data_1O3U # _entry.id 1O3U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O3U pdb_00001o3u 10.2210/pdb1o3u/pdb RCSB RCSB001770 ? ? WWPDB D_1000001770 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 282486 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1O3U _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2003-03-28 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of an HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 A resolution.' _citation.journal_abbrev PROTEINS _citation.journal_volume 54 _citation.page_first 806 _citation.page_last 809 _citation.year 2004 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14997578 _citation.pdbx_database_id_DOI 10.1002/prot.10631 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Erlandsen, H.' 1 ? primary 'Canaves, J.M.' 2 ? primary 'Elsliger, M.A.' 3 ? primary 'von Delft, F.' 4 ? primary 'Brinen, L.S.' 5 ? primary 'Dai, X.' 6 ? primary 'Deacon, A.M.' 7 ? primary 'Floyd, R.' 8 ? primary 'Godzik, A.' 9 ? primary 'Grittini, C.' 10 ? primary 'Grzechnik, S.K.' 11 ? primary 'Jaroszewski, L.' 12 ? primary 'Klock, H.E.' 13 ? primary 'Koesema, E.' 14 ? primary 'Kovarik, J.S.' 15 ? primary 'Kreusch, A.' 16 ? primary 'Kuhn, P.' 17 ? primary 'Lesley, S.A.' 18 ? primary 'McMullan, D.' 19 ? primary 'McPhillips, T.M.' 20 ? primary 'Miller, M.D.' 21 ? primary 'Morse, A.' 22 ? primary 'Moy, K.' 23 ? primary 'Ouyang, J.' 24 ? primary 'Page, R.' 25 ? primary 'Robb, A.' 26 ? primary 'Quijano, K.' 27 ? primary 'Schwarzenbacher, R.' 28 ? primary 'Spraggon, G.' 29 ? primary 'Stevens, R.C.' 30 ? primary 'van den Bedem, H.' 31 ? primary 'Velasquez, J.' 32 ? primary 'Vincent, J.' 33 ? primary 'Wang, X.' 34 ? primary 'West, B.' 35 ? primary 'Wolf, G.' 36 ? primary 'Hodgson, K.O.' 37 ? primary 'Wooley, J.' 38 ? primary 'Wilson, I.A.' 39 ? # _cell.length_a 57.922 _cell.length_b 57.922 _cell.length_c 63.735 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 1O3U _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 1O3U _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'conserved hypothetical protein TM0613' 15622.404 1 ? ? ? ? 2 water nat water 18.015 128 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MGSDKIHHHHHHMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQR(MSE)GAQAWGYSVPDFLGELSSRFEI PEELMDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFCEDLLSRI ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQRMGAQAWGYSVPDFLGELSSRFEIPEEL MDHALELDKACIPTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFCEDLLSRI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 282486 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MET n 1 14 ASP n 1 15 ALA n 1 16 ALA n 1 17 LYS n 1 18 ASP n 1 19 ASP n 1 20 LEU n 1 21 GLU n 1 22 HIS n 1 23 ALA n 1 24 LYS n 1 25 HIS n 1 26 ASP n 1 27 LEU n 1 28 GLU n 1 29 HIS n 1 30 GLY n 1 31 PHE n 1 32 TYR n 1 33 ASN n 1 34 TRP n 1 35 ALA n 1 36 CYS n 1 37 PHE n 1 38 SER n 1 39 SER n 1 40 GLN n 1 41 GLN n 1 42 ALA n 1 43 ALA n 1 44 GLU n 1 45 LYS n 1 46 ALA n 1 47 VAL n 1 48 LYS n 1 49 ALA n 1 50 VAL n 1 51 PHE n 1 52 GLN n 1 53 ARG n 1 54 MSE n 1 55 GLY n 1 56 ALA n 1 57 GLN n 1 58 ALA n 1 59 TRP n 1 60 GLY n 1 61 TYR n 1 62 SER n 1 63 VAL n 1 64 PRO n 1 65 ASP n 1 66 PHE n 1 67 LEU n 1 68 GLY n 1 69 GLU n 1 70 LEU n 1 71 SER n 1 72 SER n 1 73 ARG n 1 74 PHE n 1 75 GLU n 1 76 ILE n 1 77 PRO n 1 78 GLU n 1 79 GLU n 1 80 LEU n 1 81 MET n 1 82 ASP n 1 83 HIS n 1 84 ALA n 1 85 LEU n 1 86 GLU n 1 87 LEU n 1 88 ASP n 1 89 LYS n 1 90 ALA n 1 91 CYS n 1 92 ILE n 1 93 PRO n 1 94 THR n 1 95 ARG n 1 96 TYR n 1 97 PRO n 1 98 ASP n 1 99 ALA n 1 100 LEU n 1 101 PRO n 1 102 SER n 1 103 GLY n 1 104 SER n 1 105 PRO n 1 106 ARG n 1 107 ASN n 1 108 ARG n 1 109 TYR n 1 110 SER n 1 111 ARG n 1 112 ILE n 1 113 GLU n 1 114 ALA n 1 115 GLU n 1 116 ARG n 1 117 LEU n 1 118 VAL n 1 119 ASN n 1 120 TYR n 1 121 ALA n 1 122 GLU n 1 123 LYS n 1 124 ILE n 1 125 ILE n 1 126 ARG n 1 127 PHE n 1 128 CYS n 1 129 GLU n 1 130 ASP n 1 131 LEU n 1 132 LEU n 1 133 SER n 1 134 ARG n 1 135 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM0613 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9WZ82_THEMA _struct_ref.pdbx_db_accession Q9WZ82 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQRMGAQAWGYSVPDFLGELSSRFEIPEELMDHALELDKACI PTRYPDALPSGSPRNRYSRIEAERLVNYAEKIIRFCEDLLSRI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O3U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 135 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WZ82 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 123 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 123 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1O3U MET A 1 ? UNP Q9WZ82 ? ? 'expression tag' -11 1 1 1O3U GLY A 2 ? UNP Q9WZ82 ? ? 'expression tag' -10 2 1 1O3U SER A 3 ? UNP Q9WZ82 ? ? 'expression tag' -9 3 1 1O3U ASP A 4 ? UNP Q9WZ82 ? ? 'expression tag' -8 4 1 1O3U LYS A 5 ? UNP Q9WZ82 ? ? 'expression tag' -7 5 1 1O3U ILE A 6 ? UNP Q9WZ82 ? ? 'expression tag' -6 6 1 1O3U HIS A 7 ? UNP Q9WZ82 ? ? 'expression tag' -5 7 1 1O3U HIS A 8 ? UNP Q9WZ82 ? ? 'expression tag' -4 8 1 1O3U HIS A 9 ? UNP Q9WZ82 ? ? 'expression tag' -3 9 1 1O3U HIS A 10 ? UNP Q9WZ82 ? ? 'expression tag' -2 10 1 1O3U HIS A 11 ? UNP Q9WZ82 ? ? 'expression tag' -1 11 1 1O3U HIS A 12 ? UNP Q9WZ82 ? ? 'expression tag' 0 12 1 1O3U MSE A 54 ? UNP Q9WZ82 MET 42 'modified residue' 42 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1O3U _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.74 _exptl_crystal.density_percent_sol 28.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.00 _exptl_crystal_grow.pdbx_details '10% PEG 8000; Imidazole pH 8.0; 0.2 M Ca(Ac)2, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 8.00' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 2002-12-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE-CRYSTAL SI(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97910 1.0 2 0.97930 1.0 3 0.91840 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97910, 0.97930, 0.91840' # _reflns.entry_id 1O3U _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.904 _reflns.d_resolution_high 1.750 _reflns.number_obs 10935 _reflns.number_all ? _reflns.percent_possible_obs 95.