 SITE 3 AC8 14 ARG D 90 TYR D 91 ARG D 147 HOH D 319 SITE 4 AC8 14 HOH D 350 HOH D 383 CRYST1 54.636 116.955 141.926 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018303 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007046 0.00000