data_1O50 # _entry.id 1O50 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O50 pdb_00001o50 10.2210/pdb1o50/pdb RCSB RCSB001811 ? ? WWPDB D_1000001811 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 282804 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1O50 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2003-07-31 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of a tandem cystathionine-beta-synthase (CBS) domain protein (TM0935) from Thermotoga maritima at 1.87 A resolution ; _citation.journal_abbrev Proteins _citation.journal_volume 57 _citation.page_first 213 _citation.page_last 217 _citation.year 2004 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15326606 _citation.pdbx_database_id_DOI 10.1002/prot.20024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Miller, M.D.' 1 ? primary 'Schwarzenbacher, R.' 2 ? primary 'von Delft, F.' 3 ? primary 'Abdubek, P.' 4 ? primary 'Ambing, E.' 5 ? primary 'Biorac, T.' 6 ? primary 'Brinen, L.S.' 7 ? primary 'Canaves, J.M.' 8 ? primary 'Cambell, J.' 9 ? primary 'Chiu, H.J.' 10 ? primary 'Dai, X.' 11 ? primary 'Deacon, A.M.' 12 ? primary 'DiDonato, M.' 13 ? primary 'Elsliger, M.A.' 14 ? primary 'Eshagi, S.' 15 ? primary 'Floyd, R.' 16 ? primary 'Godzik, A.' 17 ? primary 'Grittini, C.' 18 ? primary 'Grzechnik, S.K.' 19 ? primary 'Hampton, E.' 20 ? primary 'Jaroszewski, L.' 21 ? primary 'Karlak, C.' 22 ? primary 'Klock, H.E.' 23 ? primary 'Koesema, E.' 24 ? primary 'Kovarik, J.S.' 25 ? primary 'Kreusch, A.' 26 ? primary 'Kuhn, P.' 27 ? primary 'Lesley, S.A.' 28 ? primary 'Levin, I.' 29 ? primary 'McMullan, D.' 30 ? primary 'McPhillips, T.M.' 31 ? primary 'Morse, A.' 32 ? primary 'Moy, K.' 33 ? primary 'Ouyang, J.' 34 ? primary 'Page, R.' 35 ? primary 'Quijano, K.' 36 ? primary 'Robb, A.' 37 ? primary 'Spraggon, G.' 38 ? primary 'Stevens, R.C.' 39 ? primary 'van den Bedem, H.' 40 ? primary 'Velasquez, J.' 41 ? primary 'Vincent, J.' 42 ? primary 'Wang, X.' 43 ? primary 'West, B.' 44 ? primary 'Wolf, G.' 45 ? primary 'Xu, Q.' 46 ? primary 'Hodgson, K.O.' 47 ? primary 'Wooley, J.' 48 ? primary 'Wilson, I.A.' 49 ? # _cell.length_a 45.169 _cell.length_b 45.169 _cell.length_c 177.196 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 1O50 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 1O50 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 92 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CBS domain-containing predicted protein TM0935' 18040.217 1 ? ? ? ? 2 water nat water 18.015 214 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSDKIHHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFI PKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGREK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFI PKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGREK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 282804 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MET n 1 14 LYS n 1 15 VAL n 1 16 LYS n 1 17 ASP n 1 18 VAL n 1 19 CYS n 1 20 LYS n 1 21 LEU n 1 22 ILE n 1 23 SER n 1 24 LEU n 1 25 LYS n 1 26 PRO n 1 27 THR n 1 28 VAL n 1 29 VAL n 1 30 GLU n 1 31 GLU n 1 32 ASP n 1 33 THR n 1 34 PRO n 1 35 ILE n 1 36 GLU n 1 37 GLU n 1 38 ILE n 1 39 VAL n 1 40 ASP n 1 41 ARG n 1 42 ILE n 1 43 LEU n 1 44 GLU n 1 45 ASP n 1 46 PRO n 1 47 VAL n 1 48 THR n 1 49 ARG n 1 50 THR n 1 51 VAL n 1 52 