data_1O3Z # _entry.id 1O3Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O3Z pdb_00001o3z 10.2210/pdb1o3z/pdb NDB AR0046 ? ? RCSB RCSB001775 ? ? WWPDB D_1000001775 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-05-27 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' pdbx_struct_special_symmetry 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 25 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2003-05-27 _pdbx_database_PDB_obs_spr.pdb_id 1O3Z _pdbx_database_PDB_obs_spr.replace_pdb_id 1NLE _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1O3Z _pdbx_database_status.recvd_initial_deposition_date 2003-05-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Walter, P.' 2 'Dumas, P.' 3 # _citation.id primary _citation.title 'A crystallographic study of the binding of 13 metal ions to two related RNA duplexes.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 31 _citation.page_first 2671 _citation.page_last 2682 _citation.year 2003 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12736317 _citation.pdbx_database_id_DOI 10.1093/nar/gkg350 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ennifar, E.' 1 ? primary 'Walter, P.' 2 ? primary 'Dumas, P.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'HIV-1 DIS(MAL) GENOMIC RNA' 7402.472 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 3 non-polymer syn 'RUTHENIUM ION' 101.070 3 ? ? ? ? 4 water nat water 18.015 237 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CUUGCUGAGGUGCACACAGCAAG _entity_poly.pdbx_seq_one_letter_code_can CUUGCUGAGGUGCACACAGCAAG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'RUTHENIUM ION' RU 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 U n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 G n 1 10 G n 1 11 U n 1 12 G n 1 13 C n 1 14 A n 1 15 C n 1 16 A n 1 17 C n 1 18 A n 1 19 G n 1 20 C n 1 21 A n 1 22 A n 1 23 G n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 RU non-polymer . 'RUTHENIUM ION' ? 'Ru 3' 101.070 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n B 1 1 C 1 1 1 C C B . n B 1 2 U 2 2 2 U U B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 C 5 5 5 C C B . n B 1 6 U 6 6 6 U U B . n B 1 7 G 7 7 7 G G B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 U 11 11 11 U U B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 C 15 15 15 C C B . n B 1 16 A 16 16 16 A A B . n B 1 17 C 17 17 17 C C B . n B 1 18 A 18 18 18 A A B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 301 301 MG MG A . D 2 MG 1 303 303 MG MG A . E 2 MG 1 307 307 MG MG A . F 2 MG 1 308 308 MG MG A . G 3 RU 1 500 500 RU RU A . H 2 MG 1 302 302 MG MG B . I 2 MG 1 304 304 MG MG B . J 2 MG 1 305 305 MG MG B . K 2 MG 1 306 306 MG MG B . L 3 RU 1 501 501 RU RU B . M 3 RU 1 502 502 RU RU B . N 4 HOH 1 501 2 HOH HOH A . N 4 HOH 2 502 9 HOH HOH A . N 4 HOH 3 503 10 HOH HOH A . N 4 HOH 4 504 11 HOH HOH A . N 4 HOH 5 505 12 HOH HOH A . N 4 HOH 6 506 13 HOH HOH A . N 4 HOH 7 507 14 HOH HOH A . N 4 HOH 8 508 15 HOH HOH A . N 4 HOH 9 509 22 HOH HOH A . N 4 HOH 10 510 23 HOH HOH A . N 4 HOH 11 511 24 HOH HOH A . N 4 HOH 12 512 25 HOH HOH A . N 4 HOH 13 513 26 HOH HOH A . N 4 HOH 14 514 29 HOH HOH A . N 4 HOH 15 515 30 HOH HOH A . N 4 HOH 16 516 33 HOH HOH A . N 4 HOH 17 517 34 HOH HOH A . N 4 HOH 18 518 39 HOH HOH A . N 4 HOH 19 519 40 HOH HOH A . N 4 HOH 20 520 41 HOH HOH A . N 4 HOH 21 521 42 HOH HOH A . N 4 HOH 22 522 44 HOH HOH A . N 4 HOH 23 523 47 HOH HOH A . N 4 HOH 24 524 50 HOH HOH A . N 4 HOH 25 525 52 HOH HOH A . N 4 HOH 26 526 54 HOH HOH A . N 4 HOH 27 527 55 HOH HOH A . N 4 HOH 28 528 56 HOH HOH A . N 4 HOH 29 529 57 HOH HOH A . N 4 HOH 30 530 61 HOH HOH A . N 4 HOH 31 531 63 HOH HOH A . N 4 HOH 32 532 64 HOH HOH A . N 4 HOH 33 533 65 HOH HOH A . N 4 HOH 34 534 67 HOH HOH A . N 4 HOH 35 535 70 HOH HOH A . N 4 HOH 36 536 71 HOH HOH A . N 4 HOH 37 537 73 HOH HOH A . N 4 HOH 38 538 75 HOH HOH A . N 4 HOH 39 539 76 HOH HOH A . N 4 HOH 40 540 77 HOH HOH A . N 4 HOH 41 541 79 HOH HOH A . N 4 HOH 42 542 82 HOH HOH A . N 4 HOH 43 543 84 HOH HOH A . N 4 HOH 44 544 85 HOH HOH A . N 4 HOH 45 545 86 HOH HOH A . N 4 HOH 46 546 88 HOH HOH A . N 4 HOH 47 547 89 HOH HOH A . N 4 HOH 48 548 90 HOH HOH A . N 4 HOH 49 549 91 HOH HOH A . N 4 HOH 50 550 92 HOH HOH A . N 4 HOH 51 551 93 HOH HOH A . N 4 HOH 52 552 94 HOH HOH A . N 4 HOH 53 553 96 HOH HOH A . N 4 HOH 54 554 99 HOH HOH A . N 4 HOH 55 555 100 HOH HOH A . N 4 HOH 56 556 102 HOH HOH A . N 4 HOH 57 557 103 HOH HOH A . N 4 HOH 58 558 104 HOH HOH A . N 4 HOH 59 559 108 HOH HOH A . N 4 HOH 60 560 110 HOH HOH A . N 4 HOH 61 561 111 HOH HOH A . N 4 HOH 62 562 113 HOH HOH A . N 4 HOH 63 563 114 HOH HOH A . N 4 HOH 64 564 117 HOH HOH A . N 4 HOH 65 565 118 HOH HOH A . N 4 HOH 66 566 119 HOH HOH A . N 4 HOH 67 567 120 HOH HOH A . N 4 HOH 68 568 121 HOH HOH A . N 4 HOH 69 569 122 HOH HOH A . N 4 HOH 70 570 123 HOH HOH A . N 4 HOH 71 571 124 HOH HOH A . N 4 HOH 72 572 125 HOH HOH A . N 4 HOH 