HEADER LIGASE 10-OCT-03 1O5Z TITLE CRYSTAL STRUCTURE OF FOLYLPOLYGLUTAMATE SYNTHASE (TM0166) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOLYLPOLYGLUTAMATE SYNTHASE/DIHYDROFOLATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM0166; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM0166, FOLYLPOLYGLUTAMATE SYNTHASE, STRUCTURAL GENOMICS, JCSG, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 20-SEP-23 1O5Z 1 REMARK REVDAT 8 25-JAN-23 1O5Z 1 REMARK SEQADV REVDAT 7 18-JUL-18 1O5Z 1 REMARK REVDAT 6 04-OCT-17 1O5Z 1 REMARK REVDAT 5 13-JUL-11 1O5Z 1 VERSN REVDAT 4 24-FEB-09 1O5Z 1 VERSN REVDAT 3 28-MAR-06 1O5Z 1 JRNL REVDAT 2 18-JAN-05 1O5Z 1 AUTHOR KEYWDS REMARK REVDAT 1 11-NOV-03 1O5Z 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF FOLYLPOLYGLUTAMATE SYNTHASE (TM0166) JRNL TITL 2 FROM THERMOTOGA MARITIMA AT 2.10 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 31388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 46.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.56000 REMARK 3 B22 (A**2) : -1.56000 REMARK 3 B33 (A**2) : 2.34000 REMARK 3 B12 (A**2) : -0.78000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3437 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3204 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4637 ; 1.690 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7447 ; 0.878 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 6.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;37.637 ;23.896 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;17.419 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3735 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 683 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 831 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3634 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2261 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 248 ; 0.214 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.287 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.312 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.290 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2243 ; 0.945 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3384 ; 1.349 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1472 ; 2.215 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1253 ; 3.403 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9696 3.8689 106.0164 REMARK 3 T TENSOR REMARK 3 T11: -0.1893 T22: -0.2511 REMARK 3 T33: -0.1611 T12: -0.0361 REMARK 3 T13: 0.0090 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.0727 L22: 1.6640 REMARK 3 L33: 3.7148 L12: 0.0294 REMARK 3 L13: 0.3223 L23: -0.7572 REMARK 3 S TENSOR REMARK 3 S11: 0.1552 S12: -0.1327 S13: 0.0698 REMARK 3 S21: 0.1467 S22: -0.0379 S23: 0.1315 REMARK 3 S31: -0.2305 S32: 0.0812 S33: -0.1173 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 294 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): 58.1688 -0.9186 108.5032 REMARK 3 T TENSOR REMARK 3 T11: -0.1497 T22: -0.1459 REMARK 3 T33: -0.1224 T12: -0.0310 REMARK 3 T13: 0.0315 T23: -0.0945 REMARK 3 L TENSOR REMARK 3 L11: 5.5394 L22: 4.5437 REMARK 3 L33: 4.0782 L12: 0.4195 REMARK 3 L13: 0.5225 L23: 3.1677 REMARK 3 S TENSOR REMARK 3 S11: 0.1496 S12: -0.2496 S13: 0.4727 REMARK 3 S21: -0.0247 S22: 0.0661 S23: -0.3336 REMARK 3 S31: -0.2954 S32: 0.0307 S33: -0.2156 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 504 A 504 REMARK 3 ORIGIN FOR THE GROUP (A): 66.4947 3.7049 93.8952 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.1476 REMARK 3 T33: 0.1575 T12: 0.0512 REMARK 3 T13: 0.0598 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 514.6232 L22: 565.7059 REMARK 3 L33: 533.3522 L12:-158.2912 REMARK 3 L13:-200.8499 L23: 97.8641 REMARK 3 S TENSOR REMARK 3 S11: 0.4665 S12: -0.3681 S13: -0.9422 REMARK 3 S21: 1.6884 S22: -0.5417 S23: -0.6157 REMARK 3 S31: -0.4614 S32: 1.4909 S33: 0.0752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. SULFATE AND CHLORIDE WERE IN THE REMARK 3 CRYSTALLIZATION AND PROTEIN BUFFERS RESPECTIVELY 3. A SEPARATE REMARK 3 TLS GROUP WAS DEFINED FOR SULFATE 504 SINCE IT APPEARED REMARK 3 DIRECTIONALLY DISORDERED. 4. CONTINUOUS, NON-PROTEIN SURFACE REMARK 3 DENSITY WAS MODELED AS RESIDUE UNL, OXYGENS IN AN UNKNOWN LIGAND, REMARK 3 701-702. THESE ATOMS WERE ASSIGNED A V/D WAALS RADIUS OF ZERO REMARK 3 DURING REFINEMENT. REMARK 4 REMARK 4 1O5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000001837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33188 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.570 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.86 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1FGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SULFATE, 20% W/V/ PEG REMARK 280 3350, PH6.7, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.55967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 187.11933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 140.33950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 233.89917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.77983 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.55967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 187.11933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 233.89917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.33950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.77983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 903 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 920 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1002 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 MET A 16 REMARK 465 GLY A 17 REMARK 465 LYS A 18 REMARK 465 ASP A 169 REMARK 465 HIS A 170 REMARK 465 GLU A 171 REMARK 465 LYS A 172 REMARK 465 THR A 173 REMARK 465 LEU A 174 REMARK 465 GLY A 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 229 CD CE NZ REMARK 470 LYS A 384 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 802 O HOH A 853 1.82 REMARK 500 O HOH A 725 O HOH A 915 2.03 REMARK 500 NE ARG A 350 O HOH A 798 2.15 REMARK 500 O ASN A 108 O HOH A 805 2.15 REMARK 500 ND1 HIS A 236 O HOH A 1009 2.16 REMARK 500 O TYR A 9 ND1 HIS A 12 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 81 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 167 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 218 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 218 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 75 -135.72 -86.58 REMARK 500 ARG A 192 -3.25 68.78 REMARK 500 ASP A 223 -23.61 66.69 REMARK 500 LYS A 224 -73.95 -85.22 REMARK 500 SER A 232 139.11 -173.78 REMARK 500 HIS A 236 14.10 59.53 REMARK 500 GLU A 237 61.95 -157.01 REMARK 500 ALA A 311 128.49 -33.77 REMARK 500 HIS A 312 18.59 -146.49 REMARK 500 SER A 366 137.50 -177.08 REMARK 500 VAL A 386 126.24 -34.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 385 VAL A 386 -143.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 CONTINUOUS, NON-PROTEIN SURFACE DENSITY WAS REMARK 600 MODELED AS RESIDUE UNL, OXYGENS IN AN UNKNOWN REMARK 600 LIGAND, 701-702. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282046 RELATED DB: TARGETDB DBREF 1O5Z A 1 430 UNP Q9WY13 Q9WY13_THEMA 1 430 SEQADV 1O5Z MET A -11 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z GLY A -10 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z SER A -9 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z ASP A -8 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z LYS A -7 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z ILE A -6 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z HIS A -5 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z HIS A -4 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z HIS A -3 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z HIS A -2 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z HIS A -1 UNP Q9WY13 EXPRESSION TAG SEQADV 1O5Z HIS A 0 UNP Q9WY13 EXPRESSION TAG SEQRES 1 A 442 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 442 ALA TYR LEU GLU VAL LEU ARG TYR LEU TYR HIS LYS ARG SEQRES 3 A 442 PRO MET GLY LYS VAL LYS PRO GLY LEU GLU ARG ILE SER SEQRES 4 A 442 MET LEU LEU SER LYS LEU GLY ASN PRO HIS LEU GLU TYR SEQRES 5 A 442 LYS THR ILE HIS ILE GLY GLY THR ASN GLY LYS GLY SER SEQRES 6 A 442 VAL ALA ASN MET VAL SER ASN ILE LEU VAL SER GLN GLY SEQRES 7 A 442 TYR ARG VAL GLY SER TYR TYR SER PRO HIS LEU SER THR SEQRES 8 A 442 PHE ARG GLU ARG ILE ARG LEU ASN GLU GLU TYR ILE SER SEQRES 9 A 442 GLU GLU ASP VAL VAL LYS ILE TYR GLU THR MET GLU PRO SEQRES 10 A 442 ILE LEU ASN GLU LEU ASP LYS GLU GLU ILE PHE SER PRO SEQRES 11 A 442 SER PHE PHE GLU VAL VAL THR ALA MET ALA PHE LEU TYR SEQRES 12 A 442 PHE ALA GLU LYS ASN VAL ASP ILE ALA VAL LEU GLU VAL SEQRES 13 A 442 GLY LEU GLY GLY ARG LEU ASP ALA THR ASN VAL VAL PHE SEQRES 14 A 442 PRO LEU CYS SER THR ILE VAL THR VAL ASP ARG ASP HIS SEQRES 15 A 442 GLU LYS THR LEU GLY TYR THR ILE GLU GLN ILE ALA TRP SEQRES 16 A 442 GLU LYS SER GLY ILE ILE LYS GLU ARG VAL PRO LEU VAL SEQRES 17 A 442 THR GLY GLU ARG LYS ARG GLU ALA LEU LYS VAL MET GLU SEQRES 18 A 442 ASP VAL ALA ARG LYS LYS SER SER ARG MET TYR VAL ILE SEQRES 19 A 442 ASP LYS ASP PHE SER VAL LYS VAL LYS SER LEU LYS LEU SEQRES 20 A 442 HIS GLU ASN ARG PHE ASP TYR CYS GLY GLU ASN THR PHE SEQRES 21 A 442 GLU ASP LEU VAL LEU THR MET ASN GLY PRO HIS GLN ILE SEQRES 22 A 442 GLU ASN ALA GLY VAL ALA LEU LYS THR LEU GLU ALA THR SEQRES 23 A 442 GLY LEU PRO LEU SER GLU LYS ALA ILE ARG GLU GLY LEU SEQRES 24 A 442 LYS ASN ALA LYS ASN LEU GLY ARG PHE GLU ILE LEU GLU SEQRES 25 A 442 LYS ASN GLY LYS MET TYR ILE LEU ASP GLY ALA HIS ASN SEQRES 26 A 442 PRO HIS GLY ALA GLU SER LEU VAL ARG SER LEU LYS LEU SEQRES 27 A 442 TYR PHE ASN GLY GLU PRO LEU SER LEU VAL ILE GLY ILE SEQRES 28 A 442 LEU ASP ASP LYS ASN ARG GLU ASP ILE LEU ARG LYS TYR SEQRES 29 A 442 THR GLY ILE PHE GLU ARG VAL ILE VAL THR ARG VAL PRO SEQRES 30 A 442 SER PRO ARG MET LYS ASP MET ASN SER LEU VAL ASP MET SEQRES 31 A 442 ALA LYS LYS PHE PHE LYS ASN VAL GLU VAL ILE GLU ASP SEQRES 32 A 442 PRO LEU GLU ALA ILE GLU SER THR GLU ARG ALA THR VAL SEQRES 33 A 442 VAL THR GLY SER LEU PHE LEU VAL GLY TYR VAL ARG GLU SEQRES 34 A 442 PHE LEU THR THR GLY LYS ILE ASN GLU GLU TRP LYS LEU HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET CL A 601 1 HET CL A 602 1 HET UNL A 701 5 HET UNL A 702 4 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM UNL UNKNOWN LIGAND FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 CL 2(CL 1-) FORMUL 10 HOH *323(H2 O) HELIX 1 1 HIS A -1 HIS A 12 1 14 HELIX 2 2 LEU A 23 LEU A 33 1 11 HELIX 3 3 ASN A 35 GLU A 39 5 5 HELIX 4 4 GLY A 50 GLY A 66 1 17 HELIX 5 5 THR A 79 GLU A 82 5 4 HELIX 6 6 SER A 92 ASP A 111 1 20 HELIX 7 7 SER A 119 LYS A 135 1 17 HELIX 8 8 ASP A 151 VAL A 156 5 6 HELIX 9 9 THR A 177 SER A 186 1 10 HELIX 10 10 GLY A 187 ILE A 189 5 3 HELIX 11 11 LYS A 201 SER A 216 1 16 HELIX 12 12 PRO A 258 GLY A 275 1 18 HELIX 13 13 SER A 279 ALA A 290 1 12 HELIX 14 14 ASN A 313 PHE A 328 1 16 HELIX 15 15 ASN A 344 ARG A 350 1 7 HELIX 16 16 LYS A 351 THR A 353 5 3 HELIX 17 17 ASP A 371 PHE A 383 1 13 HELIX 18 18 ASP A 391 SER A 398 1 8 HELIX 19 19 SER A 408 GLY A 422 1 15 HELIX 20 20 ASN A 425 LEU A 430 5 6 SHEET 1 A 8 GLU A 89 TYR A 90 0 SHEET 2 A 8 ILE A 84 LEU A 86 -1 N LEU A 86 O GLU A 89 SHEET 3 A 8 VAL A 69 TYR A 72 -1 N SER A 71 O ARG A 85 SHEET 4 A 8 ILE A 139 GLU A 143 1 O VAL A 141 N GLY A 70 SHEET 5 A 8 LYS A 41 GLY A 46 1 N ILE A 45 O LEU A 142 SHEET 6 A 8 SER A 161 ILE A 163 1 O THR A 162 N GLY A 46 SHEET 7 A 8 LEU A 195 THR A 197 1 O VAL A 196 N ILE A 163 SHEET 8 A 8 MET A 219 VAL A 221 1 O TYR A 220 N LEU A 195 SHEET 1 B 3 SER A 227 SER A 232 0 SHEET 2 B 3 ASN A 238 CYS A 243 -1 O ARG A 239 N SER A 232 SHEET 3 B 3 THR A 247 LEU A 253 -1 O LEU A 251 N PHE A 240 SHEET 1 C 6 GLU A 297 LYS A 301 0 SHEET 2 C 6 LYS A 304 LEU A 308 -1 O LEU A 308 N GLU A 297 SHEET 3 C 6 ALA A 402 THR A 406 1 O THR A 403 N ILE A 307 SHEET 4 C 6 LEU A 333 ILE A 337 1 N VAL A 336 O VAL A 404 SHEET 5 C 6 ARG A 358 VAL A 361 1 O ILE A 360 N LEU A 335 SHEET 6 C 6 GLU A 387 VAL A 388 1 O GLU A 387 N VAL A 361 CISPEP 1 SER A 74 PRO A 75 0 -2.62 SITE 1 AC1 10 GLY A 47 THR A 48 LYS A 51 GLY A 145 SITE 2 AC1 10 LEU A 146 GLY A 147 LYS A 185 HOH A 727 SITE 3 AC1 10 HOH A 887 HOH A 941 SITE 1 AC2 10 ASN A 49 GLY A 50 LYS A 51 GLY A 52 SITE 2 AC2 10 SER A 53 ASN A 292 ARG A 295 UNL A 701 SITE 3 AC2 10 HOH A 771 HOH A 933 SITE 1 AC3 9 HIS A 312 LEU A 340 LYS A 343 ARG A 368 SITE 2 AC3 9 SER A 408 LEU A 409 PHE A 410 HOH A 720 SITE 3 AC3 9 HOH A 836 SITE 1 AC4 5 ARG A 363 LYS A 370 ASP A 371 MET A 372 SITE 2 AC4 5 ASN A 373 SITE 1 AC5 5 SER A 334 ARG A 358 THR A 399 GLU A 400 SITE 2 AC5 5 ARG A 401 SITE 1 AC6 1 HIS A 76 SITE 1 AC7 9 LYS A 51 SER A 74 GLU A 143 VAL A 144 SITE 2 AC7 9 GLY A 145 SO4 A 502 HOH A 770 HOH A 999 SITE 3 AC7 9 HOH A1021 SITE 1 AC8 5 GLU A 113 LYS A 304 GLU A 397 THR A 399 SITE 2 AC8 5 GLU A 400 CRYST1 84.751 84.751 280.679 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011799 0.006812 0.000000 0.00000 SCALE2 0.000000 0.013625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003563 0.00000