HEADER LYASE 11-JUL-03 1O4V TITLE CRYSTAL STRUCTURE OF THE CATALYTIC SUBUNIT OF A TITLE 2 PHOSPHORIBOSYLAMINOIMIDAZOLE MUTASE (TM0446) FROM THERMOTOGA MARITIMA TITLE 3 AT 1.77 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINOIMIDAZOLE MUTASE PURE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AIR CARBOXYLASE, AIRC; COMPND 5 EC: 4.1.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: PURE OR TM0446; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 11 20-SEP-23 1O4V 1 REMARK REVDAT 10 25-JAN-23 1O4V 1 REMARK SEQADV REVDAT 9 18-JUL-18 1O4V 1 REMARK REVDAT 8 04-OCT-17 1O4V 1 REMARK REVDAT 7 13-JUL-11 1O4V 1 VERSN REVDAT 6 23-MAR-11 1O4V 1 TITLE KEYWDS REVDAT 5 24-FEB-09 1O4V 1 VERSN REVDAT 4 20-SEP-05 1O4V 1 JRNL REVDAT 3 18-JAN-05 1O4V 1 AUTHOR KEYWDS REMARK REVDAT 2 04-MAY-04 1O4V 1 JRNL TITLE COMPND KEYWDS REVDAT 1 22-JUL-03 1O4V 0 JRNL AUTH R.SCHWARZENBACHER,L.JAROSZEWSKI,F.VON DELFT,P.ABDUBEK, JRNL AUTH 2 E.AMBING,T.BIORAC,L.S.BRINEN,J.M.CANAVES,J.CAMBELL,H.J.CHIU, JRNL AUTH 3 X.DAI,A.M.DEACON,M.DIDONATO,M.A.ELSLIGER,S.ESHAGI,R.FLOYD, JRNL AUTH 4 A.GODZIK,C.GRITTINI,S.K.GRZECHNIK,E.HAMPTON,C.KARLAK, JRNL AUTH 5 H.E.KLOCK,E.KOESEMA,J.S.KOVARIK,A.KREUSCH,P.KUHN,S.A.LESLEY, JRNL AUTH 6 I.LEVIN,D.MCMULLAN,T.M.MCPHILLIPS,M.D.MILLER,A.MORSE,K.MOY, JRNL AUTH 7 J.OUYANG,R.PAGE,K.QUIJANO,A.ROBB,G.SPRAGGON,R.C.STEVENS, JRNL AUTH 8 H.VAN DEN BEDEM,J.VELASQUEZ,J.VINCENT,X.WANG,B.WEST,G.WOLF, JRNL AUTH 9 Q.XU,K.O.HODGSON,J.WOOLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A PHOSPHORIBOSYLAMINOIMIDAZOLE MUTASE JRNL TITL 2 PURE (TM0446) FROM THERMOTOGA MARITIMA AT 1.77 A RESOLUTION JRNL REF PROTEINS V. 55 474 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15048837 JRNL DOI 10.1002/PROT.20023 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 15859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 838 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 885 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.05000 REMARK 3 B22 (A**2) : -2.05000 REMARK 3 B33 (A**2) : 4.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.354 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1330 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1280 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1795 ; 1.468 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2974 ; 0.927 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 168 ; 5.245 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;37.012 ;23.774 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 244 ;14.792 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.694 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 205 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1448 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 250 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 254 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1246 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 805 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.210 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.314 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 95 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 839 ; 0.873 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1354 ; 1.589 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 491 ; 2.684 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 441 ; 4.544 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7710 1.3790 9.7300 REMARK 3 T TENSOR REMARK 3 T11: -0.0434 T22: -0.0070 REMARK 3 T33: -0.1488 T12: 0.0012 REMARK 3 T13: -0.0297 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.3470 L22: 2.1185 REMARK 3 L33: 0.3698 L12: 0.0849 REMARK 3 L13: -0.1008 L23: -0.2685 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.1358 S13: -0.0290 REMARK 3 S21: 0.2385 S22: -0.0159 S23: -0.1804 REMARK 3 S31: -0.0321 S32: 0.0959 S33: 0.0123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. WEAK, AMBIGUOUS DENSITY FOR BOTH THE REMARK 3 N- AND C-TERMINAL RESIDUES WAS NOT MODELED. 2. UNEXPLAINED REMARK 3 SURFACE DENSITY BETWEEN ASP11 AND ARG40, AND AT THE INTER- REMARK 3 OCTAMER CONTACT AROUND GLU145, WAS MODELED AS WATERS. 3. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 1O4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000001806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953690 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16697 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 24.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1QCZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1M TRI-SODIUM REMARK 280 CITRATE DIHYDRATE PH 5.6, 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE , VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 51.62450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 51.62450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.72250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 51.62450 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 51.62450 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 32.72250 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 51.62450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 51.62450 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 32.72250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 51.62450 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 51.62450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 32.72250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 51.62450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.62450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 32.72250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 51.62450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.62450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 32.72250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 51.62450 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 51.62450 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 32.72250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 51.62450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 51.62450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 32.72250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 36850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -444.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 VAL A 1 REMARK 465 GLU A 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CE NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 164 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 317 O HOH A 318 1.82 REMARK 500 OE1 GLN A 19 O HOH A 250 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 319 O HOH A 319 15545 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 103 32.14 -86.47 REMARK 500 ASN A 117 71.70 -100.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282319 RELATED DB: TARGETDB DBREF 1O4V A 2 171 UNP Q9WYS7 PUR6_THEMA 2 171 SEQADV 1O4V MET A -11 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V GLY A -10 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V SER A -9 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V ASP A -8 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V LYS A -7 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V ILE A -6 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V HIS A -5 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V HIS A -4 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V HIS A -3 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V HIS A -2 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V HIS A -1 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V HIS A 0 UNP Q9WYS7 EXPRESSION TAG SEQADV 1O4V VAL A 1 UNP Q9WYS7 EXPRESSION TAG SEQRES 1 A 183 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 A 183 PRO ARG VAL GLY ILE ILE MET GLY SER ASP SER ASP LEU SEQRES 3 A 183 PRO VAL MET LYS GLN ALA ALA GLU ILE LEU GLU GLU PHE SEQRES 4 A 183 GLY ILE ASP TYR GLU ILE THR ILE VAL SER ALA HIS ARG SEQRES 5 A 183 THR PRO ASP ARG MET PHE GLU TYR ALA LYS ASN ALA GLU SEQRES 6 A 183 GLU ARG GLY ILE GLU VAL ILE ILE ALA GLY ALA GLY GLY SEQRES 7 A 183 ALA ALA HIS LEU PRO GLY MET VAL ALA SER ILE THR HIS SEQRES 8 A 183 LEU PRO VAL ILE GLY VAL PRO VAL LYS THR SER THR LEU SEQRES 9 A 183 ASN GLY LEU ASP SER LEU PHE SER ILE VAL GLN MET PRO SEQRES 10 A 183 GLY GLY VAL PRO VAL ALA THR VAL ALA ILE ASN ASN ALA SEQRES 11 A 183 LYS ASN ALA GLY ILE LEU ALA ALA SER ILE LEU GLY ILE SEQRES 12 A 183 LYS TYR PRO GLU ILE ALA ARG LYS VAL LYS GLU TYR LYS SEQRES 13 A 183 GLU ARG MET LYS ARG GLU VAL LEU GLU LYS ALA GLN ARG SEQRES 14 A 183 LEU GLU GLN ILE GLY TYR LYS GLU TYR LEU ASN GLN LYS SEQRES 15 A 183 GLU HET SO4 A 200 5 HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *118(H2 O) HELIX 1 1 SER A 10 SER A 12 5 3 HELIX 2 2 ASP A 13 PHE A 27 1 15 HELIX 3 3 THR A 41 ALA A 52 1 12 HELIX 4 4 HIS A 69 THR A 78 1 10 HELIX 5 5 GLY A 94 GLN A 103 1 10 HELIX 6 6 ASN A 117 ILE A 131 1 15 HELIX 7 7 TYR A 133 GLN A 160 1 28 HELIX 8 8 TYR A 163 LYS A 170 1 8 SHEET 1 A 5 ASP A 30 ILE A 35 0 SHEET 2 A 5 ARG A 3 MET A 8 1 N ILE A 6 O THR A 34 SHEET 3 A 5 VAL A 59 GLY A 65 1 O ILE A 61 N GLY A 5 SHEET 4 A 5 VAL A 82 VAL A 87 1 O ILE A 83 N ALA A 62 SHEET 5 A 5 ALA A 111 THR A 112 1 O ALA A 111 N GLY A 84 SITE 1 AC1 8 SER A 37 ALA A 38 HIS A 39 ARG A 40 SITE 2 AC1 8 PRO A 105 HOH A 210 HOH A 216 HOH A 299 SITE 1 AC2 2 ASN A 93 HOH A 308 CRYST1 103.249 103.249 65.445 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009685 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015280 0.00000