73 573 129 HOH HOH A . N 4 HOH 74 574 134 HOH HOH A . N 4 HOH 75 575 135 HOH HOH A . N 4 HOH 76 576 137 HOH HOH A . N 4 HOH 77 577 139 HOH HOH A . N 4 HOH 78 578 149 HOH HOH A . N 4 HOH 79 579 151 HOH HOH A . N 4 HOH 80 580 152 HOH HOH A . N 4 HOH 81 581 153 HOH HOH A . N 4 HOH 82 582 155 HOH HOH A . N 4 HOH 83 583 156 HOH HOH A . N 4 HOH 84 584 158 HOH HOH A . N 4 HOH 85 585 159 HOH HOH A . N 4 HOH 86 586 160 HOH HOH A . N 4 HOH 87 587 162 HOH HOH A . N 4 HOH 88 588 163 HOH HOH A . N 4 HOH 89 589 164 HOH HOH A . N 4 HOH 90 590 165 HOH HOH A . N 4 HOH 91 591 166 HOH HOH A . N 4 HOH 92 592 173 HOH HOH A . N 4 HOH 93 593 174 HOH HOH A . N 4 HOH 94 594 175 HOH HOH A . N 4 HOH 95 595 178 HOH HOH A . N 4 HOH 96 596 180 HOH HOH A . N 4 HOH 97 597 181 HOH HOH A . N 4 HOH 98 598 183 HOH HOH A . N 4 HOH 99 599 184 HOH HOH A . N 4 HOH 100 600 185 HOH HOH A . N 4 HOH 101 601 189 HOH HOH A . N 4 HOH 102 602 190 HOH HOH A . N 4 HOH 103 603 191 HOH HOH A . N 4 HOH 104 604 192 HOH HOH A . N 4 HOH 105 605 193 HOH HOH A . N 4 HOH 106 606 195 HOH HOH A . N 4 HOH 107 607 198 HOH HOH A . N 4 HOH 108 608 199 HOH HOH A . N 4 HOH 109 609 203 HOH HOH A . N 4 HOH 110 610 205 HOH HOH A . N 4 HOH 111 611 206 HOH HOH A . N 4 HOH 112 612 207 HOH HOH A . N 4 HOH 113 613 210 HOH HOH A . N 4 HOH 114 614 217 HOH HOH A . N 4 HOH 115 615 218 HOH HOH A . N 4 HOH 116 616 220 HOH HOH A . N 4 HOH 117 617 221 HOH HOH A . N 4 HOH 118 618 222 HOH HOH A . N 4 HOH 119 619 224 HOH HOH A . N 4 HOH 120 620 225 HOH HOH A . N 4 HOH 121 621 227 HOH HOH A . N 4 HOH 122 622 228 HOH HOH A . N 4 HOH 123 623 229 HOH HOH A . N 4 HOH 124 624 230 HOH HOH A . N 4 HOH 125 625 232 HOH HOH A . N 4 HOH 126 626 233 HOH HOH A . N 4 HOH 127 627 235 HOH HOH A . N 4 HOH 128 628 236 HOH HOH A . N 4 HOH 129 629 239 HOH HOH A . N 4 HOH 130 630 240 HOH HOH A . O 4 HOH 1 503 1 HOH HOH B . O 4 HOH 2 504 3 HOH HOH B . O 4 HOH 3 505 4 HOH HOH B . O 4 HOH 4 506 5 HOH HOH B . O 4 HOH 5 507 6 HOH HOH B . O 4 HOH 6 508 7 HOH HOH B . O 4 HOH 7 509 8 HOH HOH B . O 4 HOH 8 510 16 HOH HOH B . O 4 HOH 9 511 17 HOH HOH B . O 4 HOH 10 512 18 HOH HOH B . O 4 HOH 11 513 19 HOH HOH B . O 4 HOH 12 514 20 HOH HOH B . O 4 HOH 13 515 21 HOH HOH B . O 4 HOH 14 516 27 HOH HOH B . O 4 HOH 15 517 28 HOH HOH B . O 4 HOH 16 518 31 HOH HOH B . O 4 HOH 17 519 32 HOH HOH B . O 4 HOH 18 520 35 HOH HOH B . O 4 HOH 19 521 36 HOH HOH B . O 4 HOH 20 522 37 HOH HOH B . O 4 HOH 21 523 38 HOH HOH B . O 4 HOH 22 524 43 HOH HOH B . O 4 HOH 23 525 45 HOH HOH B . O 4 HOH 24 526 46 HOH HOH B . O 4 HOH 25 527 48 HOH HOH B . O 4 HOH 26 528 49 HOH HOH B . O 4 HOH 27 529 51 HOH HOH B . O 4 HOH 28 530 53 HOH HOH B . O 4 HOH 29 531 58 HOH HOH B . O 4 HOH 30 532 59 HOH HOH B . O 4 HOH 31 533 60 HOH HOH B . O 4 HOH 32 534 62 HOH HOH B . O 4 HOH 33 535 66 HOH HOH B . O 4 HOH 34 536 68 HOH HOH B . O 4 HOH 35 537 69 HOH HOH B . O 4 HOH 36 538 72 HOH HOH B . O 4 HOH 37 539 74 HOH HOH B . O 4 HOH 38 540 78 HOH HOH B . O 4 HOH 39 541 80 HOH HOH B . O 4 HOH 40 542 81 HOH HOH B . O 4 HOH 41 543 83 HOH HOH B . O 4 HOH 42 544 87 HOH HOH B . O 4 HOH 43 545 95 HOH HOH B . O 4 HOH 44 546 97 HOH HOH B . O 4 HOH 45 547 98 HOH HOH B . O 4 HOH 46 548 101 HOH HOH B . O 4 HOH 47 549 105 HOH HOH B . O 4 HOH 48 550 106 HOH HOH B . O 4 HOH 49 551 107 HOH HOH B . O 4 HOH 50 552 109 HOH HOH B . O 4 HOH 51 553 112 HOH HOH B . O 4 HOH 52 554 115 HOH HOH B . O 4 HOH 53 555 116 HOH HOH B . O 4 HOH 54 556 126 HOH HOH B . O 4 HOH 55 557 127 HOH HOH B . O 4 HOH 56 558 128 HOH HOH B . O 4 HOH 57 559 130 HOH HOH B . O 4 HOH 58 560 131 HOH HOH B . O 4 HOH 59 561 132 HOH HOH B . O 4 HOH 60 562 133 HOH HOH B . O 4 HOH 61 563 136 HOH HOH B . O 4 HOH 62 564 138 HOH HOH B . O 4 HOH 63 565 140 HOH HOH B . O 4 HOH 64 566 141 HOH HOH B . O 4 HOH 65 567 142 HOH HOH B . O 4 HOH 66 568 143 HOH HOH B . O 4 HOH 67 569 144 HOH HOH B . O 4 HOH 68 570 145 HOH HOH B . O 4 HOH 69 571 146 HOH HOH B . O 4 HOH 70 572 147 HOH HOH B . O 4 HOH 71 573 148 HOH HOH B . O 4 HOH 72 574 150 HOH HOH B . O 4 HOH 73 575 154 HOH HOH B . O 4 HOH 74 576 157 HOH HOH B . O 4 HOH 75 577 161 HOH HOH B . O 4 HOH 76 578 167 HOH HOH B . O 4 HOH 77 579 168 HOH HOH B . O 4 HOH 78 580 169 HOH HOH B . O 4 HOH 79 581 170 HOH HOH B . O 4 HOH 80 582 171 HOH HOH B . O 4 HOH 81 583 172 HOH HOH B . O 4 HOH 82 584 176 HOH HOH B . O 4 HOH 83 585 177 HOH HOH B . O 4 HOH 84 586 179 HOH HOH B . O 4 HOH 85 587 182 HOH HOH B . O 4 HOH 86 588 186 HOH HOH B . O 4 HOH 87 589 187 HOH HOH B . O 4 HOH 88 590 188 HOH HOH B . O 4 HOH 89 591 194 HOH HOH B . O 4 HOH 90 592 197 HOH HOH B . O 4 HOH 91 593 201 HOH HOH B . O 4 HOH 92 594 202 HOH HOH B . O 4 HOH 93 595 204 HOH HOH B . O 4 HOH 94 596 208 HOH HOH B . O 4 HOH 95 597 209 HOH HOH B . O 4 HOH 96 598 211 HOH HOH B . O 4 HOH 97 599 212 HOH HOH B . O 4 HOH 98 600 213 HOH HOH B . O 4 HOH 99 601 214 HOH HOH B . O 4 HOH 100 602 215 HOH HOH B . O 4 HOH 101 603 219 HOH HOH B . O 4 HOH 102 604 223 HOH HOH B . O 4 HOH 103 605 226 HOH HOH B . O 4 HOH 104 606 231 HOH HOH B . O 4 HOH 105 607 234 HOH HOH B . O 4 HOH 106 608 237 HOH HOH B . O 4 HOH 107 609 238 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHARP phasing . ? 