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.076 _reflns.pdbx_netI_over_sigmaI 16.5000 _reflns.B_iso_Wilson_estimate 27.98 _reflns.pdbx_redundancy 5.100 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.80 _reflns_shell.percent_possible_all 72.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.417 _reflns_shell.meanI_over_sigI_obs 2.200 _reflns_shell.pdbx_redundancy 2.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1O3U _refine.ls_number_reflns_obs 9855 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.90 _refine.ls_d_res_high 1.75 _refine.ls_percent_reflns_obs 95.5 _refine.ls_R_factor_obs 0.185 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.900 _refine.ls_number_reflns_R_free 1079 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.B_iso_mean 16.26 _refine.aniso_B[1][1] -0.44000 _refine.aniso_B[2][2] -0.44000 _refine.aniso_B[3][3] 0.87000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.147 _refine.pdbx_overall_ESU_R_Free 0.146 _refine.overall_SU_ML 0.095 _refine.overall_SU_B 6.266 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 963 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 1091 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 25.90 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 993 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 859 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.255 1.932 ? 1338 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.787 3.000 ? 1999 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.846 5.000 ? 118 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.000 23.889 ? 54 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.712 15.000 ? 168 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.450 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.076 0.200 ? 136 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1117 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 212 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 246 'X-RAY DIFFRACTION' ? r_nbd_other 0.235 0.200 ? 956 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.086 0.200 ? 578 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.194 0.200 ? 65 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.166 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.308 0.200 ? 49 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.149 0.200 ? 29 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.936 1.500 ? 599 'X-RAY DIFFRACTION' ? r_mcangle_it 1.813 2.000 ? 950 'X-RAY DIFFRACTION' ? r_scbond_it 3.051 3.000 ? 394 'X-RAY DIFFRACTION' ? r_scangle_it 5.162 4.500 ? 388 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.75 _refine_ls_shell.d_res_low 1.79 _refine_ls_shell.number_reflns_R_work 524 _refine_ls_shell.R_factor_R_work 0.242 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.323 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1O3U _struct.title 'Crystal structure of an hepn domain protein (tm0613) from thermotoga maritima at 1.75 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, unknown function' _struct_keywords.entry_id 1O3U _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 10 ? HIS A 29 ? HIS A -2 HIS A 17 1 ? 20 HELX_P HELX_P2 2 PHE A 31 ? GLY A 55 ? PHE A 19 GLY A 43 1 ? 25 HELX_P HELX_P3 3 SER A 62 ? SER A 71 ? SER A 50 SER A 59 1 ? 10 HELX_P HELX_P4 4 PRO A 77 ? LYS A 89 ? PRO A 65 LYS A 77 1 ? 13 HELX_P HELX_P5 5 GLY A 103 ? SER A 133 ? GLY A 91 SER A 121 1 ? 31 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 36 SG A ? ? 1_555 A CYS 91 SG ? ? A CYS 24 A CYS 79 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf2 disulf ? ? A CYS 36 SG B ? ? 1_555 A CYS 91 SG ? ? A CYS 24 A CYS 79 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale both ? A ARG 53 C ? ? ? 1_555 A MSE 54 N ? ? A ARG 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A MSE 54 C ? ? ? 1_555 A GLY 55 N ? ? A MSE 42 A GLY 43 1_555 ? ? ? ? ? ? ? 1.329 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _atom_sites.entry_id 1O3U _atom_sites.fract_transf_matrix[1][1] 0.017265 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017265 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015690 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MET 13 1 1 MET MET A . n A 1 14 ASP 14 2 2 ASP ASP A . n A 1 15 ALA 15 3 3 ALA ALA A . n A 1 16 ALA 16 4 4 ALA ALA A . n A 1 17 LYS 17 5 5 LYS LYS A . n A 1 18 ASP 18 6 6 ASP ASP A . n A 1 19 ASP 19 7 7 ASP ASP A . n A 1 20 LEU 20 8 8 LEU LEU A . n A 1 21 GLU 21 9 9 GLU GLU A . n A 1 22 HIS 22 10 10 HIS HIS A . n A 1 23 ALA 23 11 11 ALA ALA A . n A 1 24 LYS 24 12 12 LYS LYS A . n A 1 25 HIS 25 13 13 HIS HIS A . n A 1 26 ASP 26 14 14 ASP ASP A . n A 1 27 LEU 27 15 15 LEU LEU A . n A 1 28 GLU 28 16 16 GLU GLU A . n A 1 29 HIS 29 17 17 HIS HIS A . n A 1 30 GLY 30 18 18 GLY GLY A . n A 1 31 PHE 31 19 19 PHE PHE A . n A 1 32 TYR 32 20 20 TYR TYR A . n A 1 33 ASN 33 21 21 ASN ASN A . n A 1 34 TRP 34 22 22 TRP TRP A . n A 1 35 ALA 35 23 23 ALA ALA A . n A 1 36 CYS 36 24 24 CYS CYS A . n A 1 37 PHE 37 25 25 PHE PHE A . n A 1 38 SER 38 26 26 SER SER A . n A 1 39 SER 39 27 27 SER SER A . n A 1 40 GLN 40 28 28 GLN GLN A . n A 1 41 GLN 41 29 29 GLN GLN A . n A 1 42 ALA 42 30 30 ALA ALA A . n A 1 43 ALA 43 31 31 ALA ALA A . n A 1 44 GLU 44 32 32 GLU GLU A . n A 1 45 LYS 45 33 33 LYS LYS A . n A 1 46 ALA 46 34 34 ALA ALA A . n A 1 47 VAL 47 35 35 VAL VAL A . n A 1 48 LYS 48 36 36 LYS LYS A . n A 1 49 ALA 49 37 37 ALA ALA A . n A 1 50 VAL 50 38 38 VAL VAL A . n A 1 51 PHE 51 39 39 PHE PHE A . n A 1 52 GLN 52 40 40 GLN GLN A . n A 1 53 ARG 53 41 41 ARG ARG A . n A 1 54 MSE 54 42 42 MSE MSE A . n A 1 55 GLY 55 43 43 GLY GLY A . n A 1 56 ALA 56 44 44 ALA ALA A . n A 1 57 GLN 57 45 45 GLN GLN A . n A 1 58 ALA 58 46 46 ALA ALA A . n A 1 59 TRP 59 47 47 TRP TRP A . n A 1 60 GLY 60 48 48 GLY GLY A . n A 1 61 TYR 61 49 49 TYR TYR A . n A 1 62 SER 62 50 50 SER SER A . n A 1 63 VAL 63 51 51 VAL VAL A . n A 1 64 PRO 64 52 52 PRO PRO A . n A 1 65 ASP 65 53 53 ASP ASP A . n A 1 66 PHE 66 54 54 PHE PHE A . n A 1 67 LEU 67 55 55 LEU LEU A . n A 1 68 GLY 68 56 56 GLY GLY A . n A 1 69 GLU 69 57 57 GLU GLU A . n A 1 70 LEU 70 58 58 LEU LEU A . n A 1 71 SER 71 59 59 SER SER A . n A 1 72 SER 72 60 60 SER SER A . n A 1 73 ARG 73 61 61 ARG ARG A . n A 1 74 PHE 74 62 62 PHE PHE A . n A 1 75 GLU 75 63 63 GLU GLU A . n A 1 76 ILE 76 64 64 ILE ILE A . n A 1 77 PRO 77 65 65 PRO PRO A . n A 1 78 GLU 78 66 66 GLU GLU A . n A 1 79 GLU 79 67 67 GLU GLU A . n A 1 80 LEU 80 68 68 LEU LEU A . n A 1 81 MET 81 69 69 MET MET A . n A 1 82 ASP 82 70 70 ASP ASP A . n A 1 83 HIS 83 71 71 HIS HIS A . n A 1 84 ALA 84 72 72 ALA ALA A . n A 1 85 LEU 85 73 73 LEU LEU A . n A 1 86 GLU 86 74 74 GLU GLU A . n A 1 87 LEU 87 75 75 LEU LEU A . n A 1 88 ASP 88 76 76 ASP ASP A . n A 1 89 LYS 89 77 77 LYS LYS A . n A 1 90 ALA 90 78 78 ALA ALA A . n A 1 91 CYS 91 79 79 CYS CYS A . n A 1 92 ILE 92 80 ? ? ? A . n A 1 93 PRO 93 81 ? ? ? A . n A 1 94 THR 94 82 ? ? ? A . n A 1 95 ARG 95 83 ? ? ? A . n A 1 96 TYR 96 84 ? ? ? A . n A 1 97 PRO 97 85 ? ? ? A . n A 1 98 ASP 98 86 86 ASP ASP A . n A 1 99 ALA 99 87 87 ALA ALA A . n A 1 100 LEU 100 88 88 LEU LEU A . n A 1 101 PRO 101 89 89 PRO PRO A . n A 1 102 SER 102 90 90 SER SER A . n A 1 103 GLY 103 91 91 GLY GLY A . n A 1 104 SER 104 92 92 SER SER A . n A 1 105 PRO 105 93 93 PRO PRO A . n A 1 106 ARG 106 94 94 ARG ARG A . n A 1 107 ASN 107 95 95 ASN ASN A . n A 1 108 ARG 108 96 96 ARG ARG A . n A 1 109 TYR 109 97 97 TYR TYR A . n A 1 110 SER 110 98 98 SER SER A . n A 1 111 ARG 111 99 99 ARG ARG A . n A 1 112 ILE 112 100 100 ILE ILE A . n A 1 113 GLU 113 101 101 GLU GLU A . n A 1 114 ALA 114 102 102 ALA ALA A . n A 1 115 GLU 115 103 103 GLU GLU A . n A 1 116 ARG 116 104 104 ARG ARG A . n A 1 117 LEU 117 105 105 LEU LEU A . n A 1 118 VAL 118 106 106 VAL VAL A . n A 1 119 ASN 119 107 107 ASN ASN A . n A 1 120 TYR 120 108 108 TYR TYR A . n A 1 121 ALA 121 109 109 ALA ALA A . n A 1 122 GLU 122 110 110 GLU GLU A . n A 1 123 LYS 123 111 111 LYS LYS A . n A 1 124 ILE 124 112 112 ILE ILE A . n A 1 125 ILE 125 113 113 ILE ILE A . n A 1 126 ARG 126 114 114 ARG ARG A . n A 1 127 PHE 127 115 115 PHE PHE A . n A 1 128 CYS 128 116 116 CYS CYS A . n A 1 129 GLU 129 117 117 GLU GLU A . n A 1 130 ASP 130 118 118 ASP ASP A . n A 1 131 LEU 131 119 119 LEU LEU A . n A 1 132 LEU 132 120 120 LEU LEU A . n A 1 133 SER 133 121 121 SER SER A . n A 1 134 ARG 134 122 122 ARG ARG A . n A 1 135 ILE 135 123 123 ILE ILE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 124 1 HOH HOH A . B 2 HOH 2 125 2 HOH HOH A . B 2 HOH 3 126 3 HOH HOH A . B 2 HOH 4 127 4 HOH HOH A . B 2 HOH 5 128 5 HOH HOH A . B 2 HOH 6 129 6 HOH HOH A . B 2 HOH 7 130 7 HOH HOH A . B 2 HOH 8 131 8 HOH HOH A . B 2 HOH 9 132 9 HOH HOH A . B 2 HOH 10 133 10 HOH HOH A . B 2 HOH 11 134 11 HOH HOH A . B 2 HOH 12 135 12 HOH HOH A . B 2 HOH 13 136 13 HOH HOH A . B 2 HOH 14 137 14 HOH HOH A . B 2 HOH 15 138 15 HOH HOH A . B 2 HOH 16 139 16 HOH HOH A . B 2 HOH 17 140 17 HOH HOH A . B 2 HOH 18 141 18 HOH HOH A . B 2 HOH 19 142 19 HOH HOH A . B 2 HOH 20 143 20 HOH HOH A . B 2 HOH 21 144 21 HOH HOH A . B 2 HOH 22 145 22 HOH HOH A . B 2 HOH 23 146 23 HOH HOH A . B 2 HOH 24 147 24 HOH HOH A . B 2 HOH 25 148 25 HOH HOH A . B 2 HOH 26 149 26 HOH HOH A . B 2 HOH 27 150 27 HOH HOH A . B 2 HOH 28 151 28 HOH HOH A . B 2 HOH 29 152 29 HOH HOH A . B 2 HOH 30 153 30 HOH HOH A . B 2 HOH 31 154 31 HOH HOH A . B 2 HOH 32 155 32 HOH HOH A . B 2 HOH 33 156 33 HOH HOH A . B 2 HOH 34 157 34 HOH HOH A . B 2 HOH 35 158 35 HOH HOH A . B 2 HOH 36 159 36 HOH HOH A . B 2 HOH 37 160 37 HOH HOH A . B 2 HOH 38 161 38 HOH HOH A . B 2 HOH 39 162 39 HOH HOH A . B 2 HOH 40 163 40 HOH HOH A . B 2 HOH 41 164 41 HOH HOH A . B 2 HOH 42 165 42 HOH HOH A . B 2 HOH 43 166 43 HOH HOH A . B 2 HOH 44 167 44 HOH HOH A . B 2 HOH 45 168 45 HOH HOH A . B 2 HOH 46 169 46 HOH HOH A . B 2 HOH 47 170 47 HOH HOH A . B 2 HOH 48 171 48 HOH HOH A . B 2 HOH 49 172 49 HOH HOH A . B 2 HOH 50 173 50 HOH HOH A . B 2 HOH 51 174 51 HOH HOH A . B 2 HOH 52 175 52 HOH HOH A . B 2 HOH 53 176 53 HOH HOH A . B 2 HOH 54 177 54 HOH HOH A . B 2 HOH 55 178 55 HOH HOH A . B 2 HOH 56 179 56 HOH HOH A . B 2 HOH 57 180 57 HOH HOH A . B 2 HOH 58 181 58 HOH HOH A . B 2 HOH 59 182 59 HOH HOH A . B 2 HOH 60 183 60 HOH HOH A . B 2 HOH 61 184 61 HOH HOH A . B 2 HOH 62 185 62 HOH HOH A . B 2 HOH 63 186 63 HOH HOH A . B 2 HOH 64 187 64 HOH HOH A . B 2 HOH 65 188 65 HOH HOH A . B 2 HOH 66 189 66 HOH HOH A . B 2 HOH 67 190 67 HOH HOH A . B 2 HOH 68 191 68 HOH HOH A . B 2 HOH 69 192 69 HOH HOH A . B 2 HOH 70 193 70 HOH HOH A . B 2 HOH 71 194 71 HOH HOH A . B 2 HOH 72 195 72 HOH HOH A . B 2 HOH 73 196 73 HOH HOH A . B 2 HOH 74 197 74 HOH HOH A . B 2 HOH 75 198 75 HOH HOH A . B 2 HOH 76 199 76 HOH HOH A . B 2 HOH 77 200 77 HOH HOH A . B 2 HOH 78 201 78 HOH HOH A . B 2 HOH 79 202 79 HOH HOH A . B 2 HOH 80 203 80 HOH HOH A . B 2 HOH 81 204 81 HOH HOH A . B 2 HOH 82 205 82 HOH HOH A . B 2 HOH 83 206 83 HOH HOH A . B 2 HOH 84 207 84 HOH HOH A . B 2 HOH 85 208 85 HOH HOH A . B 2 HOH 86 209 86 HOH HOH A . B 2 HOH 87 210 87 HOH HOH A . B 2 HOH 88 211 88 HOH HOH A . B 2 HOH 89 212 89 HOH HOH A . B 2 HOH 90 213 90 HOH HOH A . B 2 HOH 91 214 91 HOH HOH A . B 2 HOH 92 215 92 HOH HOH A . B 2 HOH 93 216 93 HOH HOH A . B 2 HOH 94 217 94 HOH HOH A . B 2 HOH 95 218 95 HOH HOH A . B 2 HOH 96 219 96 HOH HOH A . B 2 HOH 97 220 97 HOH HOH A . B 2 HOH 98 221 98 HOH HOH A . B 2 HOH 99 222 99 HOH HOH A . B 2 HOH 100 223 100 HOH HOH A . B 2 HOH 101 224 101 HOH HOH A . B 2 HOH 102 225 102 HOH HOH A . B 2 HOH 103 226 103 HOH HOH A . B 2 HOH 104 227 104 HOH HOH A . B 2 HOH 105 228 105 HOH HOH A . B 2 HOH 106 229 106 HOH HOH A . B 2 HOH 107 230 107 HOH HOH A . B 2 HOH 108 231 108 HOH HOH A . B 2 HOH 109 232 109 HOH HOH A . B 2 HOH 110 233 110 HOH HOH A . B 2 HOH 111 234 111 HOH HOH A . B 2 HOH 112 235 112 HOH HOH A . B 2 HOH 113 236 113 HOH HOH A . B 2 HOH 114 237 114 HOH HOH A . B 2 HOH 115 238 115 HOH HOH A . B 2 HOH 116 239 116 HOH HOH A . B 2 HOH 117 240 117 HOH HOH A . B 2 HOH 118 241 118 HOH HOH A . B 2 HOH 119 242 119 HOH HOH A . B 2 HOH 120 243 120 HOH HOH A . B 2 HOH 121 244 121 HOH HOH A . B 2 HOH 122 245 122 HOH HOH A . B 2 HOH 123 246 124 HOH HOH A . B 2 HOH 124 247 125 HOH HOH A . B 2 HOH 125 248 126 HOH HOH A . B 2 HOH 126 249 127 HOH HOH A . B 2 HOH 127 250 128 HOH HOH A . B 2 HOH 128 251 129 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 54 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 42 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.8675000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-22 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2018-07-18 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_database_related 3 6 'Structure model' database_2 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 4 'Structure model' '_software.version' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' 6 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 6 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 6.7720 _pdbx_refine_tls.origin_y 9.1380 _pdbx_refine_tls.origin_z 19.0470 _pdbx_refine_tls.T[1][1] 0.0183 _pdbx_refine_tls.T[2][2] 0.0104 _pdbx_refine_tls.T[3][3] -0.0288 _pdbx_refine_tls.T[1][2] -0.0181 _pdbx_refine_tls.T[1][3] -0.0062 _pdbx_refine_tls.T[2][3] 0.0060 _pdbx_refine_tls.L[1][1] 1.1148 _pdbx_refine_tls.L[2][2] 1.6545 _pdbx_refine_tls.L[3][3] 0.5058 _pdbx_refine_tls.L[1][2] -0.7699 _pdbx_refine_tls.L[1][3] -0.0669 _pdbx_refine_tls.L[2][3] 0.6988 _pdbx_refine_tls.S[1][1] 0.0370 _pdbx_refine_tls.S[1][2] 0.1649 _pdbx_refine_tls.S[1][3] 0.0367 _pdbx_refine_tls.S[2][1] -0.2173 _pdbx_refine_tls.S[2][2] 0.0346 _pdbx_refine_tls.S[2][3] -0.0922 _pdbx_refine_tls.S[3][1] -0.1733 _pdbx_refine_tls.S[3][2] -0.0567 _pdbx_refine_tls.S[3][3] -0.0716 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 10 _pdbx_refine_tls_group.beg_auth_seq_id -2 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 135 _pdbx_refine_tls_group.end_auth_seq_id 123 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 RESOLVE 'model building' . ? 3 SOLVE phasing . ? 4 REFMAC refinement . ? 5 CCP4 'data scaling' '(SCALA)' ? 6 RESOLVE phasing . ? 7 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ;BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). The biological unit was adjudged a dimer based on a considerable hydrophobic interface generated by crystallographic symmetry. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 90 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -48.18 _pdbx_validate_torsion.psi 151.70 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 5 ? CE ? A LYS 17 CE 2 1 Y 1 A LYS 5 ? NZ ? A LYS 17 NZ 3 1 Y 1 A LYS 36 ? NZ ? A LYS 48 NZ 4 1 Y 1 A ARG 122 ? NE ? A ARG 134 NE 5 1 Y 1 A ARG 122 ? CZ ? A ARG 134 CZ 6 1 Y 1 A ARG 122 ? NH1 ? A ARG 134 NH1 7 1 Y 1 A ARG 122 ? NH2 ? A ARG 134 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? A MET 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A ILE 80 ? A ILE 92 11 1 Y 1 A PRO 81 ? A PRO 93 12 1 Y 1 A THR 82 ? A THR 94 13 1 Y 1 A ARG 83 ? A ARG 95 14 1 Y 1 A TYR 84 ? A TYR 96 15 1 Y 1 A PRO 85 ? A PRO 97 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #