data_1O5N
#
_entry.id 1O5N
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.280
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
PDB 1O5N
RCSB RCSB001833
WWPDB D_1000001833
#
_pdbx_database_PDB_obs_spr.id OBSLTE
_pdbx_database_PDB_obs_spr.pdb_id 1VJ2
_pdbx_database_PDB_obs_spr.replace_pdb_id 1O5N
_pdbx_database_PDB_obs_spr.date 2003-12-09
_pdbx_database_PDB_obs_spr.details ?
#
_pdbx_database_related.db_name TIGER
_pdbx_database_related.db_id TM1459
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.entry_id 1O5N
_pdbx_database_status.status_code OBS
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2003-09-29
_pdbx_database_status.status_code_sf OBS
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.methods_development_category ?
#
_audit_author.name 'Joint Center for Structural Genomics'
_audit_author.pdbx_ordinal 1
#
_citation.id primary
_citation.title
'Crystal structure of hypothetical protein (TM1459) from Thermotoga maritima at 1.65 A resolution'
_citation.journal_abbrev 'To be published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
_citation_author.citation_id primary
_citation_author.name 'Genomics, Joint Center for Structural'
_citation_author.ordinal 1
#
_cell.length_a 52.550
_cell.length_b 52.550
_cell.length_c 96.267
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.entry_id 1O5N
_cell.pdbx_unique_axis ?
_cell.Z_PDB 6
#
_symmetry.space_group_name_H-M 'P 32'
_symmetry.entry_id 1O5N
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.Int_Tables_number 145
_symmetry.cell_setting ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'conserved hypothetical protein TM1459' 13129.073 2 ? ? ? ?
2 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ?
3 water nat water 18.015 173 ? ? ? ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 ILE n
1 3 LEU n
1 4 LYS n
1 5 ARG n
1 6 ALA n
1 7 TYR n
1 8 ASP n
1 9 VAL n
1 10 THR n
1 11 PRO n
1 12 GLN n
1 13 LYS n
1 14 ILE n
1 15 SER n
1 16 THR n
1 17 ASP n
1 18 LYS n
1 19 VAL n
1 20 ARG n
1 21 GLY n
1 22 VAL n
1 23 ARG n
1 24 LYS n
1 25 ARG n
1 26 VAL n
1 27 LEU n
1 28 ILE n
1 29 GLY n
1 30 LEU n
1 31 LYS n
1 32 ASP n
1 33 ALA n
1 34 PRO n
1 35 ASN n
1 36 PHE n
1 37 VAL n
1 38 MET n
1 39 ARG n
1 40 LEU n
1 41 PHE n
1 42 THR n
1 43 VAL n
1 44 GLU n
1 45 PRO n
1 46 GLY n
1 47 GLY n
1 48 LEU n
1 49 ILE n
1 50 ASP n
1 51 ARG n
1 52 HIS n
1 53 SER n
1 54 HIS n
1 55 PRO n
1 56 TRP n
1 57 GLU n
1 58 HIS n
1 59 GLU n
1 60 ILE n
1 61 PHE n
1 62 VAL n
1 63 LEU n
1 64 LYS n
1 65 GLY n
1 66 LYS n
1 67 LEU n
1 68 THR n
1 69 VAL n
1 70 LEU n
1 71 LYS n
1 72 GLU n
1 73 GLN n
1 74 GLY n
1 75 GLU n
1 76 GLU n
1 77 THR n
1 78 VAL n
1 79 GLU n
1 80 GLU n
1 81 GLY n
1 82 PHE n
1 83 TYR n
1 84 ILE n
1 85 PHE n
1 86 VAL n
1 87 GLU n
1 88 PRO n
1 89 ASN n
1 90 GLU n
1 91 ILE n
1 92 HIS n
1 93 GLY n
1 94 PHE n
1 95 ARG n
1 96 ASN n
1 97 ASP n
1 98 THR n
1 99 ASP n
1 100 SER n
1 101 GLU n
1 102 VAL n
1 103 GLU n
1 104 PHE n
1 105 LEU n
1 106 CYS n
1 107 LEU n
1 108 ILE n
1 109 PRO n
1 110 LYS n
1 111 GLU n
1 112 GLY n
1 113 GLY n
1 114 GLU n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name bacteria
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene TM1459
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ?
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name bacteria
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ?
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type Plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name GB
_struct_ref.db_code NP_229258
_struct_ref.pdbx_db_accession 15644208
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;MILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEE
GFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEGGE
;
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1O5N A 1 ? 114 ? 15644208 1 ? 114 ? 1 114
2 1 1O5N B 1 ? 114 ? 15644208 1 ? 114 ? 1 114
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 1O5N MET A 1 ? GB 15644208 ? ? 'LEADER SEQUENCE' -11 1
1 1O5N GLY A 2 ? GB 15644208 ? ? 'LEADER SEQUENCE' -10 2
1 1O5N SER A 3 ? GB 15644208 ? ? 'LEADER SEQUENCE' -9 3
1 1O5N ASP A 4 ? GB 15644208 ? ? 'LEADER SEQUENCE' -8 4
1 1O5N LYS A 5 ? GB 15644208 ? ? 'LEADER SEQUENCE' -7 5
1 1O5N ILE A 6 ? GB 15644208 ? ? 'LEADER SEQUENCE' -6 6
1 1O5N HIS A 7 ? GB 15644208 ? ? 'LEADER SEQUENCE' -5 7
1 1O5N HIS A 8 ? GB 15644208 ? ? 'LEADER SEQUENCE' -4 8
1 1O5N HIS A 9 ? GB 15644208 ? ? 'LEADER SEQUENCE' -3 9
1 1O5N HIS A 10 ? GB 15644208 ? ? 'LEADER SEQUENCE' -2 10
1 1O5N HIS A 11 ? GB 15644208 ? ? 'LEADER SEQUENCE' -1 11
1 1O5N HIS A 12 ? GB 15644208 ? ? 'LEADER SEQUENCE' 0 12
2 1O5N MET B 1 ? GB 15644208 ? ? 'LEADER SEQUENCE' -11 13
2 1O5N GLY B 2 ? GB 15644208 ? ? 'LEADER SEQUENCE' -10 14
2 1O5N SER B 3 ? GB 15644208 ? ? 'LEADER SEQUENCE' -9 15
2 1O5N ASP B 4 ? GB 15644208 ? ? 'LEADER SEQUENCE' -8 16
2 1O5N LYS B 5 ? GB 15644208 ? ? 'LEADER SEQUENCE' -7 17
2 1O5N ILE B 6 ? GB 15644208 ? ? 'LEADER SEQUENCE' -6 18
2 1O5N HIS B 7 ? GB 15644208 ? ? 'LEADER SEQUENCE' -5 19
2 1O5N HIS B 8 ? GB 15644208 ? ? 'LEADER SEQUENCE' -4 20
2 1O5N HIS B 9 ? GB 15644208 ? ? 'LEADER SEQUENCE' -3 21
2 1O5N HIS B 10 ? GB 15644208 ? ? 'LEADER SEQUENCE' -2 22
2 1O5N HIS B 11 ? GB 15644208 ? ? 'LEADER SEQUENCE' -1 23
2 1O5N HIS B 12 ? GB 15644208 ? ? 'LEADER SEQUENCE' 0 24
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.crystals_number 1
_exptl.method 'X-RAY DIFFRACTION'
_exptl.entry_id 1O5N
#
_exptl_crystal.id 1
_exptl_crystal.density_percent_sol 54.20
_exptl_crystal.density_Matthews 2.71
_exptl_crystal.density_meas ?
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP'
_exptl_crystal_grow.pH 5.2
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.pdbx_details
'50% (v/v) PEG-200, 0.1M Phosphate-citrate pH 4.2 0.2M NaCl, pH 5.2, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'Quantum-315 CCD'
_diffrn_detector.type ADSC
_diffrn_detector.details 'flat mirror'
_diffrn_detector.pdbx_collection_date 2002-01-09
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'single crystal Si(311) bent monochromator'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.972386
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.pdbx_synchrotron_site SSRL
_diffrn_source.pdbx_synchrotron_beamline 11-1
_diffrn_source.type 'SSRL BEAMLINE 11-1'
_diffrn_source.pdbx_wavelength 0.972386
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.d_resolution_high 1.650
_reflns.d_resolution_low 48.13
_reflns.number_all 35029
_reflns.number_obs 35029
_reflns.percent_possible_obs 97.8
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_netI_over_av_sigmaI 15.6
_reflns.B_iso_Wilson_estimate 30.49
_reflns.pdbx_redundancy 3.6
_reflns.pdbx_Rsym_value 0.057
_reflns.entry_id 1O5N
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_netI_over_sigmaI ?
#
_reflns_shell.d_res_high 1.65
_reflns_shell.d_res_low 1.74
_reflns_shell.percent_possible_all 87.6
_reflns_shell.pdbx_Rsym_value 0.466
_reflns_shell.pdbx_redundancy 2.7
_reflns_shell.number_unique_all 4592
_reflns_shell.meanI_over_sigI_obs 1.9
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.ls_d_res_high 1.65
_refine.ls_d_res_low 33.07
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_obs 33262
_refine.ls_number_reflns_R_free 1729
_refine.ls_percent_reflns_R_free 4.9
_refine.ls_percent_reflns_obs 97.78
_refine.ls_R_factor_obs 0.21015
_refine.ls_R_factor_R_work 0.20817
_refine.ls_R_factor_R_free 0.24859
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 1FI2
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_isotropic_thermal_model ISOTROPIC
_refine.B_iso_mean 24.615
_refine.aniso_B[1][1] 0.98
_refine.aniso_B[2][2] 0.98
_refine.aniso_B[3][3] -1.47
_refine.aniso_B[1][2] 0.49
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.details
;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. THE BOUND METAL WAS IDENTIFIED AS TRANSITION METAL BY ITS COORDINATION GEOMETRY, AND AS MANGANESE BY COMPARISON WITH THE HOMOLOGOUS STRUCTURE TM1287 (1O4T) AS WELL AS BY HAVING BEST B-FACTOR AGREEMENT WITH SURROUNDING ATOMS.
;
_refine.pdbx_overall_ESU_R 0.100
_refine.pdbx_overall_ESU_R_Free 0.104
_refine.correlation_coeff_Fo_to_Fc 0.953
_refine.correlation_coeff_Fo_to_Fc_free 0.937
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.entry_id 1O5N
_refine.ls_R_factor_all ?
_refine.ls_number_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1850
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 2
_refine_hist.number_atoms_solvent 173
_refine_hist.number_atoms_total 2025
_refine_hist.d_res_high 1.65
_refine_hist.d_res_low 33.07
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 1890 0.018 0.022 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 1754 0.001 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2548 1.652 1.958 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 4090 0.854 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 226 6.971 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 92 32.829 23.913 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 350 18.157 15.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg 14 23.596 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 278 0.103 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 2070 0.007 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 382 0.001 0.020 ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 326 0.186 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbd_other 1738 0.193 0.200 ? 'X-RAY DIFFRACTION' ?
r_nbtor_other 1274 0.091 0.200 ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 2 0.054 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 9 0.137 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 26 0.272 0.200 ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 10 0.151 0.200 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 1472 1.179 1.500 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 1844 1.351 2.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 860 2.509 3.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 704 3.338 4.500 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.650
_refine_ls_shell.d_res_low 1.693
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.number_reflns_R_work 2159
_refine_ls_shell.R_factor_R_work 0.31
_refine_ls_shell.percent_reflns_R_free 4.43
_refine_ls_shell.number_reflns_R_free 100
_refine_ls_shell.R_factor_R_free 0.386
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 1O5N
_struct.title
'Crystal structure of hypothetical protein (TM1459) from Thermotoga maritima at 1.65 A resolution'
_struct.pdbx_descriptor 'conserved hypothetical protein TM1459'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.text 'TM1459, HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, JCSG, UNKNOWN FUNCTION'
_struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION'
_struct_keywords.entry_id 1O5N
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
E N N 3 ?
#
_struct_biol.details
;BIOMOLECULE: 1
THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT
WHICH CONSISTS OF 2 CHAIN(S). SEE FOR
INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S).
GENERATING THE BIOMOLECULE
COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
BIOMOLECULE: 1
APPLY THE FOLLOWING TO CHAINS: A
BIOMT1 1 1.000000 0.000000 0.000000 0.00000
BIOMT2 1 0.000000 1.000000 0.000000 0.00000
BIOMT3 1 0.000000 0.000000 1.000000 0.00000
;
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 TYR A 7 ? VAL A 9 ? TYR A 7 VAL A 9 5 ? 3
HELX_P HELX_P2 2 GLU A 111 ? GLY A 113 ? GLU A 111 GLY A 113 5 ? 3
HELX_P HELX_P3 3 TYR B 7 ? VAL B 9 ? TYR B 7 VAL B 9 5 ? 3
HELX_P HELX_P4 4 GLU B 111 ? GLY B 113 ? GLU B 111 GLY B 113 5 ? 3
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 7 ?
B ? 8 ?
C ? 6 ?
D ? 7 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
A 5 6 ? anti-parallel
A 6 7 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
B 5 6 ? anti-parallel
B 6 7 ? anti-parallel
B 7 8 ? anti-parallel
C 1 2 ? anti-parallel
C 2 3 ? anti-parallel
C 3 4 ? anti-parallel
C 4 5 ? anti-parallel
C 5 6 ? anti-parallel
D 1 2 ? anti-parallel
D 2 3 ? anti-parallel
D 3 4 ? anti-parallel
D 4 5 ? anti-parallel
D 5 6 ? anti-parallel
D 6 7 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 ILE A 2 ? ARG A 5 ? ILE A 2 ARG A 5
A 2 PHE B 82 ? VAL B 86 ? PHE B 82 VAL B 86
A 3 HIS B 58 ? LYS B 64 ? HIS B 58 LYS B 64
A 4 VAL B 102 ? PRO B 109 ? VAL B 102 PRO B 109
A 5 PHE B 36 ? HIS B 52 ? PHE B 36 HIS B 52
A 6 VAL B 19 ? ILE B 28 ? VAL B 19 ILE B 28
A 7 GLN B 12 ? SER B 15 ? GLN B 12 SER B 15
B 1 ILE A 2 ? ARG A 5 ? ILE A 2 ARG A 5
B 2 PHE B 82 ? VAL B 86 ? PHE B 82 VAL B 86
B 3 HIS B 58 ? LYS B 64 ? HIS B 58 LYS B 64
B 4 VAL B 102 ? PRO B 109 ? VAL B 102 PRO B 109
B 5 PHE B 36 ? HIS B 52 ? PHE B 36 HIS B 52
B 6 HIS B 92 ? ARG B 95 ? HIS B 92 ARG B 95
B 7 LYS B 66 ? LYS B 71 ? LYS B 66 LYS B 71
B 8 GLY B 74 ? GLU B 79 ? GLY B 74 GLU B 79
C 1 GLN A 12 ? ILE A 14 ? GLN A 12 ILE A 14
C 2 VAL A 19 ? ILE A 28 ? VAL A 19 ILE A 28
C 3 PHE A 36 ? HIS A 52 ? PHE A 36 HIS A 52
C 4 HIS A 92 ? ARG A 95 ? HIS A 92 ARG A 95
C 5 LYS A 66 ? LEU A 70 ? LYS A 66 LEU A 70
C 6 GLU A 75 ? GLU A 79 ? GLU A 75 GLU A 79
D 1 GLN A 12 ? ILE A 14 ? GLN A 12 ILE A 14
D 2 VAL A 19 ? ILE A 28 ? VAL A 19 ILE A 28
D 3 PHE A 36 ? HIS A 52 ? PHE A 36 HIS A 52
D 4 VAL A 102 ? PRO A 109 ? VAL A 102 PRO A 109
D 5 HIS A 58 ? LYS A 64 ? HIS A 58 LYS A 64
D 6 PHE A 82 ? VAL A 86 ? PHE A 82 VAL A 86
D 7 ILE B 2 ? ARG B 5 ? ILE B 2 ARG B 5
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N LYS A 4 ? N LYS A 4 O TYR B 83 ? O TYR B 83
A 2 3 O ILE B 84 ? O ILE B 84 N ILE B 60 ? N ILE B 60
A 3 4 N PHE B 61 ? N PHE B 61 O LEU B 105 ? O LEU B 105
A 4 5 O CYS B 106 ? O CYS B 106 N ARG B 39 ? N ARG B 39
A 5 6 O LEU B 40 ? O LEU B 40 N ARG B 25 ? N ARG B 25
A 6 7 O LYS B 24 ? O LYS B 24 N GLN B 12 ? N GLN B 12
B 1 2 N LYS A 4 ? N LYS A 4 O TYR B 83 ? O TYR B 83
B 2 3 O ILE B 84 ? O ILE B 84 N ILE B 60 ? N ILE B 60
B 3 4 N PHE B 61 ? N PHE B 61 O LEU B 105 ? O LEU B 105
B 4 5 O CYS B 106 ? O CYS B 106 N ARG B 39 ? N ARG B 39
B 5 6 N ILE B 49 ? N ILE B 49 O PHE B 94 ? O PHE B 94
B 6 7 O ARG B 95 ? O ARG B 95 N THR B 68 ? N THR B 68
B 7 8 N VAL B 69 ? N VAL B 69 O GLU B 76 ? O GLU B 76
C 1 2 N ILE A 14 ? N ILE A 14 O VAL A 22 ? O VAL A 22
C 2 3 N ARG A 25 ? N ARG A 25 O LEU A 40 ? O LEU A 40
C 3 4 N ILE A 49 ? N ILE A 49 O PHE A 94 ? O PHE A 94
C 4 5 O ARG A 95 ? O ARG A 95 N THR A 68 ? N THR A 68
C 5 6 N VAL A 69 ? N VAL A 69 O GLU A 76 ? O GLU A 76
D 1 2 N ILE A 14 ? N ILE A 14 O VAL A 22 ? O VAL A 22
D 2 3 N ARG A 25 ? N ARG A 25 O LEU A 40 ? O LEU A 40
D 3 4 N VAL A 43 ? N VAL A 43 O VAL A 102 ? O VAL A 102
D 4 5 O LEU A 107 ? O LEU A 107 N GLU A 59 ? N GLU A 59
D 5 6 N ILE A 60 ? N ILE A 60 O ILE A 84 ? O ILE A 84
D 6 7 N TYR A 83 ? N TYR A 83 O LYS B 4 ? O LYS B 4
#
_atom_sites.entry_id 1O5N
_atom_sites.fract_transf_matrix[1][1] 0.019029
_atom_sites.fract_transf_matrix[1][2] 0.010987
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.021973
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.010388
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MN
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 1 1 MET MET A . n
A 1 2 ILE 2 2 2 ILE ILE A . n
A 1 3 LEU 3 3 3 LEU LEU A . n
A 1 4 LYS 4 4 4 LYS LYS A . n
A 1 5 ARG 5 5 5 ARG ARG A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 TYR 7 7 7 TYR TYR A . n
A 1 8 ASP 8 8 8 ASP ASP A . n
A 1 9 VAL 9 9 9 VAL VAL A . n
A 1 10 THR 10 10 10 THR THR A . n
A 1 11 PRO 11 11 11 PRO PRO A . n
A 1 12 GLN 12 12 12 GLN GLN A . n
A 1 13 LYS 13 13 13 LYS LYS A . n
A 1 14 ILE 14 14 14 ILE ILE A . n
A 1 15 SER 15 15 15 SER SER A . n
A 1 16 THR 16 16 16 THR THR A . n
A 1 17 ASP 17 17 17 ASP ASP A . n
A 1 18 LYS 18 18 18 LYS LYS A . n
A 1 19 VAL 19 19 19 VAL VAL A . n
A 1 20 ARG 20 20 20 ARG ARG A . n
A 1 21 GLY 21 21 21 GLY GLY A . n
A 1 22 VAL 22 22 22 VAL VAL A . n
A 1 23 ARG 23 23 23 ARG ARG A . n
A 1 24 LYS 24 24 24 LYS LYS A . n
A 1 25 ARG 25 25 25 ARG ARG A . n
A 1 26 VAL 26 26 26 VAL VAL A . n
A 1 27 LEU 27 27 27 LEU LEU A . n
A 1 28 ILE 28 28 28 ILE ILE A . n
A 1 29 GLY 29 29 29 GLY GLY A . n
A 1 30 LEU 30 30 30 LEU LEU A . n
A 1 31 LYS 31 31 31 LYS LYS A . n
A 1 32 ASP 32 32 32 ASP ASP A . n
A 1 33 ALA 33 33 33 ALA ALA A . n
A 1 34 PRO 34 34 34 PRO PRO A . n
A 1 35 ASN 35 35 35 ASN ASN A . n
A 1 36 PHE 36 36 36 PHE PHE A . n
A 1 37 VAL 37 37 37 VAL VAL A . n
A 1 38 MET 38 38 38 MET MET A . n
A 1 39 ARG 39 39 39 ARG ARG A . n
A 1 40 LEU 40 40 40 LEU LEU A . n
A 1 41 PHE 41 41 41 PHE PHE A . n
A 1 42 THR 42 42 42 THR THR A . n
A 1 43 VAL 43 43 43 VAL VAL A . n
A 1 44 GLU 44 44 44 GLU GLU A . n
A 1 45 PRO 45 45 45 PRO PRO A . n
A 1 46 GLY 46 46 46 GLY GLY A . n
A 1 47 GLY 47 47 47 GLY GLY A . n
A 1 48 LEU 48 48 48 LEU LEU A . n
A 1 49 ILE 49 49 49 ILE ILE A . n
A 1 50 ASP 50 50 50 ASP ASP A . n
A 1 51 ARG 51 51 51 ARG ARG A . n
A 1 52 HIS 52 52 52 HIS HIS A . n
A 1 53 SER 53 53 53 SER SER A . n
A 1 54 HIS 54 54 54 HIS HIS A . n
A 1 55 PRO 55 55 55 PRO PRO A . n
A 1 56 TRP 56 56 56 TRP TRP A . n
A 1 57 GLU 57 57 57 GLU GLU A . n
A 1 58 HIS 58 58 58 HIS HIS A . n
A 1 59 GLU 59 59 59 GLU GLU A . n
A 1 60 ILE 60 60 60 ILE ILE A . n
A 1 61 PHE 61 61 61 PHE PHE A . n
A 1 62 VAL 62 62 62 VAL VAL A . n
A 1 63 LEU 63 63 63 LEU LEU A . n
A 1 64 LYS 64 64 64 LYS LYS A . n
A 1 65 GLY 65 65 65 GLY GLY A . n
A 1 66 LYS 66 66 66 LYS LYS A . n
A 1 67 LEU 67 67 67 LEU LEU A . n
A 1 68 THR 68 68 68 THR THR A . n
A 1 69 VAL 69 69 69 VAL VAL A . n
A 1 70 LEU 70 70 70 LEU LEU A . n
A 1 71 LYS 71 71 71 LYS LYS A . n
A 1 72 GLU 72 72 72 GLU GLU A . n
A 1 73 GLN 73 73 73 GLN GLN A . n
A 1 74 GLY 74 74 74 GLY GLY A . n
A 1 75 GLU 75 75 75 GLU GLU A . n
A 1 76 GLU 76 76 76 GLU GLU A . n
A 1 77 THR 77 77 77 THR THR A . n
A 1 78 VAL 78 78 78 VAL VAL A . n
A 1 79 GLU 79 79 79 GLU GLU A . n
A 1 80 GLU 80 80 80 GLU GLU A . n
A 1 81 GLY 81 81 81 GLY GLY A . n
A 1 82 PHE 82 82 82 PHE PHE A . n
A 1 83 TYR 83 83 83 TYR TYR A . n
A 1 84 ILE 84 84 84 ILE ILE A . n
A 1 85 PHE 85 85 85 PHE PHE A . n
A 1 86 VAL 86 86 86 VAL VAL A . n
A 1 87 GLU 87 87 87 GLU GLU A . n
A 1 88 PRO 88 88 88 PRO PRO A . n
A 1 89 ASN 89 89 89 ASN ASN A . n
A 1 90 GLU 90 90 90 GLU GLU A . n
A 1 91 ILE 91 91 91 ILE ILE A . n
A 1 92 HIS 92 92 92 HIS HIS A . n
A 1 93 GLY 93 93 93 GLY GLY A . n
A 1 94 PHE 94 94 94 PHE PHE A . n
A 1 95 ARG 95 95 95 ARG ARG A . n
A 1 96 ASN 96 96 96 ASN ASN A . n
A 1 97 ASP 97 97 97 ASP ASP A . n
A 1 98 THR 98 98 98 THR THR A . n
A 1 99 ASP 99 99 99 ASP ASP A . n
A 1 100 SER 100 100 100 SER SER A . n
A 1 101 GLU 101 101 101 GLU GLU A . n
A 1 102 VAL 102 102 102 VAL VAL A . n
A 1 103 GLU 103 103 103 GLU GLU A . n
A 1 104 PHE 104 104 104 PHE PHE A . n
A 1 105 LEU 105 105 105 LEU LEU A . n
A 1 106 CYS 106 106 106 CYS CYS A . n
A 1 107 LEU 107 107 107 LEU LEU A . n
A 1 108 ILE 108 108 108 ILE ILE A . n
A 1 109 PRO 109 109 109 PRO PRO A . n
A 1 110 LYS 110 110 110 LYS LYS A . n
A 1 111 GLU 111 111 111 GLU GLU A . n
A 1 112 GLY 112 112 112 GLY GLY A . n
A 1 113 GLY 113 113 113 GLY GLY A . n
A 1 114 GLU 114 114 114 GLU GLU A . n
B 1 1 MET 1 1 1 MET MET B . n
B 1 2 ILE 2 2 2 ILE ILE B . n
B 1 3 LEU 3 3 3 LEU LEU B . n
B 1 4 LYS 4 4 4 LYS LYS B . n
B 1 5 ARG 5 5 5 ARG ARG B . n
B 1 6 ALA 6 6 6 ALA ALA B . n
B 1 7 TYR 7 7 7 TYR TYR B . n
B 1 8 ASP 8 8 8 ASP ASP B . n
B 1 9 VAL 9 9 9 VAL VAL B . n
B 1 10 THR 10 10 10 THR THR B . n
B 1 11 PRO 11 11 11 PRO PRO B . n
B 1 12 GLN 12 12 12 GLN GLN B . n
B 1 13 LYS 13 13 13 LYS LYS B . n
B 1 14 ILE 14 14 14 ILE ILE B . n
B 1 15 SER 15 15 15 SER SER B . n
B 1 16 THR 16 16 16 THR THR B . n
B 1 17 ASP 17 17 17 ASP ASP B . n
B 1 18 LYS 18 18 18 LYS LYS B . n
B 1 19 VAL 19 19 19 VAL VAL B . n
B 1 20 ARG 20 20 20 ARG ARG B . n
B 1 21 GLY 21 21 21 GLY GLY B . n
B 1 22 VAL 22 22 22 VAL VAL B . n
B 1 23 ARG 23 23 23 ARG ARG B . n
B 1 24 LYS 24 24 24 LYS LYS B . n
B 1 25 ARG 25 25 25 ARG ARG B . n
B 1 26 VAL 26 26 26 VAL VAL B . n
B 1 27 LEU 27 27 27 LEU LEU B . n
B 1 28 ILE 28 28 28 ILE ILE B . n
B 1 29 GLY 29 29 29 GLY GLY B . n
B 1 30 LEU 30 30 30 LEU LEU B . n
B 1 31 LYS 31 31 31 LYS LYS B . n
B 1 32 ASP 32 32 32 ASP ASP B . n
B 1 33 ALA 33 33 33 ALA ALA B . n
B 1 34 PRO 34 34 34 PRO PRO B . n
B 1 35 ASN 35 35 35 ASN ASN B . n
B 1 36 PHE 36 36 36 PHE PHE B . n
B 1 37 VAL 37 37 37 VAL VAL B . n
B 1 38 MET 38 38 38 MET MET B . n
B 1 39 ARG 39 39 39 ARG ARG B . n
B 1 40 LEU 40 40 40 LEU LEU B . n
B 1 41 PHE 41 41 41 PHE PHE B . n
B 1 42 THR 42 42 42 THR THR B . n
B 1 43 VAL 43 43 43 VAL VAL B . n
B 1 44 GLU 44 44 44 GLU GLU B . n
B 1 45 PRO 45 45 45 PRO PRO B . n
B 1 46 GLY 46 46 46 GLY GLY B . n
B 1 47 GLY 47 47 47 GLY GLY B . n
B 1 48 LEU 48 48 48 LEU LEU B . n
B 1 49 ILE 49 49 49 ILE ILE B . n
B 1 50 ASP 50 50 50 ASP ASP B . n
B 1 51 ARG 51 51 51 ARG ARG B . n
B 1 52 HIS 52 52 52 HIS HIS B . n
B 1 53 SER 53 53 53 SER SER B . n
B 1 54 HIS 54 54 54 HIS HIS B . n
B 1 55 PRO 55 55 55 PRO PRO B . n
B 1 56 TRP 56 56 56 TRP TRP B . n
B 1 57 GLU 57 57 57 GLU GLU B . n
B 1 58 HIS 58 58 58 HIS HIS B . n
B 1 59 GLU 59 59 59 GLU GLU B . n
B 1 60 ILE 60 60 60 ILE ILE B . n
B 1 61 PHE 61 61 61 PHE PHE B . n
B 1 62 VAL 62 62 62 VAL VAL B . n
B 1 63 LEU 63 63 63 LEU LEU B . n
B 1 64 LYS 64 64 64 LYS LYS B . n
B 1 65 GLY 65 65 65 GLY GLY B . n
B 1 66 LYS 66 66 66 LYS LYS B . n
B 1 67 LEU 67 67 67 LEU LEU B . n
B 1 68 THR 68 68 68 THR THR B . n
B 1 69 VAL 69 69 69 VAL VAL B . n
B 1 70 LEU 70 70 70 LEU LEU B . n
B 1 71 LYS 71 71 71 LYS LYS B . n
B 1 72 GLU 72 72 72 GLU GLU B . n
B 1 73 GLN 73 73 73 GLN GLN B . n
B 1 74 GLY 74 74 74 GLY GLY B . n
B 1 75 GLU 75 75 75 GLU GLU B . n
B 1 76 GLU 76 76 76 GLU GLU B . n
B 1 77 THR 77 77 77 THR THR B . n
B 1 78 VAL 78 78 78 VAL VAL B . n
B 1 79 GLU 79 79 79 GLU GLU B . n
B 1 80 GLU 80 80 80 GLU GLU B . n
B 1 81 GLY 81 81 81 GLY GLY B . n
B 1 82 PHE 82 82 82 PHE PHE B . n
B 1 83 TYR 83 83 83 TYR TYR B . n
B 1 84 ILE 84 84 84 ILE ILE B . n
B 1 85 PHE 85 85 85 PHE PHE B . n
B 1 86 VAL 86 86 86 VAL VAL B . n
B 1 87 GLU 87 87 87 GLU GLU B . n
B 1 88 PRO 88 88 88 PRO PRO B . n
B 1 89 ASN 89 89 89 ASN ASN B . n
B 1 90 GLU 90 90 90 GLU GLU B . n
B 1 91 ILE 91 91 91 ILE ILE B . n
B 1 92 HIS 92 92 92 HIS HIS B . n
B 1 93 GLY 93 93 93 GLY GLY B . n
B 1 94 PHE 94 94 94 PHE PHE B . n
B 1 95 ARG 95 95 95 ARG ARG B . n
B 1 96 ASN 96 96 96 ASN ASN B . n
B 1 97 ASP 97 97 97 ASP ASP B . n
B 1 98 THR 98 98 98 THR THR B . n
B 1 99 ASP 99 99 99 ASP ASP B . n
B 1 100 SER 100 100 100 SER SER B . n
B 1 101 GLU 101 101 101 GLU GLU B . n
B 1 102 VAL 102 102 102 VAL VAL B . n
B 1 103 GLU 103 103 103 GLU GLU B . n
B 1 104 PHE 104 104 104 PHE PHE B . n
B 1 105 LEU 105 105 105 LEU LEU B . n
B 1 106 CYS 106 106 106 CYS CYS B . n
B 1 107 LEU 107 107 107 LEU LEU B . n
B 1 108 ILE 108 108 108 ILE ILE B . n
B 1 109 PRO 109 109 109 PRO PRO B . n
B 1 110 LYS 110 110 110 LYS LYS B . n
B 1 111 GLU 111 111 111 GLU GLU B . n
B 1 112 GLY 112 112 112 GLY GLY B . n
B 1 113 GLY 113 113 113 GLY GLY B . n
B 1 114 GLU 114 114 114 GLU GLU B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN 1 115 115 MN MN A .
D 2 MN 1 115 115 MN MN B .
E 3 HOH 1 3 3 HOH HOH ? .
E 3 HOH 2 4 4 HOH HOH ? .
E 3 HOH 3 5 5 HOH HOH ? .
E 3 HOH 4 6 6 HOH HOH ? .
E 3 HOH 5 7 7 HOH HOH ? .
E 3 HOH 6 8 8 HOH HOH ? .
E 3 HOH 7 9 9 HOH HOH ? .
E 3 HOH 8 10 10 HOH HOH ? .
E 3 HOH 9 11 11 HOH HOH ? .
E 3 HOH 10 12 12 HOH HOH ? .
E 3 HOH 11 13 13 HOH HOH ? .
E 3 HOH 12 14 14 HOH HOH ? .
E 3 HOH 13 15 15 HOH HOH ? .
E 3 HOH 14 16 16 HOH HOH ? .
E 3 HOH 15 17 17 HOH HOH ? .
E 3 HOH 16 18 18 HOH HOH ? .
E 3 HOH 17 19 19 HOH HOH ? .
E 3 HOH 18 20 20 HOH HOH ? .
E 3 HOH 19 21 21 HOH HOH ? .
E 3 HOH 20 22 22 HOH HOH ? .
E 3 HOH 21 23 23 HOH HOH ? .
E 3 HOH 22 24 24 HOH HOH ? .
E 3 HOH 23 25 25 HOH HOH ? .
E 3 HOH 24 26 26 HOH HOH ? .
E 3 HOH 25 27 27 HOH HOH ? .
E 3 HOH 26 28 28 HOH HOH ? .
E 3 HOH 27 29 29 HOH HOH ? .
E 3 HOH 28 30 30 HOH HOH ? .
E 3 HOH 29 31 31 HOH HOH ? .
E 3 HOH 30 32 32 HOH HOH ? .
E 3 HOH 31 33 33 HOH HOH ? .
E 3 HOH 32 34 34 HOH HOH ? .
E 3 HOH 33 35 35 HOH HOH ? .
E 3 HOH 34 36 36 HOH HOH ? .
E 3 HOH 35 37 37 HOH HOH ? .
E 3 HOH 36 38 38 HOH HOH ? .
E 3 HOH 37 39 39 HOH HOH ? .
E 3 HOH 38 40 40 HOH HOH ? .
E 3 HOH 39 41 41 HOH HOH ? .
E 3 HOH 40 42 42 HOH HOH ? .
E 3 HOH 41 43 43 HOH HOH ? .
E 3 HOH 42 44 44 HOH HOH ? .
E 3 HOH 43 45 45 HOH HOH ? .
E 3 HOH 44 46 46 HOH HOH ? .
E 3 HOH 45 47 47 HOH HOH ? .
E 3 HOH 46 48 48 HOH HOH ? .
E 3 HOH 47 49 49 HOH HOH ? .
E 3 HOH 48 50 50 HOH HOH ? .
E 3 HOH 49 51 51 HOH HOH ? .
E 3 HOH 50 52 52 HOH HOH ? .
E 3 HOH 51 53 53 HOH HOH ? .
E 3 HOH 52 54 54 HOH HOH ? .
E 3 HOH 53 55 55 HOH HOH ? .
E 3 HOH 54 56 56 HOH HOH ? .
E 3 HOH 55 57 57 HOH HOH ? .
E 3 HOH 56 58 58 HOH HOH ? .
E 3 HOH 57 59 59 HOH HOH ? .
E 3 HOH 58 60 60 HOH HOH ? .
E 3 HOH 59 61 61 HOH HOH ? .
E 3 HOH 60 62 62 HOH HOH ? .
E 3 HOH 61 63 63 HOH HOH ? .
E 3 HOH 62 64 64 HOH HOH ? .
E 3 HOH 63 65 65 HOH HOH ? .
E 3 HOH 64 66 66 HOH HOH ? .
E 3 HOH 65 67 67 HOH HOH ? .
E 3 HOH 66 68 68 HOH HOH ? .
E 3 HOH 67 69 69 HOH HOH ? .
E 3 HOH 68 71 71 HOH HOH ? .
E 3 HOH 69 73 73 HOH HOH ? .
E 3 HOH 70 74 74 HOH HOH ? .
E 3 HOH 71 75 75 HOH HOH ? .
E 3 HOH 72 77 77 HOH HOH ? .
E 3 HOH 73 78 78 HOH HOH ? .
E 3 HOH 74 83 83 HOH HOH ? .
E 3 HOH 75 84 84 HOH HOH ? .
E 3 HOH 76 86 86 HOH HOH ? .
E 3 HOH 77 89 89 HOH HOH ? .
E 3 HOH 78 92 92 HOH HOH ? .
E 3 HOH 79 113 113 HOH HOH ? .
E 3 HOH 80 115 115 HOH HOH ? .
E 3 HOH 81 116 116 HOH HOH ? .
E 3 HOH 82 120 120 HOH HOH ? .
E 3 HOH 83 123 123 HOH HOH ? .
E 3 HOH 84 132 132 HOH HOH ? .
E 3 HOH 85 154 154 HOH HOH ? .
E 3 HOH 86 155 155 HOH HOH ? .
E 3 HOH 87 156 156 HOH HOH ? .
E 3 HOH 88 157 157 HOH HOH ? .
E 3 HOH 89 158 158 HOH HOH ? .
E 3 HOH 90 159 159 HOH HOH ? .
E 3 HOH 91 160 160 HOH HOH ? .
E 3 HOH 92 161 161 HOH HOH ? .
E 3 HOH 93 162 162 HOH HOH ? .
E 3 HOH 94 163 163 HOH HOH ? .
E 3 HOH 95 164 164 HOH HOH ? .
E 3 HOH 96 165 165 HOH HOH ? .
E 3 HOH 97 166 166 HOH HOH ? .
E 3 HOH 98 167 167 HOH HOH ? .
E 3 HOH 99 168 168 HOH HOH ? .
E 3 HOH 100 169 169 HOH HOH ? .
E 3 HOH 101 170 170 HOH HOH ? .
E 3 HOH 102 171 171 HOH HOH ? .
E 3 HOH 103 172 172 HOH HOH ? .
E 3 HOH 104 173 173 HOH HOH ? .
E 3 HOH 105 174 174 HOH HOH ? .
E 3 HOH 106 175 175 HOH HOH ? .
E 3 HOH 107 176 176 HOH HOH ? .
E 3 HOH 108 177 177 HOH HOH ? .
E 3 HOH 109 178 178 HOH HOH ? .
E 3 HOH 110 179 179 HOH HOH ? .
E 3 HOH 111 180 180 HOH HOH ? .
E 3 HOH 112 182 182 HOH HOH ? .
E 3 HOH 113 183 183 HOH HOH ? .
E 3 HOH 114 184 184 HOH HOH ? .
E 3 HOH 115 185 185 HOH HOH ? .
E 3 HOH 116 186 186 HOH HOH ? .
E 3 HOH 117 187 187 HOH HOH ? .
E 3 HOH 118 188 188 HOH HOH ? .
E 3 HOH 119 189 189 HOH HOH ? .
E 3 HOH 120 190 190 HOH HOH ? .
E 3 HOH 121 191 191 HOH HOH ? .
E 3 HOH 122 192 192 HOH HOH ? .
E 3 HOH 123 193 193 HOH HOH ? .
E 3 HOH 124 194 194 HOH HOH ? .
E 3 HOH 125 195 195 HOH HOH ? .
E 3 HOH 126 196 196 HOH HOH ? .
E 3 HOH 127 197 197 HOH HOH ? .
E 3 HOH 128 198 198 HOH HOH ? .
E 3 HOH 129 199 199 HOH HOH ? .
E 3 HOH 130 200 200 HOH HOH ? .
E 3 HOH 131 201 201 HOH HOH ? .
E 3 HOH 132 202 202 HOH HOH ? .
E 3 HOH 133 203 203 HOH HOH ? .
E 3 HOH 134 204 204 HOH HOH ? .
E 3 HOH 135 205 205 HOH HOH ? .
E 3 HOH 136 206 206 HOH HOH ? .
E 3 HOH 137 207 207 HOH HOH ? .
E 3 HOH 138 208 208 HOH HOH ? .
E 3 HOH 139 209 209 HOH HOH ? .
E 3 HOH 140 211 211 HOH HOH ? .
E 3 HOH 141 212 212 HOH HOH ? .
E 3 HOH 142 213 213 HOH HOH ? .
E 3 HOH 143 214 214 HOH HOH ? .
E 3 HOH 144 215 215 HOH HOH ? .
E 3 HOH 145 216 216 HOH HOH ? .
E 3 HOH 146 217 217 HOH HOH ? .
E 3 HOH 147 219 219 HOH HOH ? .
E 3 HOH 148 225 225 HOH HOH ? .
E 3 HOH 149 226 226 HOH HOH ? .
E 3 HOH 150 227 227 HOH HOH ? .
E 3 HOH 151 228 228 HOH HOH ? .
E 3 HOH 152 229 229 HOH HOH ? .
E 3 HOH 153 231 231 HOH HOH ? .
E 3 HOH 154 232 232 HOH HOH ? .
E 3 HOH 155 233 233 HOH HOH ? .
E 3 HOH 156 234 234 HOH HOH ? .
E 3 HOH 157 235 235 HOH HOH ? .
E 3 HOH 158 236 236 HOH HOH ? .
E 3 HOH 159 237 237 HOH HOH ? .
E 3 HOH 160 238 238 HOH HOH ? .
E 3 HOH 161 239 239 HOH HOH ? .
E 3 HOH 162 240 240 HOH HOH ? .
E 3 HOH 163 241 241 HOH HOH ? .
E 3 HOH 164 242 242 HOH HOH ? .
E 3 HOH 165 243 243 HOH HOH ? .
E 3 HOH 166 244 244 HOH HOH ? .
E 3 HOH 167 246 246 HOH HOH ? .
E 3 HOH 168 247 247 HOH HOH ? .
E 3 HOH 169 248 248 HOH HOH ? .
E 3 HOH 170 249 249 HOH HOH ? .
E 3 HOH 171 250 250 HOH HOH ? .
E 3 HOH 172 251 251 HOH HOH ? .
E 3 HOH 173 252 252 HOH HOH ? .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2003-10-07
2 'Structure model' 1 1 2003-12-09
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
1 1 'Structure model' repository 'Initial release' ?
2 2 'Structure model' repository Obsolete ?
#
loop_
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[3][3]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.pdbx_refine_id
1 . refined 30.9488 2.1018 -1.1180 -0.0697 -0.1221 -0.0714 -0.0759 0.0396 -0.0145 1.0866 2.5819 3.0850 0.2610 0.1628 0.1244
-0.1230 0.1545 -0.0314 0.1356 0.0144 -0.2043 -0.2357 -0.0159 0.1418 'X-RAY DIFFRACTION'
2 . refined 32.7388 -0.6700 20.0896 -0.0513 -0.1289 -0.0508 0.0795 -0.0339 -0.0264 0.7375 2.6298 3.1667 -0.2080 -0.3128 -0.0480
-0.1185 0.1742 -0.0557 -0.0741 -0.0578 -0.2228 0.2293 0.1390 0.2142 'X-RAY DIFFRACTION'
#
loop_
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection_details
1 1 A 6 A 114 ALL 'X-RAY DIFFRACTION' ? ? ? ? ?
2 1 B 1 B 5 ALL 'X-RAY DIFFRACTION' ? ? ? ? ?
3 2 B 6 B 114 ALL 'X-RAY DIFFRACTION' ? ? ? ? ?
4 2 A 1 A 5 ALL 'X-RAY DIFFRACTION' ? ? ? ? ?
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MOSFLM 'data collection' . ? 1
'SCALA(CCP4' 'data reduction' '4.2)' ? 2
MOLREP 'model building' . ? 3
'REFMAC(5.1.9999)' refinement . ? 4
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O . HOH 71 ? ? O . HOH 234 ? ? 1.79
2 1 O . HOH 74 ? ? O . HOH 237 ? ? 2.08
3 1 O . HOH 68 ? ? O . HOH 89 ? ? 2.14
4 1 O . HOH 164 ? ? O . HOH 196 ? ? 2.14
5 1 O . HOH 68 ? ? O . HOH 233 ? ? 2.15
6 1 OH A TYR 7 ? ? OE2 A GLU 103 ? ? 2.16
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CB A ASP 97 ? ? CG A ASP 97 ? ? OD2 A ASP 97 ? ? 124.15 118.30 5.85 0.90 N
2 1 NE B ARG 95 ? ? CZ B ARG 95 ? ? NH1 B ARG 95 ? ? 123.78 120.30 3.48 0.50 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ASN A 35 ? ? -124.48 -52.24
2 1 PRO A 55 ? ? -74.45 38.54
3 1 GLU A 80 ? ? -39.99 126.95
4 1 ASN B 35 ? ? -130.21 -48.96
5 1 PRO B 55 ? ? -80.46 38.35
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MANGANESE (II) ION' MN
3 water HOH
#