TYR n 1 53 VAL n 1 54 ALA n 1 55 ARG n 1 56 ASP n 1 57 ASN n 1 58 LYS n 1 59 LEU n 1 60 VAL n 1 61 GLY n 1 62 MET n 1 63 ILE n 1 64 PRO n 1 65 VAL n 1 66 MET n 1 67 HIS n 1 68 LEU n 1 69 LEU n 1 70 LYS n 1 71 VAL n 1 72 SER n 1 73 GLY n 1 74 PHE n 1 75 HIS n 1 76 PHE n 1 77 PHE n 1 78 GLY n 1 79 PHE n 1 80 ILE n 1 81 PRO n 1 82 LYS n 1 83 GLU n 1 84 GLU n 1 85 LEU n 1 86 ILE n 1 87 ARG n 1 88 SER n 1 89 SER n 1 90 MET n 1 91 LYS n 1 92 ARG n 1 93 LEU n 1 94 ILE n 1 95 ALA n 1 96 LYS n 1 97 ASN n 1 98 ALA n 1 99 SER n 1 100 GLU n 1 101 ILE n 1 102 MET n 1 103 LEU n 1 104 ASP n 1 105 PRO n 1 106 VAL n 1 107 TYR n 1 108 VAL n 1 109 HIS n 1 110 MET n 1 111 ASP n 1 112 THR n 1 113 PRO n 1 114 LEU n 1 115 GLU n 1 116 GLU n 1 117 ALA n 1 118 LEU n 1 119 LYS n 1 120 LEU n 1 121 MET n 1 122 ILE n 1 123 ASP n 1 124 ASN n 1 125 ASN n 1 126 ILE n 1 127 GLN n 1 128 GLU n 1 129 MET n 1 130 PRO n 1 131 VAL n 1 132 VAL n 1 133 ASP n 1 134 GLU n 1 135 LYS n 1 136 GLY n 1 137 GLU n 1 138 ILE n 1 139 VAL n 1 140 GLY n 1 141 ASP n 1 142 LEU n 1 143 ASN n 1 144 SER n 1 145 LEU n 1 146 GLU n 1 147 ILE n 1 148 LEU n 1 149 LEU n 1 150 ALA n 1 151 LEU n 1 152 TRP n 1 153 LYS n 1 154 GLY n 1 155 ARG n 1 156 GLU n 1 157 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM0935 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9X033_THEMA _struct_ref.pdbx_db_accession Q9X033 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKR LIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGREK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O50 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X033 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 145 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 145 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1O50 MET A 1 ? UNP Q9X033 ? ? 'expression tag' -11 1 1 1O50 GLY A 2 ? UNP Q9X033 ? ? 'expression tag' -10 2 1 1O50 SER A 3 ? UNP Q9X033 ? ? 'expression tag' -9 3 1 1O50 ASP A 4 ? UNP Q9X033 ? ? 'expression tag' -8 4 1 1O50 LYS A 5 ? UNP Q9X033 ? ? 'expression tag' -7 5 1 1O50 ILE A 6 ? UNP Q9X033 ? ? 'expression tag' -6 6 1 1O50 HIS A 7 ? UNP Q9X033 ? ? 'expression tag' -5 7 1 1O50 HIS A 8 ? UNP Q9X033 ? ? 'expression tag' -4 8 1 1O50 HIS A 9 ? UNP Q9X033 ? ? 'expression tag' -3 9 1 1O50 HIS A 10 ? UNP Q9X033 ? ? 'expression tag' -2 10 1 1O50 HIS A 11 ? UNP Q9X033 ? ? 'expression tag' -1 11 1 1O50 HIS A 12 ? UNP Q9X033 ? ? 'expression tag' 0 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1O50 # loop_ _exptl_crystal.id _exptl_crystal.density_percent_sol _exptl_crystal.density_Matthews _exptl_crystal.density_meas _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 48.27 2.40 ? ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.pH _exptl_crystal_grow.temp _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION,SITTING DROP,NANODROP' 6.0 277 'crystal 1: 20% PEG-6000, 0.1M MES pH 6.0, 1M LiCl, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' ? . 2 'VAPOR DIFFUSION,SITTING DROP,NANODROP' 6.6 277 'crystal 2: 0.2M ammonium formate, 20% PEG-3350, pH 6.6, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K' ? . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2001-06-03 'flat mirror' 2 CCD 'ADSC QUANTUM 315' 2002-12-12 'flat mirror' # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 M 'single crystal Si(311) bent monochromator' 1 'SINGLE WAVELENGTH' x-ray 2 M 'single crystal Si(311) bent monochromator' 1 MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97001 1.0 2 0.97932 1.0 3 0.90497 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON SSRL BL9-1 'SSRL BEAMLINE BL9-1' 0.97001 ? 2 SYNCHROTRON SSRL BL11-1 'SSRL BEAMLINE BL11-1' ? '0.97932, 0.90497' # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.830 _reflns.d_resolution_low 31.63 _reflns.number_all 16963 _reflns.number_obs 16963 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 10.5 _reflns.B_iso_Wilson_estimate 32.45 _reflns.pdbx_redundancy 3.2 _reflns.pdbx_Rsym_value 0.072 _reflns.entry_id 1O50 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.83 _reflns_shell.d_res_low 1.88 _reflns_shell.percent_possible_all 90.6 _reflns_shell.pdbx_Rsym_value 0.62 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.number_unique_all 1130 _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.ls_d_res_high 1.87 _refine.ls_d_res_low 31.43 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 15161 _refine.ls_number_reflns_R_free 813 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_percent_reflns_obs 99.41 _refine.ls_R_factor_obs 0.19435 _refine.ls_R_factor_R_work 0.19113 _refine.ls_R_factor_R_free 0.25495 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.B_iso_mean 32.331 _refine.aniso_B[1][1] -0.17 _refine.aniso_B[2][2] -0.17 _refine.aniso_B[3][3] 0.34 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details ;1. ADDITIONAL N-TERMINAL HIS-TAG RESIDUES INDICATED BY CONTINUOUS BUT UNINTERPRETABLE DENSITY, AND WAS MODELED BY WATERS. 2. PROMINENT DENSITY AT MISSING RESIDUE A70 WAS MODELED AS WATER CHAIN. 3. PROMINENT CONTINUOUS DENSITY AROUND RESIDUE A29 WAS MODELED AS WATER CHAIN. 4. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ; _refine.pdbx_overall_ESU_R 0.135 _refine.pdbx_overall_ESU_R_Free 0.145 _refine.overall_SU_ML 0.132 _refine.overall_SU_B 8.887 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1O50 _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1124 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 214 _refine_hist.number_atoms_total 1338 _refine_hist.d_res_high 1.87 _refine_hist.d_res_low 31.43 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1153 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1108 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1558 1.549 1.984 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2592 0.882 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 139 5.331 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 48 32.217 25.625 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 228 13.825 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 8.069 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 186 0.100 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1219 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 192 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 235 0.208 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1271 0.233 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 658 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 134 0.222 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 7 0.106 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 54 0.253 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 16 0.115 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 708 0.799 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1163 1.372 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 445 2.123 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 395 3.409 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.870 _refine_ls_shell.d_res_low 1.919 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 1069 _refine_ls_shell.R_factor_R_work 0.339 _refine_ls_shell.percent_reflns_R_free 5.73 _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.R_factor_R_free 0.372 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1O50 _struct.title 'Crystal structure of a cbs domain-containing protein (tm0935) from thermotoga maritima at 1.87 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Cbs-domain pair fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI, transferase ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 1O50 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 14 ? CYS A 19 ? LYS A 2 CYS A 7 1 ? 6 HELX_P HELX_P2 2 PRO A 34 ? ASP A 45 ? PRO A 22 ASP A 33 1 ? 12 HELX_P HELX_P3 3 VAL A 65 ? GLY A 78 ? VAL A 53 GLY A 66 1 ? 14 HELX_P HELX_P4 4 ASN A 97 ? MET A 102 ? ASN A 85 MET A 90 1 ? 6 HELX_P HELX_P5 5 PRO A 113 ? ASN A 125 ? PRO A 101 ASN A 113 1 ? 13 HELX_P HELX_P6 6 SER A 144 ? GLY A 154 ? SER A 132 GLY A 142 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 27 ? VAL A 29 ? THR A 15 VAL A 17 A 2 THR A 50 ? ARG A 55 ? THR A 38 ARG A 43 A 3 LYS A 58 ? PRO A 64 ? LYS A 46 PRO A 52 B 1 GLU A 128 ? VAL A 132 ? GLU A 116 VAL A 120 B 2 ILE A 138 ? ASN A 143 ? ILE A 126 ASN A 131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 29 ? N VAL A 17 O TYR A 52 ? O TYR A 40 A 2 3 N VAL A 51 ? N VAL A 39 O ILE A 63 ? O ILE A 51 B 1 2 N VAL A 131 ? N VAL A 119 O VAL A 139 ? O VAL A 127 # _atom_sites.entry_id 1O50 _atom_sites.fract_transf_matrix[1][1] 0.022139 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022139 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005643 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MET 13 1 1 MET MET A . n A 1 14 LYS 14 2 2 LYS LYS A . n A 1 15 VAL 15 3 3 VAL VAL A . n A 1 16 LYS 16 4 4 LYS LYS A . n A 1 17 ASP 17 5 5 ASP ASP A . n A 1 18 VAL 18 6 6 VAL VAL A . n A 1 19 CYS 19 7 7 CYS CYS A . n A 1 20 LYS 20 8 8 LYS LYS A . n A 1 21 LEU 21 9 9 LEU LEU A . n A 1 22 ILE 22 10 10 ILE ILE A . n A 1 23 SER 23 11 11 SER SER A . n A 1 24 LEU 24 12 12 LEU LEU A . n A 1 25 LYS 25 13 13 LYS LYS A . n A 1 26 PRO 26 14 14 PRO PRO A . n A 1 27 THR 27 15 15 THR THR A . n A 1 28 VAL 28 16 16 VAL VAL A . n A 1 29 VAL 29 17 17 VAL VAL A . n A 1 30 GLU 30 18 18 GLU GLU A . n A 1 31 GLU 31 19 19 GLU GLU A . n A 1 32 ASP 32 20 20 ASP ASP A . n A 1 33 THR 33 21 21 THR THR A . n A 1 34 PRO 34 22 22 PRO PRO A . n A 1 35 ILE 35 23 23 ILE ILE A . n A 1 36 GLU 36 24 24 GLU GLU A . n A 1 37 GLU 37 25 25 GLU GLU A . n A 1 38 ILE 38 26 26 ILE ILE A . n A 1 39 VAL 39 27 27 VAL VAL A . n A 1 40 ASP 40 28 28 ASP ASP A . n A 1 41 ARG 41 29 29 ARG ARG A . n A 1 42 ILE 42 30 30 ILE ILE A . n A 1 43 LEU 43 31 31 LEU LEU A . n A 1 44 GLU 44 32 32 GLU GLU A . n A 1 45 ASP 45 33 33 ASP ASP A . n A 1 46 PRO 46 34 34 PRO PRO A . n A 1 47 VAL 47 35 35 VAL VAL A . n A 1 48 THR 48 36 36 THR THR A . n A 1 49 ARG 49 37 37 ARG ARG A . n A 1 50 THR 50 38 38 THR THR A . n A 1 51 VAL 51 39 39 VAL VAL A . n A 1 52 TYR 52 40 40 TYR TYR A . n A 1 53 VAL 53 41 41 VAL VAL A . n A 1 54 ALA 54 42 42 ALA ALA A . n A 1 55 ARG 55 43 43 ARG ARG A . n A 1 56 ASP 56 44 44 ASP ASP A . n A 1 57 ASN 57 45 45 ASN ASN A . n A 1 58 LYS 58 46 46 LYS LYS A . n A 1 59 LEU 59 47 47 LEU LEU A . n A 1 60 VAL 60 48 48 VAL VAL A . n A 1 61 GLY 61 49 49 GLY GLY A . n A 1 62 MET 62 50 50 MET MET A . n A 1 63 ILE 63 51 51 ILE ILE A . n A 1 64 PRO 64 52 52 PRO PRO A . n A 1 65 VAL 65 53 53 VAL VAL A . n A 1 66 MET 66 54 54 MET MET A . n A 1 67 HIS 67 55 55 HIS HIS A . n A 1 68 LEU 68 56 56 LEU LEU A . n A 1 69 LEU 69 57 57 LEU LEU A . n A 1 70 LYS 70 58 58 LYS LYS A . n A 1 71 VAL 71 59 59 VAL VAL A . n A 1 72 SER 72 60 60 SER SER A . n A 1 73 GLY 73 61 61 GLY GLY A . n A 1 74 PHE 74 62 62 PHE PHE A . n A 1 75 HIS 75 63 63 HIS HIS A . n A 1 76 PHE 76 64 64 PHE PHE A . n A 1 77 PHE 77 65 65 PHE PHE A . n A 1 78 GLY 78 66 66 GLY GLY A . n A 1 79 PHE 79 67 67 PHE PHE A . n A 1 80 ILE 80 68 68 ILE ILE A . n A 1 81 PRO 81 69 69 PRO PRO A . n A 1 82 LYS 82 70 ? ? ? A . n A 1 83 GLU 83 71 ? ? ? A . n A 1 84 GLU 84 72 ? ? ? A . n A 1 85 LEU 85 73 ? ? ? A . n A 1 86 ILE 86 74 ? ? ? A . n A 1 87 ARG 87 75 ? ? ? A . n A 1 88 SER 88 76 ? ? ? A . n A 1 89 SER 89 77 77 SER SER A . n A 1 90 MET 90 78 78 MET MET A . n A 1 91 LYS 91 79 79 LYS LYS A . n A 1 92 ARG 92 80 80 ARG ARG A . n A 1 93 LEU 93 81 81 LEU LEU A . n A 1 94 ILE 94 82 82 ILE ILE A . n A 1 95 ALA 95 83 83 ALA ALA A . n A 1 96 LYS 96 84 84 LYS LYS A . n A 1 97 ASN 97 85 85 ASN ASN A . n A 1 98 ALA 98 86 86 ALA ALA A . n A 1 99 SER 99 87 87 SER SER A . n A 1 100 GLU 100 88 88 GLU GLU A . n A 1 101 ILE 101 89 89 ILE ILE A . n A 1 102 MET 102 90 90 MET MET A . n A 1 103 LEU 103 91 91 LEU LEU A . n A 1 104 ASP 104 92 92 ASP ASP A . n A 1 105 PRO 105 93 93 PRO PRO A . n A 1 106 VAL 106 94 94 VAL VAL A . n A 1 107 TYR 107 95 95 TYR TYR A . n A 1 108 VAL 108 96 96 VAL VAL A . n A 1 109 HIS 109 97 97 HIS HIS A . n A 1 110 MET 110 98 98 MET MET A . n A 1 111 ASP 111 99 99 ASP ASP A . n A 1 112 THR 112 100 100 THR THR A . n A 1 113 PRO 113 101 101 PRO PRO A . n A 1 114 LEU 114 102 102 LEU LEU A . n A 1 115 GLU 115 103 103 GLU GLU A . n A 1 116 GLU 116 104 104 GLU GLU A . n A 1 117 ALA 117 105 105 ALA ALA A . n A 1 118 LEU 118 106 106 LEU LEU A . n A 1 119 LYS 119 107 107 LYS LYS A . n A 1 120 LEU 120 108 108 LEU LEU A . n A 1 121 MET 121 109 109 MET MET A . n A 1 122 ILE 122 110 110 ILE ILE A . n A 1 123 ASP 123 111 111 ASP ASP A . n A 1 124 ASN 124 112 112 ASN ASN A . n A 1 125 ASN 125 113 113 ASN ASN A . n A 1 126 ILE 126 114 114 ILE ILE A . n A 1 127 GLN 127 115 115 GLN GLN A . n A 1 128 GLU 128 116 116 GLU GLU A . n A 1 129 MET 129 117 117 MET MET A . n A 1 130 PRO 130 118 118 PRO PRO A . n A 1 131 VAL 131 119 119 VAL VAL A . n A 1 132 VAL 132 120 120 VAL VAL A . n A 1 133 ASP 133 121 121 ASP ASP A . n A 1 134 GLU 134 122 122 GLU GLU A . n A 1 135 LYS 135 123 123 LYS LYS A . n A 1 136 GLY 136 124 124 GLY GLY A . n A 1 137 GLU 137 125 125 GLU GLU A . n A 1 138 ILE 138 126 126 ILE ILE A . n A 1 139 VAL 139 127 127 VAL VAL A . n A 1 140 GLY 140 128 128 GLY GLY A . n A 1 141 ASP 141 129 129 ASP ASP A . n A 1 142 LEU 142 130 130 LEU LEU A . n A 1 143 ASN 143 131 131 ASN ASN A . n A 1 144 SER 144 132 132 SER SER A . n A 1 145 LEU 145 133 133 LEU LEU A . n A 1 146 GLU 146 134 134 GLU GLU A . n A 1 147 ILE 147 135 135 ILE ILE A . n A 1 148 LEU 148 136 136 LEU LEU A . n A 1 149 LEU 149 137 137 LEU LEU A . n A 1 150 ALA 150 138 138 ALA ALA A . n A 1 151 LEU 151 139 139 LEU LEU A . n A 1 152 TRP 152 140 140 TRP TRP A . n A 1 153 LYS 153 141 141 LYS LYS A . n A 1 154 GLY 154 142 142 GLY GLY A . n A 1 155 ARG 155 143 143 ARG ARG A . n A 1 156 GLU 156 144 144 GLU GLU A . n A 1 157 LYS 157 145 145 LYS LYS A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 146 1 HOH HOH A . B 2 HOH 2 147 2 HOH HOH A . B 2 HOH 3 148 3 HOH HOH A . B 2 HOH 4 149 4 HOH HOH A . B 2 HOH 5 150 5 HOH HOH A . B 2 HOH 6 151 6 HOH HOH A . B 2 HOH 7 152 7 HOH HOH A . B 2 HOH 8 153 8 HOH HOH A . B 2 HOH 9 154 9 HOH HOH A . B 2 HOH 10 155 10 HOH HOH A . B 2 HOH 11 156 11 HOH HOH A . B 2 HOH 12 157 12 HOH HOH A . B 2 HOH 13 158 13 HOH HOH A . B 2 HOH 14 159 14 HOH HOH A . B 2 HOH 15 160 15 HOH HOH A . B 2 HOH 16 161 16 HOH HOH A . B 2 HOH 17 162 17 HOH HOH A . B 2 HOH 18 163 18 HOH HOH A . B 2 HOH 19 164 19 HOH HOH A . B 2 HOH 20 165 21 HOH HOH A . B 2 HOH 21 166 22 HOH HOH A . B 2 HOH 22 167 24 HOH HOH A . B 2 HOH 23 168 25 HOH HOH A . B 2 HOH 24 169 26 HOH HOH A . B 2 HOH 25 170 27 HOH HOH A . B 2 HOH 26 171 28 HOH HOH A . B 2 HOH 27 172 29 HOH HOH A . B 2 HOH 28 173 30 HOH HOH A . B 2 HOH 29 174 31 HOH HOH A . B 2 HOH 30 175 32 HOH HOH A . B 2 HOH 31 176 33 HOH HOH A . B 2 HOH 32 177 34 HOH HOH A . B 2 HOH 33 178 35 HOH HOH A . B 2 HOH 34 179 36 HOH HOH A . B 2 HOH 35 180 38 HOH HOH A . B 2 HOH 36 181 39 HOH HOH A . B 2 HOH 37 182 40 HOH HOH A . B 2 HOH 38 183 41 HOH HOH A . B 2 HOH 39 184 42 HOH HOH A . B 2 HOH 40 185 43 HOH HOH A . B 2 HOH 41 186 44 HOH HOH A . B 2 HOH 42 187 45 HOH HOH A . B 2 HOH 43 188 46 HOH HOH A . B 2 HOH 44 189 47 HOH HOH A . B 2 HOH 45 190 48 HOH HOH A . B 2 HOH 46 191 49 HOH HOH A . B 2 HOH 47 192 50 HOH HOH A . B 2 HOH 48 193 51 HOH HOH A . B 2 HOH 49 194 52 HOH HOH A . B 2 HOH 50 195 53 HOH HOH A . B 2 HOH 51 196 54 HOH HOH A . B 2 HOH 52 197 55 HOH HOH A . B 2 HOH 53 198 56 HOH HOH A . B 2 HOH 54 199 57 HOH HOH A . B 2 HOH 55 200 58 HOH HOH A . B 2 HOH 56 201 59 HOH HOH A . B 2 HOH 57 202 60 HOH HOH A . B 2 HOH 58 203 61 HOH HOH A . B 2 HOH 59 204 62 HOH HOH A . B 2 HOH 60 205 63 HOH HOH A . B 2 HOH 61 206 64 HOH HOH A . B 2 HOH 62 207 65 HOH HOH A . B 2 HOH 63 208 66 HOH HOH A . B 2 HOH 64 209 67 HOH HOH A . B 2 HOH 65 210 68 HOH HOH A . B 2 HOH 66 211 69 HOH HOH A . B 2 HOH 67 212 70 HOH HOH A . B 2 HOH 68 213 71 HOH HOH A . B 2 HOH 69 214 72 HOH HOH A . B 2 HOH 70 215 73 HOH HOH A . B 2 HOH 71 216 74 HOH HOH A . B 2 HOH 72 217 75 HOH HOH A . B 2 HOH 73 218 76 HOH HOH A . B 2 HOH 74 219 77 HOH HOH A . B 2 HOH 75 220 78 HOH HOH A . B 2 HOH 76 221 79 HOH HOH A . B 2 HOH 77 222 80 HOH HOH A . B 2 HOH 78 223 81 HOH HOH A . B 2 HOH 79 224 82 HOH HOH A . B 2 HOH 80 225 83 HOH HOH A . B 2 HOH 81 226 84 HOH HOH A . B 2 HOH 82 227 85 HOH HOH A . B 2 HOH 83 228 86 HOH HOH A . B 2 HOH 84 229 87 HOH HOH A . B 2 HOH 85 230 88 HOH HOH A . B 2 HOH 86 231 89 HOH HOH A . B 2 HOH 87 232 90 HOH HOH A . B 2 HOH 88 233 91 HOH HOH A . B 2 HOH 89 234 92 HOH HOH A . B 2 HOH 90 235 93 HOH HOH A . B 2 HOH 91 236 95 HOH HOH A . B 2 HOH 92 237 96 HOH HOH A . B 2 HOH 93 238 97 HOH HOH A . B 2 HOH 94 239 98 HOH HOH A . B 2 HOH 95 240 99 HOH HOH A . B 2 HOH 96 241 100 HOH HOH A . B 2 HOH 97 242 101 HOH HOH A . B 2 HOH 98 243 102 HOH HOH A . B 2 HOH 99 244 103 HOH HOH A . B 2 HOH 100 245 105 HOH HOH A . B 2 HOH 101 246 106 HOH HOH A . B 2 HOH 102 247 107 HOH HOH A . B 2 HOH 103 248 108 HOH HOH A . B 2 HOH 104 249 109 HOH HOH A . B 2 HOH 105 250 110 HOH HOH A . B 2 HOH 106 251 111 HOH HOH A . B 2 HOH 107 252 112 HOH HOH A . B 2 HOH 108 253 113 HOH HOH A . B 2 HOH 109 254 114 HOH HOH A . B 2 HOH 110 255 116 HOH HOH A . B 2 HOH 111 256 117 HOH HOH A . B 2 HOH 112 257 119 HOH HOH A . B 2 HOH 113 258 120 HOH HOH A . B 2 HOH 114 259 121 HOH HOH A . B 2 HOH 115 260 122 HOH HOH A . B 2 HOH 116 261 123 HOH HOH A . B 2 HOH 117 262 124 HOH HOH A . B 2 HOH 118 263 125 HOH HOH A . B 2 HOH 119 264 126 HOH HOH A . B 2 HOH 120 265 127 HOH HOH A . B 2 HOH 121 266 128 HOH HOH A . B 2 HOH 122 267 129 HOH HOH A . B 2 HOH 123 268 130 HOH HOH A . B 2 HOH 124 269 131 HOH HOH A . B 2 HOH 125 270 132 HOH HOH A . B 2 HOH 126 271 133 HOH HOH A . B 2 HOH 127 272 134 HOH HOH A . B 2 HOH 128 273 135 HOH HOH A . B 2 HOH 129 274 136 HOH HOH A . B 2 HOH 130 275 137 HOH HOH A . B 2 HOH 131 276 138 HOH HOH A . B 2 HOH 132 277 139 HOH HOH A . B 2 HOH 133 278 140 HOH HOH A . B 2 HOH 134 279 141 HOH HOH A . B 2 HOH 135 280 142 HOH HOH A . B 2 HOH 136 281 144 HOH HOH A . B 2 HOH 137 282 145 HOH HOH A . B 2 HOH 138 283 146 HOH HOH A . B 2 HOH 139 284 147 HOH HOH A . B 2 HOH 140 285 148 HOH HOH A . B 2 HOH 141 286 149 HOH HOH A . B 2 HOH 142 287 150 HOH HOH A . B 2 HOH 143 288 151 HOH HOH A . B 2 HOH 144 289 152 HOH HOH A . B 2 HOH 145 290 153 HOH HOH A . B 2 HOH 146 291 154 HOH HOH A . B 2 HOH 147 292 155 HOH HOH A . B 2 HOH 148 293 156 HOH HOH A . B 2 HOH 149 294 157 HOH HOH A . B 2 HOH 150 295 159 HOH HOH A . B 2 HOH 151 296 160 HOH HOH A . B 2 HOH 152 297 161 HOH HOH A . B 2 HOH 153 298 162 HOH HOH A . B 2 HOH 154 299 163 HOH HOH A . B 2 HOH 155 300 164 HOH HOH A . B 2 HOH 156 301 165 HOH HOH A . B 2 HOH 157 302 166 HOH HOH A . B 2 HOH 158 303 167 HOH HOH A . B 2 HOH 159 304 168 HOH HOH A . B 2 HOH 160 305 169 HOH HOH A . B 2 HOH 161 306 170 HOH HOH A . B 2 HOH 162 307 171 HOH HOH A . B 2 HOH 163 308 172 HOH HOH A . B 2 HOH 164 309 173 HOH HOH A . B 2 HOH 165 310 174 HOH HOH A . B 2 HOH 166 311 175 HOH HOH A . B 2 HOH 167 312 176 HOH HOH A . B 2 HOH 168 313 177 HOH HOH A . B 2 HOH 169 314 178 HOH HOH A . B 2 HOH 170 315 179 HOH HOH A . B 2 HOH 171 316 180 HOH HOH A . B 2 HOH 172 317 181 HOH HOH A . B 2 HOH 173 318 182 HOH HOH A . B 2 HOH 174 319 183 HOH HOH A . B 2 HOH 175 320 184 HOH HOH A . B 2 HOH 176 321 185 HOH HOH A . B 2 HOH 177 322 186 HOH HOH A . B 2 HOH 178 323 187 HOH HOH A . B 2 HOH 179 324 188 HOH HOH A . B 2 HOH 180 325 189 HOH HOH A . B 2 HOH 181 326 190 HOH HOH A . B 2 HOH 182 327 191 HOH HOH A . B 2 HOH 183 328 192 HOH HOH A . B 2 HOH 184 329 193 HOH HOH A . B 2 HOH 185 330 194 HOH HOH A . B 2 HOH 186 331 195 HOH HOH A . B 2 HOH 187 332 196 HOH HOH A . B 2 HOH 188 333 197 HOH HOH A . B 2 HOH 189 334 198 HOH HOH A . B 2 HOH 190 335 199 HOH HOH A . B 2 HOH 191 336 200 HOH HOH A . B 2 HOH 192 337 201 HOH HOH A . B 2 HOH 193 338 202 HOH HOH A . B 2 HOH 194 339 203 HOH HOH A . B 2 HOH 195 340 204 HOH HOH A . B 2 HOH 196 341 205 HOH HOH A . B 2 HOH 197 342 206 HOH HOH A . B 2 HOH 198 343 207 HOH HOH A . B 2 HOH 199 344 208 HOH HOH A . B 2 HOH 200 345 209 HOH HOH A . B 2 HOH 201 346 210 HOH HOH A . B 2 HOH 202 347 211 HOH HOH A . B 2 HOH 203 348 212 HOH HOH A . B 2 HOH 204 349 213 HOH HOH A . B 2 HOH 205 350 214 HOH HOH A . B 2 HOH 206 351 215 HOH HOH A . B 2 HOH 207 352 216 HOH HOH A . B 2 HOH 208 353 217 HOH HOH A . B 2 HOH 209 354 218 HOH HOH A . B 2 HOH 210 355 219 HOH HOH A . B 2 HOH 211 356 220 HOH HOH A . B 2 HOH 212 357 221 HOH HOH A . B 2 HOH 213 358 222 HOH HOH A . B 2 HOH 214 359 223 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4430 ? 1 MORE -42 ? 1 'SSA (A^2)' 13400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 177.1960000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-08-12 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2018-07-18 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 6 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_database_related 3 6 'Structure model' database_2 4 6 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 19.3610 _pdbx_refine_tls.origin_y 6.0830 _pdbx_refine_tls.origin_z 90.8210 _pdbx_refine_tls.T[1][1] -0.2129 _pdbx_refine_tls.T[2][2] -0.2602 _pdbx_refine_tls.T[3][3] -0.0525 _pdbx_refine_tls.T[1][2] -0.0294 _pdbx_refine_tls.T[1][3] 0.0304 _pdbx_refine_tls.T[2][3] 0.0058 _pdbx_refine_tls.L[1][1] 0.6858 _pdbx_refine_tls.L[2][2] 0.9229 _pdbx_refine_tls.L[3][3] 5.5461 _pdbx_refine_tls.L[1][2] -0.3753 _pdbx_refine_tls.L[1][3] -0.0639 _pdbx_refine_tls.L[2][3] -0.3208 _pdbx_refine_tls.S[1][1] -0.0570 _pdbx_refine_tls.S[2][2] -0.0597 _pdbx_refine_tls.S[3][3] 0.1167 _pdbx_refine_tls.S[1][2] 0.0749 _pdbx_refine_tls.S[1][3] -0.0466 _pdbx_refine_tls.S[2][3] -0.0489 _pdbx_refine_tls.S[2][1] 0.0069 _pdbx_refine_tls.S[3][1] 0.5621 _pdbx_refine_tls.S[3][2] 0.4261 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 10 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 157 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -2 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 145 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' '4.2)' ? 2 SOLVE phasing . ? 3 RESOLVE 'model building' . ? 4 REFMAC refinement . ? 5 CCP4 'data scaling' '(SCALA)' ? 6 RESOLVE phasing . ? 7 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 330 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 331 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.01 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 99 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 B _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 99 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 B _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 99 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 124.71 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id -1 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 58.87 _pdbx_validate_torsion.psi 11.91 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 43 ? CZ ? A ARG 55 CZ 2 1 Y 1 A ARG 43 ? NH1 ? A ARG 55 NH1 3 1 Y 1 A ARG 43 ? NH2 ? A ARG 55 NH2 4 1 Y 1 A LYS 145 ? NZ ? A LYS 157 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? A MET 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 10 1 Y 1 A LYS 70 ? A LYS 82 11 1 Y 1 A GLU 71 ? A GLU 83 12 1 Y 1 A GLU 72 ? A GLU 84 13 1 Y 1 A LEU 73 ? A LEU 85 14 1 Y 1 A ILE 74 ? A ILE 86 15 1 Y 1 A ARG 75 ? A ARG 87 16 1 Y 1 A SER 76 ? A SER 88 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #