HEADER TRANSCRIPTION 23-SEP-03 1O5L TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR (TM1171) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, CRP FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1171; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM1171, TRANSCRIPTIONAL REGULATOR, CRP FAMILY, STRUCTURAL GENOMICS, KEYWDS 2 JCSG, PSI, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 22-MAY-24 1O5L 1 REMARK REVDAT 7 25-JAN-23 1O5L 1 SEQADV REVDAT 6 18-JUL-18 1O5L 1 REMARK REVDAT 5 13-JUL-11 1O5L 1 VERSN REVDAT 4 24-FEB-09 1O5L 1 VERSN REVDAT 3 01-MAR-05 1O5L 1 JRNL REVDAT 2 18-JAN-05 1O5L 1 AUTHOR KEYWDS REMARK REVDAT 1 07-OCT-03 1O5L 0 JRNL AUTH G.SPRAGGON,D.PANTAZATOS,H.E.KLOCK,I.A.WILSON,V.L.WOODS, JRNL AUTH 2 S.A.LESLEY JRNL TITL ON THE USE OF DXMS TO PRODUCE MORE CRYSTALLIZABLE PROTEINS: JRNL TITL 2 STRUCTURES OF THE T. MARITIMA PROTEINS TM0160 AND TM1171. JRNL REF PROTEIN SCI. V. 13 3187 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15557262 JRNL DOI 10.1110/PS.04939904 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 8737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 443 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 619 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1024 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 53.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.04000 REMARK 3 B22 (A**2) : 2.04000 REMARK 3 B33 (A**2) : -3.05000 REMARK 3 B12 (A**2) : 1.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.935 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1043 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1007 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1408 ; 1.419 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2353 ; 0.782 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ; 6.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 42 ;34.407 ;25.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 203 ;14.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;19.652 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 170 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1113 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 190 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 170 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 897 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 596 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 64 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.306 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 725 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1056 ; 1.137 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 428 ; 1.807 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 352 ; 2.585 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9740 31.2260 2.1880 REMARK 3 T TENSOR REMARK 3 T11: -0.3240 T22: -0.1991 REMARK 3 T33: -0.2657 T12: -0.0112 REMARK 3 T13: -0.0084 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 5.1477 L22: 2.1811 REMARK 3 L33: 4.0282 L12: -1.1575 REMARK 3 L13: 0.0679 L23: 0.7825 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: -0.3204 S13: 0.4106 REMARK 3 S21: -0.0173 S22: 0.0800 S23: 0.0196 REMARK 3 S31: -0.4471 S32: -0.1797 S33: -0.0432 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8180 22.6740 -11.1740 REMARK 3 T TENSOR REMARK 3 T11: -0.2702 T22: -0.2935 REMARK 3 T33: -0.3057 T12: -0.0076 REMARK 3 T13: 0.0111 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 11.4830 L22: 2.5128 REMARK 3 L33: 1.8596 L12: -2.8283 REMARK 3 L13: 1.2546 L23: -0.9428 REMARK 3 S TENSOR REMARK 3 S11: 0.2244 S12: 0.1901 S13: -0.2856 REMARK 3 S21: 0.0121 S22: -0.1247 S23: 0.1675 REMARK 3 S31: 0.0339 S32: -0.0061 S33: -0.0997 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. PROMINENT DENSITY NEAR RESIDUES SER64 AND REMARK 3 ASP111 COULD BE RESIDUAL CAMP, SINCE THIS SEEMS TO BE A CAMP- REMARK 3 BINDING CASSETTE. REMARK 4 REMARK 4 1O5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000001831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.820 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.04 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.91200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG-3000, 0.1M CHES PH 9.5, VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.70100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.40200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.55150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 139.25250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.85050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.70100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 111.40200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 139.25250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.55150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.85050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 31.48550 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 54.53449 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -27.85050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 THR A 130 REMARK 465 LEU A 131 REMARK 465 ARG A 132 REMARK 465 GLU A 133 REMARK 465 LYS A 134 REMARK 465 LEU A 135 REMARK 465 MET A 136 REMARK 465 ASN A 137 REMARK 465 PHE A 138 REMARK 465 LEU A 139 REMARK 465 VAL A 140 REMARK 465 ARG A 141 REMARK 465 HIS A 142 REMARK 465 MET A 143 REMARK 465 ASN A 144 REMARK 465 GLU A 145 REMARK 465 LYS A 146 REMARK 465 ARG A 147 REMARK 465 GLU A 148 REMARK 465 LEU A 149 REMARK 465 THR A 150 REMARK 465 LEU A 151 REMARK 465 PRO A 152 REMARK 465 VAL A 153 REMARK 465 THR A 154 REMARK 465 LEU A 155 REMARK 465 GLU A 156 REMARK 465 GLU A 157 REMARK 465 LEU A 158 REMARK 465 SER A 159 REMARK 465 ARG A 160 REMARK 465 LEU A 161 REMARK 465 PHE A 162 REMARK 465 GLY A 163 REMARK 465 CYS A 164 REMARK 465 ALA A 165 REMARK 465 ARG A 166 REMARK 465 PRO A 167 REMARK 465 ALA A 168 REMARK 465 LEU A 169 REMARK 465 SER A 170 REMARK 465 ARG A 171 REMARK 465 VAL A 172 REMARK 465 PHE A 173 REMARK 465 GLN A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 176 REMARK 465 GLU A 177 REMARK 465 ARG A 178 REMARK 465 GLU A 179 REMARK 465 GLY A 180 REMARK 465 TYR A 181 REMARK 465 ILE A 182 REMARK 465 GLU A 183 REMARK 465 LYS A 184 REMARK 465 HIS A 185 REMARK 465 GLY A 186 REMARK 465 ARG A 187 REMARK 465 ARG A 188 REMARK 465 ILE A 189 REMARK 465 LYS A 190 REMARK 465 VAL A 191 REMARK 465 LEU A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 PRO A 195 REMARK 465 PHE A 196 REMARK 465 GLU A 197 REMARK 465 HIS A 198 REMARK 465 ASP A 199 REMARK 465 ARG A 200 REMARK 465 ILE A 201 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 16 CD NE CZ NH1 NH2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 100 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 30 O HOH A 290 2.05 REMARK 500 O HOH A 229 O HOH A 291 2.11 REMARK 500 O HOH A 297 O HOH A 298 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 111 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 -3.87 75.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283036 RELATED DB: TARGETDB DBREF 1O5L A 1 201 UNP Q9X0Q3 Q9X0Q3_THEMA 1 201 SEQADV 1O5L MET A -11 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L GLY A -10 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L SER A -9 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L ASP A -8 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L LYS A -7 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L ILE A -6 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L HIS A -5 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L HIS A -4 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L HIS A -3 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L HIS A -2 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L HIS A -1 UNP Q9X0Q3 EXPRESSION TAG SEQADV 1O5L HIS A 0 UNP Q9X0Q3 EXPRESSION TAG SEQRES 1 A 213 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 213 ASP LEU LYS LYS LEU LEU PRO CYS GLY LYS VAL ILE VAL SEQRES 3 A 213 PHE ARG LYS GLY GLU ILE VAL LYS HIS GLN ASP ASP PRO SEQRES 4 A 213 ILE GLU ASP VAL LEU ILE LEU LEU GLU GLY THR LEU LYS SEQRES 5 A 213 THR GLU HIS VAL SER GLU ASN GLY LYS THR LEU GLU ILE SEQRES 6 A 213 ASP GLU ILE LYS PRO VAL GLN ILE ILE ALA SER GLY PHE SEQRES 7 A 213 ILE PHE SER SER GLU PRO ARG PHE PRO VAL ASN VAL VAL SEQRES 8 A 213 ALA GLY GLU ASN SER LYS ILE LEU SER ILE PRO LYS GLU SEQRES 9 A 213 VAL PHE LEU ASP LEU LEU MET LYS ASP ARG GLU LEU LEU SEQRES 10 A 213 LEU PHE PHE LEU LYS ASP VAL SER GLU HIS PHE ARG VAL SEQRES 11 A 213 VAL SER GLU LYS LEU PHE PHE LEU THR THR LYS THR LEU SEQRES 12 A 213 ARG GLU LYS LEU MET ASN PHE LEU VAL ARG HIS MET ASN SEQRES 13 A 213 GLU LYS ARG GLU LEU THR LEU PRO VAL THR LEU GLU GLU SEQRES 14 A 213 LEU SER ARG LEU PHE GLY CYS ALA ARG PRO ALA LEU SER SEQRES 15 A 213 ARG VAL PHE GLN GLU LEU GLU ARG GLU GLY TYR ILE GLU SEQRES 16 A 213 LYS HIS GLY ARG ARG ILE LYS VAL LEU LYS ASN PRO PHE SEQRES 17 A 213 GLU HIS ASP ARG ILE FORMUL 2 HOH *111(H2 O) HELIX 1 1 ASP A 2 GLY A 10 5 9 HELIX 2 2 ALA A 63 ILE A 67 5 5 HELIX 3 3 LYS A 91 LYS A 100 1 10 HELIX 4 4 ARG A 102 THR A 128 1 27 SHEET 1 A 4 LYS A 11 PHE A 15 0 SHEET 2 A 4 SER A 84 PRO A 90 -1 O ILE A 86 N ILE A 13 SHEET 3 A 4 ASP A 30 GLU A 36 -1 N ILE A 33 O LEU A 87 SHEET 4 A 4 GLN A 60 ILE A 61 -1 O GLN A 60 N LEU A 34 SHEET 1 B 4 ILE A 20 LYS A 22 0 SHEET 2 B 4 ASN A 77 ALA A 80 -1 O VAL A 78 N LYS A 22 SHEET 3 B 4 LEU A 39 VAL A 44 -1 N LYS A 40 O VAL A 79 SHEET 4 B 4 THR A 50 ILE A 56 -1 O ILE A 53 N THR A 41 CISPEP 1 PRO A 58 VAL A 59 0 -0.24 CRYST1 62.971 62.971 167.103 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015880 0.009169 0.000000 0.00000 SCALE2 0.000000 0.018337 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005984 0.00000