HEADER TRANSFERASE 18-FEB-03 1O2B TITLE CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN TITLE 2 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND PO4 AT 2.45 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE THYX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TS, TSASE, THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0449; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0449, THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JCSG, JOINT CENTER FOR STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.I.MATHEWS,A.M.DEACON,J.M.CANAVES,D.MCMULLAN,S.A.LESLEY,S.AGARWALLA, AUTHOR 2 P.KUHN,JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 20-SEP-23 1O2B 1 REMARK REVDAT 6 25-JAN-23 1O2B 1 REMARK SEQADV REVDAT 5 18-JUL-18 1O2B 1 REMARK REVDAT 4 04-OCT-17 1O2B 1 REMARK REVDAT 3 24-FEB-09 1O2B 1 VERSN REVDAT 2 14-NOV-06 1O2B 1 AUTHOR KEYWDS REVDAT 1 24-JUN-03 1O2B 0 JRNL AUTH I.I.MATHEWS,A.M.DEACON,J.M.CANAVES,D.MCMULLAN,S.A.LESLEY, JRNL AUTH 2 S.AGARWALLA,P.KUHN JRNL TITL FUNCTIONAL ANALYSIS OF SUBSTRATE AND COFACTOR COMPLEX JRNL TITL 2 STRUCTURES OF A THYMIDYLATE SYNTHASE-COMPLEMENTING PROTEIN JRNL REF STRUCTURE V. 11 677 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12791256 JRNL DOI 10.1016/S0969-2126(03)00097-2 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 33130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1639 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 32 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 763 REMARK 3 BIN R VALUE (WORKING SET) : 0.3058 REMARK 3 BIN FREE R VALUE : 0.3676 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.78 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 30 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 227 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.44700 REMARK 3 B22 (A**2) : 6.08500 REMARK 3 B33 (A**2) : 3.36200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.320 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.248 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.084 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.829 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.780 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT CORRECTION REMARK 3 KSOL : 52.06 REMARK 3 BSOL : 0.35 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000001715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94641 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : FLAT MIRROR,SINGLE CRYSTAL REMARK 200 SI(311) BENT MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33811 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 47.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: 1KQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45 PEG 200, 0.1M HEPES, PH 7.5, 8MM REMARK 280 SODIUM, VAPOR DIFFUSION,HANGING DROP, TEMPERATURE 295K, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.49550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.49550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 34 REMARK 465 LEU A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 216 REMARK 465 GLU A 217 REMARK 465 VAL A 218 REMARK 465 GLN A 219 REMARK 465 VAL A 220 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 34 REMARK 465 LEU B 35 REMARK 465 LYS B 36 REMARK 465 ASP B 37 REMARK 465 GLU B 38 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 ASP C 32 REMARK 465 MET C 33 REMARK 465 GLY C 34 REMARK 465 LEU C 35 REMARK 465 LYS C 93 REMARK 465 LEU C 94 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 ASP D -8 REMARK 465 LYS D -7 REMARK 465 ILE D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 ASP D 32 REMARK 465 MET D 33 REMARK 465 GLY D 34 REMARK 465 LEU D 35 REMARK 465 LYS D 36 REMARK 465 LYS D 93 REMARK 465 GLN D 219 REMARK 465 VAL D 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CB CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 37 CB CG OD1 OD2 REMARK 470 GLU A 38 CB CG CD OE1 OE2 REMARK 470 GLU A 39 CB CG CD OE1 OE2 REMARK 470 ARG D 90 CB CG CD NE CZ NH1 NH2 REMARK 470 SER D 92 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -156.94 60.32 REMARK 500 TYR A 96 70.50 -54.24 REMARK 500 GLU A 107 83.53 -67.88 REMARK 500 ALA A 209 -34.01 -162.74 REMARK 500 ASP A 213 14.01 -151.96 REMARK 500 LEU B 6 -149.39 49.72 REMARK 500 ASN B 19 -162.86 -163.15 REMARK 500 ASP B 32 -30.69 67.39 REMARK 500 LEU C 6 -150.66 55.65 REMARK 500 LYS C 8 10.56 -150.39 REMARK 500 PHE C 77 -3.74 -58.12 REMARK 500 ALA C 82 172.69 178.44 REMARK 500 TYR C 91 -55.41 -146.91 REMARK 500 TYR C 96 59.72 -65.27 REMARK 500 ASP C 213 -50.03 -124.19 REMARK 500 LEU D 6 -140.83 58.83 REMARK 500 LYS D 8 15.99 -148.11 REMARK 500 TYR D 91 -46.73 -137.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD C 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 615 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O24 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA AT 2.0 A RESOLUTION REMARK 900 RELATED ID: 1O25 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH DUMP AT 2.4 A RESOLUTION REMARK 900 RELATED ID: 1O26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND DUMP AT 1.6 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O27 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND BRDUMP AT 2.3 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O28 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FDUMP AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 1O29 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AND FDUMP AT 2.0 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 1O2A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE COMPLEMENTING PROTEIN REMARK 900 (TM0449) FROM THERMOTOGA MARITIMA WITH FAD AT 1.8 A RESOLUTION DBREF 1O2B A 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O2B B 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O2B C 1 220 UNP Q9WYT0 THYX_THEMA 1 220 DBREF 1O2B D 1 220 UNP Q9WYT0 THYX_THEMA 1 220 SEQADV 1O2B MET A -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B GLY A -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B SER A -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B ASP A -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B LYS A -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B ILE A -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS A -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS A -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS A -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS A -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS A -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS A 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B MET B -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B GLY B -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B SER B -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B ASP B -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B LYS B -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B ILE B -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS B -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS B -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS B -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS B -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS B -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS B 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B MET C -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B GLY C -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B SER C -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B ASP C -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B LYS C -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B ILE C -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS C -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS C -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS C -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS C -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS C -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS C 0 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B MET D -11 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B GLY D -10 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B SER D -9 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B ASP D -8 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B LYS D -7 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B ILE D -6 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS D -5 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS D -4 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS D -3 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS D -2 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS D -1 UNP Q9WYT0 EXPRESSION TAG SEQADV 1O2B HIS D 0 UNP Q9WYT0 EXPRESSION TAG SEQRES 1 A 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 A 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 A 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 A 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 A 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 A 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 A 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 A 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 A 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 A 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 A 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 A 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 A 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 A 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 A 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 A 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 A 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 B 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 B 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 B 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 B 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 B 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 B 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 B 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 B 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 B 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 B 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 B 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 B 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 B 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 B 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 B 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 B 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 B 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 C 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 C 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 C 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 C 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 C 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 C 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 C 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 C 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 C 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 C 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 C 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 C 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 C 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 C 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 C 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 C 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 C 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL SEQRES 1 D 232 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 D 232 LYS ILE ASP ILE LEU ASP LYS GLY PHE VAL GLU LEU VAL SEQRES 3 D 232 ASP VAL MET GLY ASN ASP LEU SER ALA VAL ARG ALA ALA SEQRES 4 D 232 ARG VAL SER PHE ASP MET GLY LEU LYS ASP GLU GLU ARG SEQRES 5 D 232 ASP ARG HIS LEU ILE GLU TYR LEU MET LYS HIS GLY HIS SEQRES 6 D 232 GLU THR PRO PHE GLU HIS ILE VAL PHE THR PHE HIS VAL SEQRES 7 D 232 LYS ALA PRO ILE PHE VAL ALA ARG GLN TRP PHE ARG HIS SEQRES 8 D 232 ARG ILE ALA SER TYR ASN GLU LEU SER GLY ARG TYR SER SEQRES 9 D 232 LYS LEU SER TYR GLU PHE TYR ILE PRO SER PRO GLU ARG SEQRES 10 D 232 LEU GLU GLY TYR LYS THR THR ILE PRO PRO GLU ARG VAL SEQRES 11 D 232 THR GLU LYS ILE SER GLU ILE VAL ASP LYS ALA TYR ARG SEQRES 12 D 232 THR TYR LEU GLU LEU ILE GLU SER GLY VAL PRO ARG GLU SEQRES 13 D 232 VAL ALA ARG ILE VAL LEU PRO LEU ASN LEU TYR THR ARG SEQRES 14 D 232 PHE PHE TRP THR VAL ASN ALA ARG SER LEU MET ASN PHE SEQRES 15 D 232 LEU ASN LEU ARG ALA ASP SER HIS ALA GLN TRP GLU ILE SEQRES 16 D 232 GLN GLN TYR ALA LEU ALA ILE ALA ARG ILE PHE LYS GLU SEQRES 17 D 232 LYS CYS PRO TRP THR PHE GLU ALA PHE LEU LYS TYR ALA SEQRES 18 D 232 TYR LYS GLY ASP ILE LEU LYS GLU VAL GLN VAL HET PO4 A 603 5 HET FAD A 615 53 HET PO4 B 608 5 HET FAD B 610 53 HET FAD C 605 53 HET PO4 D 618 5 HET FAD D 600 53 HETNAM PO4 PHOSPHATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 5 PO4 3(O4 P 3-) FORMUL 6 FAD 4(C27 H33 N9 O15 P2) FORMUL 12 HOH *240(H2 O) HELIX 1 1 ASN A 19 VAL A 29 1 11 HELIX 2 2 ASP A 37 HIS A 51 1 15 HELIX 3 3 GLU A 54 HIS A 59 5 6 HELIX 4 4 ILE A 70 PHE A 77 1 8 HELIX 5 5 SER A 102 GLU A 107 5 6 HELIX 6 6 PRO A 114 SER A 139 1 26 HELIX 7 7 PRO A 142 ARG A 147 1 6 HELIX 8 8 ILE A 148 LEU A 150 5 3 HELIX 9 9 ALA A 164 ALA A 175 1 12 HELIX 10 10 GLN A 180 CYS A 198 1 19 HELIX 11 11 CYS A 198 ALA A 209 1 12 HELIX 12 12 ASN B 19 VAL B 29 1 11 HELIX 13 13 SER B 30 ASP B 32 5 3 HELIX 14 14 GLU B 39 GLY B 52 1 14 HELIX 15 15 GLU B 54 HIS B 59 5 6 HELIX 16 16 ILE B 70 PHE B 77 1 8 HELIX 17 17 SER B 102 LEU B 106 5 5 HELIX 18 18 PRO B 114 SER B 139 1 26 HELIX 19 19 PRO B 142 ARG B 147 1 6 HELIX 20 20 ILE B 148 LEU B 150 5 3 HELIX 21 21 ALA B 164 ALA B 175 1 12 HELIX 22 22 GLN B 180 CYS B 198 1 19 HELIX 23 23 CYS B 198 ALA B 209 1 12 HELIX 24 24 ASP B 213 GLU B 217 5 5 HELIX 25 25 ASP C 20 VAL C 29 1 10 HELIX 26 26 ASP C 37 HIS C 51 1 15 HELIX 27 27 GLU C 54 HIS C 59 5 6 HELIX 28 28 ILE C 70 PHE C 77 1 8 HELIX 29 29 SER C 102 GLU C 107 5 6 HELIX 30 30 PRO C 114 GLY C 140 1 27 HELIX 31 31 PRO C 142 ARG C 147 1 6 HELIX 32 32 ILE C 148 LEU C 150 5 3 HELIX 33 33 ALA C 164 ALA C 175 1 12 HELIX 34 34 GLN C 180 CYS C 198 1 19 HELIX 35 35 CYS C 198 ALA C 209 1 12 HELIX 36 36 ASP C 213 GLU C 217 5 5 HELIX 37 37 ASN D 19 VAL D 29 1 11 HELIX 38 38 ASP D 37 GLY D 52 1 16 HELIX 39 39 GLU D 54 HIS D 59 5 6 HELIX 40 40 ILE D 70 PHE D 77 1 8 HELIX 41 41 SER D 102 GLU D 107 5 6 HELIX 42 42 PRO D 114 GLU D 138 1 25 HELIX 43 43 PRO D 142 ARG D 147 1 6 HELIX 44 44 ILE D 148 LEU D 150 5 3 HELIX 45 45 ALA D 164 ALA D 175 1 12 HELIX 46 46 GLN D 180 CYS D 198 1 19 HELIX 47 47 CYS D 198 ALA D 209 1 12 HELIX 48 48 ASP D 213 VAL D 218 5 6 SHEET 1 A 5 LYS A 2 ILE A 5 0 SHEET 2 A 5 GLY A 9 MET A 17 -1 O VAL A 11 N ILE A 3 SHEET 3 A 5 VAL A 61 PRO A 69 -1 O LYS A 67 N PHE A 10 SHEET 4 A 5 TYR A 155 ASN A 163 -1 O TRP A 160 N PHE A 64 SHEET 5 A 5 SER A 83 GLU A 86 -1 N SER A 83 O THR A 161 SHEET 1 B 5 LYS B 2 ILE B 5 0 SHEET 2 B 5 GLY B 9 MET B 17 -1 O VAL B 11 N ILE B 3 SHEET 3 B 5 VAL B 61 PRO B 69 -1 O HIS B 65 N GLU B 12 SHEET 4 B 5 TYR B 155 ASN B 163 -1 O PHE B 158 N VAL B 66 SHEET 5 B 5 SER B 83 GLU B 86 -1 N ASN B 85 O PHE B 159 SHEET 1 C 5 LYS C 2 ILE C 5 0 SHEET 2 C 5 GLY C 9 MET C 17 -1 O VAL C 11 N ILE C 3 SHEET 3 C 5 VAL C 61 PRO C 69 -1 O HIS C 65 N GLU C 12 SHEET 4 C 5 TYR C 155 ASN C 163 -1 O THR C 156 N ALA C 68 SHEET 5 C 5 SER C 83 GLU C 86 -1 N SER C 83 O THR C 161 SHEET 1 D 5 LYS D 2 ILE D 5 0 SHEET 2 D 5 GLY D 9 MET D 17 -1 O GLY D 9 N ILE D 5 SHEET 3 D 5 VAL D 61 PRO D 69 -1 O VAL D 61 N MET D 17 SHEET 4 D 5 TYR D 155 ASN D 163 -1 O THR D 156 N ALA D 68 SHEET 5 D 5 SER D 83 GLU D 86 -1 N SER D 83 O THR D 161 SITE 1 AC1 6 SER A 88 GLY A 89 ARG A 90 ARG A 147 SITE 2 AC1 6 HOH A 458 HOH A 531 SITE 1 AC2 8 SER B 88 GLY B 89 ARG B 90 ARG B 147 SITE 2 AC2 8 HOH B 351 HOH B 522 ARG C 74 GLN C 75 SITE 1 AC3 4 ARG A 74 ARG D 147 HOH D 467 HOH D 474 SITE 1 AC4 18 ASN A 85 GLU A 86 SER B 30 GLU B 58 SITE 2 AC4 18 ILE B 81 ASN B 163 ARG B 165 FAD B 610 SITE 3 AC4 18 ARG D 78 HIS D 79 ARG D 80 ILE D 81 SITE 4 AC4 18 ASN D 169 LEU D 173 ARG D 174 HIS D 178 SITE 5 AC4 18 HOH D 302 HOH D 306 SITE 1 AC5 25 SER A 30 THR A 55 GLU A 58 ILE A 81 SITE 2 AC5 25 ASN A 163 ARG A 165 SER A 166 HOH A 412 SITE 3 AC5 25 FAD A 615 ASN B 85 GLU B 86 SER B 88 SITE 4 AC5 25 TYR B 91 ARG C 78 HIS C 79 ARG C 80 SITE 5 AC5 25 ILE C 81 ASN C 169 LEU C 173 ARG C 174 SITE 6 AC5 25 HIS C 178 HOH C 305 HOH C 447 HOH C 513 SITE 7 AC5 25 HOH C 525 SITE 1 AC6 19 ARG B 78 HIS B 79 ARG B 80 ILE B 81 SITE 2 AC6 19 ASN B 169 LEU B 173 ARG B 174 HIS B 178 SITE 3 AC6 19 HOH B 309 HOH B 331 HOH B 446 ASN C 85 SITE 4 AC6 19 GLU C 86 SER C 88 THR D 55 GLU D 58 SITE 5 AC6 19 ASN D 163 ARG D 165 FAD D 600 SITE 1 AC7 17 ARG A 78 HIS A 79 ARG A 80 ILE A 81 SITE 2 AC7 17 ASN A 169 LEU A 173 ARG A 174 HOH A 328 SITE 3 AC7 17 THR C 55 GLU C 58 ILE C 81 ASN C 163 SITE 4 AC7 17 ARG C 165 FAD C 605 ASN D 85 GLU D 86 SITE 5 AC7 17 SER D 88 CRYST1 54.991 118.150 145.400 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006878 0.00000