3 CNS refinement 0.4A ? 4 # _cell.entry_id 1O3Z _cell.length_a 59.100 _cell.length_b 59.100 _cell.length_c 64.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O3Z _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # _exptl.entry_id 1O3Z _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.65 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 120.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MACSCIENCE _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRROR _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ENRAF-NONIUS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1O3Z _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.650 _reflns.number_obs 7042 _reflns.number_all ? _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.039 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.65 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 93.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.098 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1O3Z _refine.ls_number_reflns_obs 6823 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 2.65 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 570 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1O3Z _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.48 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.44 _refine_analyze.Luzzati_sigma_a_free 0.55 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1048 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 1296 _refine_hist.d_res_high 2.65 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.003 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.80 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 7.90 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.27 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1O3Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1O3Z _struct.title 'HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1O3Z _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'HIV-1, RNA, METAL IONS, DIS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 4 ? O N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1O3Z _struct_ref.pdbx_db_accession 1O3Z _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1O3Z A 1 ? 23 ? 1O3Z 1 ? 23 ? 1 23 2 1 1O3Z B 1 ? 23 ? 1O3Z 1 ? 23 ? 1 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 3 O4 ? ? ? 1_555 D MG . MG ? ? A U 3 A MG 303 1_555 ? ? ? ? ? ? ? 2.978 ? ? metalc2 metalc ? ? A G 4 O6 ? ? ? 1_555 D MG . MG ? ? A G 4 A MG 303 1_555 ? ? ? ? ? ? ? 2.755 ? ? metalc3 metalc ? ? A A 8 OP2 ? ? ? 1_555 E MG . MG ? ? A A 8 A MG 307 1_555 ? ? ? ? ? ? ? 2.477 ? ? metalc4 metalc ? ? A G 9 N7 ? ? ? 1_555 E MG . MG ? ? A G 9 A MG 307 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc5 metalc ? ? A G 9 OP1 ? ? ? 1_555 H MG . MG ? ? A G 9 B MG 302 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 301 A HOH 598 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 301 A HOH 610 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 301 A HOH 613 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 303 A HOH 581 1_555 ? ? ? ? ? ? ? 2.742 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 303 B HOH 513 1_555 ? ? ? ? ? ? ? 2.828 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 307 A HOH 501 1_555 ? ? ? ? ? ? ? 2.258 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 307 A HOH 577 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 307 A HOH 600 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc14 metalc ? ? E MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 307 A HOH 614 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc15 metalc ? ? F MG . MG ? ? ? 1_555 N HOH . O ? ? A MG 308 A HOH 575 1_555 ? ? ? ? ? ? ? 3.083 ? ? metalc16 metalc ? ? F MG . MG ? ? ? 1_555 B G 12 O6 ? ? A MG 308 B G 12 1_555 ? ? ? ? ? ? ? 2.972 ? ? metalc17 metalc ? ? F MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 308 B HOH 509 1_555 ? ? ? ? ? ? ? 1.890 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 O HOH . O ? ? A MG 308 B HOH 511 1_555 ? ? ? ? ? ? ? 2.991 ? ? metalc19 metalc ? ? N HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 559 B MG 302 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc20 metalc ? ? N HOH . O ? ? ? 1_555 H MG . MG ? ? A HOH 590 B MG 302 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc21 metalc ? ? B A 8 OP2 A ? ? 1_555 K MG . MG ? ? B A 8 B MG 306 1_555 ? ? ? ? ? ? ? 2.608 ? ? metalc22 metalc ? ? B A 8 OP2 B ? ? 1_555 K MG . MG ? ? B A 8 B MG 306 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc23 metalc ? ? B G 9 OP1 B ? ? 1_555 H MG . MG ? ? B G 9 B MG 302 1_555 ? ? ? ? ? ? ? 2.469 ? ? metalc24 metalc ? ? B G 9 N7 B ? ? 1_555 K MG . MG ? ? B G 9 B MG 306 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc25 metalc ? ? B G 9 N7 A ? ? 1_555 K MG . MG ? ? B G 9 B MG 306 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc26 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 302 B HOH 565 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc27 metalc ? ? H MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 302 B HOH 590 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc28 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 304 B HOH 566 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc29 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 304 B HOH 577 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc30 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 304 B HOH 599 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc31 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 304 B HOH 600 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc32 metalc ? ? I MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 304 B HOH 601 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc33 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 305 B HOH 519 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc34 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 305 B HOH 558 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc35 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 305 B HOH 559 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc36 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 305 B HOH 567 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc37 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 305 B HOH 574 1_555 ? ? ? ? ? ? ? 2.304 ? ? metalc38 metalc ? ? J MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 305 B HOH 586 1_555 ? ? ? ? ? ? ? 2.223 ? ? metalc39 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 306 B HOH 503 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc40 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 306 B HOH 505 1_555 ? ? ? ? ? ? ? 2.020 ? ? metalc41 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 306 B HOH 507 1_555 ? ? ? ? ? ? ? 2.583 ? ? metalc42 metalc ? ? K MG . MG ? ? ? 1_555 O HOH . O ? ? B MG 306 B HOH 560 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc43 metalc ? ? M RU . RU ? ? ? 1_555 O HOH . O ? ? B RU 502 B HOH 603 1_555 ? ? ? ? ? ? ? 2.138 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 23 N1 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 23 O6 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 23 N2 ? ? A C 1 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 22 N1 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 22 N6 ? ? A U 2 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 21 N1 ? ? A U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 21 N6 ? ? A U 3 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 4 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 5 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 18 N1 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 18 N6 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 7 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N1 ? ? ? 1_555 B A 16 N1 ? ? A G 9 B A 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? A G 9 O6 ? ? ? 1_555 B A 16 N6 ? ? A G 9 B A 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 9 B C 17 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 10 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 11 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 12 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 13 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 14 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 14 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 14 B U 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 15 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 16 N1 ? ? ? 1_555 B G 9 N1 A ? A A 16 B G 9 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog39 hydrog ? ? A A 16 N6 ? ? ? 1_555 B G 9 O6 A ? A A 16 B G 9 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog40 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 7 N1 A ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 7 O6 A ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 7 N2 A ? A C 17 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 18 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 18 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 18 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 18 B U 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 19 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 20 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 21 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 21 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 21 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 21 B U 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 22 N1 ? ? ? 1_555 B U 2 N3 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 22 N6 ? ? ? 1_555 B U 2 O4 ? ? A A 22 B U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 23 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 23 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 23 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 23 B C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A U 3 ? A U 3 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O6 ? A G 4 ? A G 4 ? 1_555 76.4 ? 2 O4 ? A U 3 ? A U 3 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O ? N HOH . ? A HOH 581 ? 1_555 101.9 ? 3 O6 ? A G 4 ? A G 4 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O ? N HOH . ? A HOH 581 ? 1_555 98.1 ? 4 O4 ? A U 3 ? A U 3 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O ? O HOH . ? B HOH 513 ? 1_555 148.7 ? 5 O6 ? A G 4 ? A G 4 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O ? O HOH . ? B HOH 513 ? 1_555 84.0 ? 6 O ? N HOH . ? A HOH 581 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O ? O HOH . ? B HOH 513 ? 1_555 104.9 ? 7 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 N7 ? A G 9 ? A G 9 ? 1_555 86.0 ? 8 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 501 ? 1_555 84.2 ? 9 N7 ? A G 9 ? A G 9 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 501 ? 1_555 99.3 ? 10 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 577 ? 1_555 91.6 ? 11 N7 ? A G 9 ? A G 9 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 577 ? 1_555 82.8 ? 12 O ? N HOH . ? A HOH 501 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 577 ? 1_555 175.1 ? 13 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 600 ? 1_555 77.1 ? 14 N7 ? A G 9 ? A G 9 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 600 ? 1_555 161.5 ? 15 O ? N HOH . ? A HOH 501 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 600 ? 1_555 86.5 ? 16 O ? N HOH . ? A HOH 577 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 600 ? 1_555 90.1 ? 17 OP2 ? A A 8 ? A A 8 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 614 ? 1_555 160.6 ? 18 N7 ? A G 9 ? A G 9 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 614 ? 1_555 112.2 ? 19 O ? N HOH . ? A HOH 501 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 614 ? 1_555 98.8 ? 20 O ? N HOH . ? A HOH 577 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 614 ? 1_555 84.5 ? 21 O ? N HOH . ? A HOH 600 ? 1_555 MG ? E MG . ? A MG 307 ? 1_555 O ? N HOH . ? A HOH 614 ? 1_555 84.0 ? 22 OP1 ? A G 9 ? A G 9 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? N HOH . ? A HOH 559 ? 1_555 60.8 ? 23 OP1 ? A G 9 ? A G 9 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? N HOH . ? A HOH 590 ? 1_555 72.3 ? 24 O ? N HOH . ? A HOH 559 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? N HOH . ? A HOH 590 ? 1_555 73.5 ? 25 OP1 ? A G 9 ? A G 9 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 OP1 B B G 9 ? B G 9 ? 1_555 151.4 ? 26 O ? N HOH . ? A HOH 559 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 OP1 B B G 9 ? B G 9 ? 1_555 118.7 ? 27 O ? N HOH . ? A HOH 590 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 OP1 B B G 9 ? B G 9 ? 1_555 80.2 ? 28 OP1 ? A G 9 ? A G 9 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 565 ? 1_555 104.9 ? 29 O ? N HOH . ? A HOH 559 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 565 ? 1_555 84.3 ? 30 O ? N HOH . ? A HOH 590 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 565 ? 1_555 156.0 ? 31 OP1 B B G 9 ? B G 9 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 565 ? 1_555 103.4 ? 32 OP1 ? A G 9 ? A G 9 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 590 ? 1_555 93.5 ? 33 O ? N HOH . ? A HOH 559 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 590 ? 1_555 151.7 ? 34 O ? N HOH . ? A HOH 590 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 590 ? 1_555 111.9 ? 35 OP1 B B G 9 ? B G 9 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 590 ? 1_555 89.5 ? 36 O ? O HOH . ? B HOH 565 ? 1_555 MG ? H MG . ? B MG 302 ? 1_555 O ? O HOH . ? B HOH 590 ? 1_555 92.0 ? 37 O ? N HOH . ? A HOH 598 ? 1_555 MG ? C MG . ? A MG 301 ? 1_555 O ? N HOH . ? A HOH 610 ? 1_555 76.8 ? 38 O ? N HOH . ? A HOH 598 ? 1_555 MG ? C MG . ? A MG 301 ? 1_555 O ? N HOH . ? A HOH 613 ? 1_555 106.2 ? 39 O ? N HOH . ? A HOH 610 ? 1_555 MG ? C MG . ? A MG 301 ? 1_555 O ? N HOH . ? A HOH 613 ? 1_555 150.4 ? 40 O ? N HOH . ? A HOH 575 ? 1_555 MG ? F MG . ? A MG 308 ? 1_555 O6 ? B G 12 ? B G 12 ? 1_555 154.5 ? 41 O ? N HOH . ? A HOH 575 ? 1_555 MG ? F MG . ? A MG 308 ? 1_555 O ? O HOH . ? B HOH 509 ? 1_555 96.8 ? 42 O6 ? B G 12 ? B G 12 ? 1_555 MG ? F MG . ? A MG 308 ? 1_555 O ? O HOH . ? B HOH 509 ? 1_555 99.8 ? 43 O ? N HOH . ? A HOH 575 ? 1_555 MG ? F MG . ? A MG 308 ? 1_555 O ? O HOH . ? B HOH 511 ? 1_555 81.5 ? 44 O6 ? B G 12 ? B G 12 ? 1_555 MG ? F MG . ? A MG 308 ? 1_555 O ? O HOH . ? B HOH 511 ? 1_555 94.0 ? 45 O ? O HOH . ? B HOH 509 ? 1_555 MG ? F MG . ? A MG 308 ? 1_555 O ? O HOH . ? B HOH 511 ? 1_555 51.2 ? 46 OP2 A B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 OP2 B B A 8 ? B A 8 ? 1_555 26.9 ? 47 OP2 A B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 N7 B B G 9 ? B G 9 ? 1_555 65.7 ? 48 OP2 B B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 N7 B B G 9 ? B G 9 ? 1_555 87.4 ? 49 OP2 A B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 N7 A B G 9 ? B G 9 ? 1_555 79.8 ? 50 OP2 B B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 N7 A B G 9 ? B G 9 ? 1_555 105.1 ? 51 N7 B B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 N7 A B G 9 ? B G 9 ? 1_555 23.0 ? 52 OP2 A B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 503 ? 1_555 76.1 ? 53 OP2 B B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 503 ? 1_555 85.5 ? 54 N7 B B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 503 ? 1_555 102.5 ? 55 N7 A B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 503 ? 1_555 89.2 ? 56 OP2 A B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 505 ? 1_555 101.3 ? 57 OP2 B B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 505 ? 1_555 91.5 ? 58 N7 B B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 505 ? 1_555 77.6 ? 59 N7 A B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 505 ? 1_555 91.9 ? 60 O ? O HOH . ? B HOH 503 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 505 ? 1_555 176.9 ? 61 OP2 A B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 507 ? 1_555 109.5 ? 62 OP2 B B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 507 ? 1_555 85.7 ? 63 N7 B B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 507 ? 1_555 169.8 ? 64 N7 A B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 507 ? 1_555 167.0 ? 65 O ? O HOH . ? B HOH 503 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 507 ? 1_555 84.4 ? 66 O ? O HOH . ? B HOH 505 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 507 ? 1_555 95.1 ? 67 OP2 A B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 560 ? 1_555 163.1 ? 68 OP2 B B A 8 ? B A 8 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 560 ? 1_555 165.1 ? 69 N7 B B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 560 ? 1_555 107.5 ? 70 N7 A B G 9 ? B G 9 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 560 ? 1_555 89.3 ? 71 O ? O HOH . ? B HOH 503 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 560 ? 1_555 91.0 ? 72 O ? O HOH . ? B HOH 505 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 560 ? 1_555 91.9 ? 73 O ? O HOH . ? B HOH 507 ? 1_555 MG ? K MG . ? B MG 306 ? 1_555 O ? O HOH . ? B HOH 560 ? 1_555 79.5 ? 74 O ? O HOH . ? B HOH 566 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 577 ? 1_555 84.2 ? 75 O ? O HOH . ? B HOH 566 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 599 ? 1_555 93.2 ? 76 O ? O HOH . ? B HOH 577 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 599 ? 1_555 106.4 ? 77 O ? O HOH . ? B HOH 566 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 600 ? 1_555 80.5 ? 78 O ? O HOH . ? B HOH 577 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 600 ? 1_555 160.9 ? 79 O ? O HOH . ? B HOH 599 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 600 ? 1_555 86.0 ? 80 O ? O HOH . ? B HOH 566 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 601 ? 1_555 82.4 ? 81 O ? O HOH . ? B HOH 577 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 601 ? 1_555 61.6 ? 82 O ? O HOH . ? B HOH 599 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 601 ? 1_555 167.5 ? 83 O ? O HOH . ? B HOH 600 ? 1_555 MG ? I MG . ? B MG 304 ? 1_555 O ? O HOH . ? B HOH 601 ? 1_555 104.7 ? 84 O ? O HOH . ? B HOH 519 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 558 ? 1_555 90.9 ? 85 O ? O HOH . ? B HOH 519 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 559 ? 1_555 100.0 ? 86 O ? O HOH . ? B HOH 558 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 559 ? 1_555 91.5 ? 87 O ? O HOH . ? B HOH 519 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 567 ? 1_555 90.2 ? 88 O ? O HOH . ? B HOH 558 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 567 ? 1_555 175.2 ? 89 O ? O HOH . ? B HOH 559 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 567 ? 1_555 83.7 ? 90 O ? O HOH . ? B HOH 519 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 574 ? 1_555 77.8 ? 91 O ? O HOH . ? B HOH 558 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 574 ? 1_555 83.9 ? 92 O ? O HOH . ? B HOH 559 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 574 ? 1_555 174.9 ? 93 O ? O HOH . ? B HOH 567 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 574 ? 1_555 100.9 ? 94 O ? O HOH . ? B HOH 519 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 586 ? 1_555 159.3 ? 95 O ? O HOH . ? B HOH 558 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 586 ? 1_555 88.3 ? 96 O ? O HOH . ? B HOH 559 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 586 ? 1_555 100.7 ? 97 O ? O HOH . ? B HOH 567 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 586 ? 1_555 92.4 ? 98 O ? O HOH . ? B HOH 574 ? 1_555 MG ? J MG . ? B MG 305 ? 1_555 O ? O HOH . ? B HOH 586 ? 1_555 81.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 301 ? 3 'BINDING SITE FOR RESIDUE MG A 301' AC2 Software B MG 302 ? 6 'BINDING SITE FOR RESIDUE MG B 302' AC3 Software A MG 303 ? 4 'BINDING SITE FOR RESIDUE MG A 303' AC4 Software B MG 304 ? 5 'BINDING SITE FOR RESIDUE MG B 304' AC5 Software B MG 305 ? 7 'BINDING SITE FOR RESIDUE MG B 305' AC6 Software B MG 306 ? 6 'BINDING SITE FOR RESIDUE MG B 306' AC7 Software A MG 307 ? 6 'BINDING SITE FOR RESIDUE MG A 307' AC8 Software A MG 308 ? 5 'BINDING SITE FOR RESIDUE MG A 308' AC9 Software B RU 502 ? 3 'BINDING SITE FOR RESIDUE RU B 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HOH N . ? HOH A 598 . ? 1_555 ? 2 AC1 3 HOH N . ? HOH A 610 . ? 1_555 ? 3 AC1 3 HOH N . ? HOH A 613 . ? 1_555 ? 4 AC2 6 G A 9 ? G A 9 . ? 1_555 ? 5 AC2 6 HOH N . ? HOH A 559 . ? 1_555 ? 6 AC2 6 HOH N . ? HOH A 590 . ? 1_555 ? 7 AC2 6 G B 9 ? G B 9 . ? 1_555 ? 8 AC2 6 HOH O . ? HOH B 565 . ? 1_555 ? 9 AC2 6 HOH O . ? HOH B 590 . ? 1_555 ? 10 AC3 4 U A 3 ? U A 3 . ? 1_555 ? 11 AC3 4 G A 4 ? G A 4 . ? 1_555 ? 12 AC3 4 HOH N . ? HOH A 581 . ? 1_555 ? 13 AC3 4 HOH O . ? HOH B 513 . ? 1_555 ? 14 AC4 5 HOH O . ? HOH B 566 . ? 1_555 ? 15 AC4 5 HOH O . ? HOH B 577 . ? 1_555 ? 16 AC4 5 HOH O . ? HOH B 599 . ? 1_555 ? 17 AC4 5 HOH O . ? HOH B 600 . ? 1_555 ? 18 AC4 5 HOH O . ? HOH B 601 . ? 1_555 ? 19 AC5 7 G B 7 ? G B 7 . ? 1_555 ? 20 AC5 7 HOH O . ? HOH B 519 . ? 1_555 ? 21 AC5 7 HOH O . ? HOH B 558 . ? 1_555 ? 22 AC5 7 HOH O . ? HOH B 559 . ? 1_555 ? 23 AC5 7 HOH O . ? HOH B 567 . ? 1_555 ? 24 AC5 7 HOH O . ? HOH B 574 . ? 1_555 ? 25 AC5 7 HOH O . ? HOH B 586 . ? 1_555 ? 26 AC6 6 A B 8 ? A B 8 . ? 1_555 ? 27 AC6 6 G B 9 ? G B 9 . ? 1_555 ? 28 AC6 6 HOH O . ? HOH B 503 . ? 1_555 ? 29 AC6 6 HOH O . ? HOH B 505 . ? 1_555 ? 30 AC6 6 HOH O . ? HOH B 507 . ? 1_555 ? 31 AC6 6 HOH O . ? HOH B 560 . ? 1_555 ? 32 AC7 6 A A 8 ? A A 8 . ? 1_555 ? 33 AC7 6 G A 9 ? G A 9 . ? 1_555 ? 34 AC7 6 HOH N . ? HOH A 501 . ? 1_555 ? 35 AC7 6 HOH N . ? HOH A 577 . ? 1_555 ? 36 AC7 6 HOH N . ? HOH A 600 . ? 1_555 ? 37 AC7 6 HOH N . ? HOH A 614 . ? 1_555 ? 38 AC8 5 G A 12 ? G A 12 . ? 1_555 ? 39 AC8 5 HOH N . ? HOH A 575 . ? 1_555 ? 40 AC8 5 G B 12 ? G B 12 . ? 1_555 ? 41 AC8 5 HOH O . ? HOH B 509 . ? 1_555 ? 42 AC8 5 HOH O . ? HOH B 511 . ? 1_555 ? 43 AC9 3 HOH O . ? HOH B 570 . ? 1_555 ? 44 AC9 3 HOH O . ? HOH B 603 . ? 1_555 ? 45 AC9 3 HOH O . ? HOH B 608 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 RU B RU 502 ? ? O B HOH 608 ? ? 1.17 2 1 "O2'" B G 9 ? A O B HOH 541 ? ? 2.01 3 1 O B HOH 570 ? ? O B HOH 608 ? ? 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 6 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 6 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 P _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 7 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 103.38 _pdbx_validate_rmsd_angle.angle_target_value 119.70 _pdbx_validate_rmsd_angle.angle_deviation -16.32 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 G _pdbx_validate_polymer_linkage.auth_seq_id_1 9 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 A _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 G _pdbx_validate_polymer_linkage.auth_seq_id_2 10 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.86 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 549 ? N HOH . 2 1 A HOH 551 ? N HOH . 3 1 A HOH 626 ? N HOH . 4 1 B HOH 581 ? O HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 RU RU RU N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1O3Z 'double helix' 1O3Z 'a-form double helix' 1O3Z 'bulge loop' 1O3Z 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 23 1_555 -0.208 -0.194 0.112 24.097 -19.223 -2.749 1 A_C1:G23_B A 1 ? B 23 ? 19 1 1 A U 2 1_555 B A 22 1_555 -0.083 -0.315 -0.394 8.111 -18.444 5.295 2 A_U2:A22_B A 2 ? B 22 ? 20 1 1 A U 3 1_555 B A 21 1_555 0.011 -0.363 -0.186 3.071 -14.479 4.307 3 A_U3:A21_B A 3 ? B 21 ? 20 1 1 A G 4 1_555 B C 20 1_555 -0.144 0.045 0.052 -6.466 -12.840 3.037 4 A_G4:C20_B A 4 ? B 20 ? 19 1 1 A C 5 1_555 B G 19 1_555 0.548 -0.154 0.441 -10.818 -14.651 -0.631 5 A_C5:G19_B A 5 ? B 19 ? 19 1 1 A U 6 1_555 B A 18 1_555 -0.052 -0.193 -0.136 -6.022 -11.968 3.257 6 A_U6:A18_B A 6 ? B 18 ? 20 1 1 A G 7 1_555 B C 17 1_555 -0.065 -0.211 -0.021 -2.266 -13.669 -0.161 7 A_G7:C17_B A 7 ? B 17 ? 19 1 1 A G 9 1_555 B A 16 1_555 -0.302 1.575 -0.470 21.658 -16.155 -0.076 8 A_G9:A16_B A 9 ? B 16 ? 8 ? 1 A G 10 1_555 B C 15 1_555 -0.589 -0.114 0.146 -6.698 -16.447 4.820 9 A_G10:C15_B A 10 ? B 15 ? 19 1 1 A U 11 1_555 B A 14 1_555 -0.289 -0.237 0.052 -3.046 -14.113 1.246 10 A_U11:A14_B A 11 ? B 14 ? 20 1 1 A G 12 1_555 B C 13 1_555 -0.715 -0.116 0.138 -1.931 -8.446 0.678 11 A_G12:C13_B A 12 ? B 13 ? 19 1 1 A C 13 1_555 B G 12 1_555 -0.022 -0.160 0.303 -0.055 -4.928 3.176 12 A_C13:G12_B A 13 ? B 12 ? 19 1 1 A A 14 1_555 B U 11 1_555 0.250 -0.215 0.194 8.311 -7.834 2.269 13 A_A14:U11_B A 14 ? B 11 ? 20 1 1 A C 15 1_555 B G 10 1_555 0.016 -0.239 0.174 6.272 -15.729 -0.467 14 A_C15:G10_B A 15 ? B 10 ? 19 1 1 A A 16 1_555 B G 9 1_555 0.464 1.330 -0.579 -21.874 -32.315 -14.184 15 A_A16:G9_B A 16 ? B 9 ? 8 ? 1 A C 17 1_555 B G 7 1_555 -0.443 0.033 0.304 -2.369 -6.035 4.182 16 A_C17:G7_B A 17 ? B 7 ? 19 1 1 A A 18 1_555 B U 6 1_555 -0.144 -0.148 0.158 7.798 -10.840 2.602 17 A_A18:U6_B A 18 ? B 6 ? 20 1 1 A G 19 1_555 B C 5 1_555 -0.234 -0.424 0.068 6.285 -16.487 -2.585 18 A_G19:C5_B A 19 ? B 5 ? 19 1 1 A C 20 1_555 B G 4 1_555 0.423 -0.145 -0.116 7.255 -16.017 5.371 19 A_C20:G4_B A 20 ? B 4 ? 19 1 1 A A 21 1_555 B U 3 1_555 0.061 -0.088 0.055 -1.451 -14.906 8.112 20 A_A21:U3_B A 21 ? B 3 ? 20 1 1 A A 22 1_555 B U 2 1_555 -0.169 -0.212 0.302 10.951 -10.046 3.302 21 A_A22:U2_B A 22 ? B 2 ? 20 1 1 A G 23 1_555 B C 1 1_555 -0.212 -0.092 0.028 1.253 -16.378 4.691 22 A_G23:C1_B A 23 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 23 1_555 A U 2 1_555 B A 22 1_555 -0.366 -1.447 3.532 -0.688 14.125 36.377 -3.891 0.465 2.806 21.647 1.054 38.943 1 AA_C1U2:A22G23_BB A 1 ? B 23 ? A 2 ? B 22 ? 1 A U 2 1_555 B A 22 1_555 A U 3 1_555 B A 21 1_555 -0.154 -1.141 3.355 -3.482 10.762 32.851 -3.526 -0.264 2.853 18.363 5.942 34.693 2 AA_U2U3:A21A22_BB A 2 ? B 22 ? A 3 ? B 21 ? 1 A U 3 1_555 B A 21 1_555 A G 4 1_555 B C 20 1_555 0.273 -1.678 3.442 0.187 11.304 31.520 -4.725 -0.445 2.699 20.020 -0.331 33.438 3 AA_U3G4:C20A21_BB A 3 ? B 21 ? A 4 ? B 20 ? 1 A G 4 1_555 B C 20 1_555 A C 5 1_555 B G 19 1_555 -0.509 -1.307 3.357 -3.480 7.618 35.826 -3.105 0.335 3.059 12.180 5.563 36.761 4 AA_G4C5:G19C20_BB A 4 ? B 20 ? A 5 ? B 19 ? 1 A C 5 1_555 B G 19 1_555 A U 6 1_555 B A 18 1_555 0.504 -1.324 2.965 7.613 11.133 29.837 -4.006 0.235 2.387 20.362 -13.925 32.681 5 AA_C5U6:A18G19_BB A 5 ? B 19 ? A 6 ? B 18 ? 1 A U 6 1_555 B A 18 1_555 A G 7 1_555 B C 17 1_555 0.513 -1.254 3.069 0.122 17.808 29.802 -4.416 -0.846 2.024 31.352 -0.215 34.614 6 AA_U6G7:C17A18_BB A 6 ? B 18 ? A 7 ? B 17 ? 1 A G 7 1_555 B C 17 1_555 A G 9 1_555 B A 16 1_555 -1.477 0.141 2.726 2.969 4.712 37.518 -0.278 2.584 2.604 7.277 -4.585 37.914 7 AA_G7G9:A16C17_BB A 7 ? B 17 ? A 9 ? B 16 ? 1 A G 9 1_555 B A 16 1_555 A G 10 1_555 B C 15 1_555 0.005 -2.255 3.731 -8.722 11.126 32.591 -5.394 -1.334 2.749 18.763 14.709 35.448 8 AA_G9G10:C15A16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.580 -1.273 3.011 -0.049 5.798 36.043 -2.747 0.919 2.781 9.296 0.079 36.491 9 AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 0.401 -1.654 3.130 -1.231 9.350 28.636 -4.859 -0.992 2.460 18.288 2.408 30.118 10 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 -0.183 -1.355 3.275 -1.719 2.135 33.660 -2.675 0.039 3.190 3.679 2.963 33.769 11 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.024 -1.408 2.876 0.971 6.501 31.251 -3.548 0.104 2.538 11.902 -1.778 31.918 12 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 0.315 -1.678 3.256 1.639 3.687 32.476 -3.596 -0.286 3.064 6.560 -2.916 32.719 13 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? 1 A C 15 1_555 B G 10 1_555 A A 16 1_555 B G 9 1_555 -0.749 -2.014 3.659 8.370 17.112 38.209 -4.471 1.861 2.380 24.382 -11.926 42.535 14 AA_C15A16:G9G10_BB A 15 ? B 10 ? A 16 ? B 9 ? 1 A A 16 1_555 B G 9 1_555 A C 17 1_555 B G 7 1_555 1.624 -0.070 3.069 -12.388 -5.068 31.590 0.562 -4.420 2.275 -8.830 21.583 34.242 15 AA_A16C17:G7G9_BB A 16 ? B 9 ? A 17 ? B 7 ? 1 A C 17 1_555 B G 7 1_555 A A 18 1_555 B U 6 1_555 -0.389 -0.985 2.886 -1.475 16.377 33.347 -3.351 0.449 2.196 26.621 2.398 37.077 16 AA_C17A18:U6G7_BB A 17 ? B 7 ? A 18 ? B 6 ? 1 A A 18 1_555 B U 6 1_555 A G 19 1_555 B C 5 1_555 -0.042 -1.392 3.348 -0.506 9.675 30.703 -4.176 -0.010 2.792 17.727 0.927 32.161 17 AA_A18G19:C5U6_BB A 18 ? B 6 ? A 19 ? B 5 ? 1 A G 19 1_555 B C 5 1_555 A C 20 1_555 B G 4 1_555 0.929 -1.533 3.178 3.122 2.921 36.646 -2.805 -1.061 3.116 4.627 -4.944 36.886 18 AA_G19C20:G4C5_BB A 19 ? B 5 ? A 20 ? B 4 ? 1 A C 20 1_555 B G 4 1_555 A A 21 1_555 B U 3 1_555 -0.444 -1.532 3.418 0.505 13.465 28.490 -5.206 0.907 2.454 25.626 -0.961 31.456 19 AA_C20A21:U3G4_BB A 20 ? B 4 ? A 21 ? B 3 ? 1 A A 21 1_555 B U 3 1_555 A A 22 1_555 B U 2 1_555 -0.375 -0.895 2.886 -1.601 9.000 30.351 -3.048 0.436 2.539 16.720 2.975 31.667 20 AA_A21A22:U2U3_BB A 21 ? B 3 ? A 22 ? B 2 ? 1 A A 22 1_555 B U 2 1_555 A G 23 1_555 B C 1 1_555 0.625 -1.403 3.421 4.900 15.017 32.035 -4.415 -0.329 2.594 25.375 -8.279 35.626 21 AA_A22G23:C1U2_BB A 22 ? B 2 ? A 23 ? B 1 ? # _atom_sites.entry_id 1O3Z _atom_sites.fract_transf_matrix[1][1] 0.016920 _atom_sites.fract_transf_matrix[1][2] 0.009769 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019538 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015601 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P RU # loop_