HEADER CARRIER PROTEIN 24-OCT-02 1O78 TITLE BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (1.3S) [10-48] TITLE 2 DELETION MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYL CARRIER PROTEIN OF METHYLMALONYL-COA COMPND 3 CARBOXYL-TRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TRANSCARBOXYLASE, 1.3S SUBUNIT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES 10-48 DELETION MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROPIONIBACTERIUM FREUDENREICHII SUBSP. SOURCE 3 SHERMANII; SOURCE 4 ORGANISM_TAXID: 1752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTAC1.3DELTA10-48, PCY216 KEYWDS CARRIER PROTEIN, TRANSCARBOXYLASE, CARBOXYL CARRIER, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.M.JANK,J.D.SADOWSKY,C.PEIKERT,S.BERGER REVDAT 3 15-MAY-24 1O78 1 REMARK REVDAT 2 24-FEB-09 1O78 1 VERSN REVDAT 1 21-NOV-02 1O78 0 JRNL AUTH M.M.JANK,J.D.SADOWSKY,C.PEIKERT,S.BERGER JRNL TITL NMR STUDIES ON THE SOLUTION STRUCTURE OF A DELETION MUTANT JRNL TITL 2 OF THE TRANSCARBOXYLASE BIOTIN CARRIER SUBUNIT JRNL REF INT.J.BIOL.MACROMOL. V. 30 233 2002 JRNL REFN ISSN 0141-8130 JRNL PMID 12297230 JRNL DOI 10.1016/S0141-8130(02)00033-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.V.REDDY,B.C.SHENOY,P.R.CAREY,F.D.SONNICHSEN REMARK 1 TITL HIGH RESOLUTION SOLUTION STRUCTURE OF THE 1.3S SUBUNIT OF REMARK 1 TITL 2 TRANSCARBOXYLASE FROM PROPIONIBACTERIUM SHERMANII(DAGGER) REMARK 1 REF BIOCHEMISTRY V. 39 2509 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 10704200 REMARK 1 DOI 10.1021/BI9925367 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.M.JANK,S.BOKORNY,K.-H.ROEHM,S.BERGER REMARK 1 TITL EXPRESSION AND BIOTINYLATION OF A MUTANT OF THE REMARK 1 TITL 2 TRANSCARBOXYLASE CARRIER PROTEIN FROM PROPIONI SHERMANII REMARK 1 REF PROTEIN EXPR.PURIF. V. 17 123 1999 REMARK 1 REFN ISSN 1046-5928 REMARK 1 PMID 10497077 REMARK 1 DOI 10.1006/PREP.1999.1097 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DGSA, REFINEMENT WITH NOES AND HYDROGEN REMARK 3 -BOND CONSTRAINTS REMARK 4 REMARK 4 1O78 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1290011596. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 2 MM AMMONIUM ACETATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.3 MM PROTEIN, N15/C13 LABELED REMARK 210 TC 1.3S [10-48], BIOTIN REMARK 210 (UNLABELED) COVALENTLY ATTACHED REMARK 210 TO LYS 89 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-HSQC-NOESY; HNCA; HNCO; REMARK 210 CBCANH; CBCA(CO)NH; HN(CA)CO; REMARK 210 HCACO; HN-HSQC-TOCSY; REMARK 210 HBHA(CBCACO)NH; (H)N(CA)NNH; REMARK 210 HCCH-TOCSY; 2D 15N-1H HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR, PROCHECK / PROCHECK-NMR REMARK 210 3.5.3, AQUA 2.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY/ SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 600 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 3 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN. BIOTIN WAS UNLABELED REMARK 210 AND NOT INCLUDED IN THE STRUCTURE CALCULATION. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 BIOTINYL 1.3S SUBUNIT (CHAIN A) SERVES AS A CARBOXYL CARRIER REMARK 400 BETWEEN THE SUBSTRATE BINDING SITES ON THE 12S AND 5S SUBUNITS. REMARK 400 TRANSCARBOXYLASE IS COMPRISED OF THREE SUBUNITS: 1.3S, REMARK 400 5S, AND 12S. REMARK 400 REMARK 400 RESIDUES 10-48 DELETION MUTANT, CHAIN A REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 6 159.55 59.06 REMARK 500 1 LEU A 22 -49.13 -151.84 REMARK 500 1 LYS A 28 133.81 -174.00 REMARK 500 1 GLU A 33 145.68 59.77 REMARK 500 1 THR A 42 95.69 -52.10 REMARK 500 1 LEU A 44 -160.01 -167.11 REMARK 500 1 GLU A 47 100.14 -161.79 REMARK 500 1 MET A 49 49.57 -149.88 REMARK 500 1 MET A 51 27.32 -152.33 REMARK 500 1 GLU A 52 -81.47 -143.06 REMARK 500 1 THR A 53 -152.44 51.92 REMARK 500 1 GLU A 54 109.77 -54.25 REMARK 500 1 LYS A 65 137.47 179.17 REMARK 500 1 VAL A 74 56.58 36.84 REMARK 500 2 LYS A 4 -178.13 53.81 REMARK 500 2 THR A 6 -70.25 -127.66 REMARK 500 2 ALA A 10 84.10 51.38 REMARK 500 2 ALA A 13 -168.63 -110.71 REMARK 500 2 LEU A 22 59.09 -171.54 REMARK 500 2 ALA A 23 -167.88 49.87 REMARK 500 2 THR A 42 104.59 -59.05 REMARK 500 2 LYS A 65 117.49 178.44 REMARK 500 2 ARG A 71 -45.49 177.83 REMARK 500 2 VAL A 74 164.41 56.44 REMARK 500 2 GLN A 75 111.88 57.44 REMARK 500 2 LEU A 80 -65.90 -135.50 REMARK 500 3 LYS A 2 59.67 -98.33 REMARK 500 3 LEU A 3 -50.45 -162.25 REMARK 500 3 THR A 6 31.20 -159.54 REMARK 500 3 ASN A 8 77.56 54.83 REMARK 500 3 ALA A 10 -55.13 -120.51 REMARK 500 3 LYS A 28 126.71 -172.69 REMARK 500 3 LYS A 32 46.01 -145.35 REMARK 500 3 GLU A 33 155.65 59.82 REMARK 500 3 ALA A 39 109.94 -59.95 REMARK 500 3 THR A 42 94.63 -54.42 REMARK 500 3 GLU A 47 -176.38 52.82 REMARK 500 3 ALA A 48 -62.60 -163.30 REMARK 500 3 MET A 51 117.90 -175.79 REMARK 500 3 GLU A 52 94.99 -53.12 REMARK 500 3 ILE A 55 91.19 -68.85 REMARK 500 3 LYS A 65 89.27 179.24 REMARK 500 4 LYS A 4 -54.33 -132.18 REMARK 500 4 VAL A 5 137.72 61.14 REMARK 500 4 THR A 6 37.36 -99.14 REMARK 500 4 LYS A 12 177.80 54.39 REMARK 500 4 ALA A 13 -168.86 -120.54 REMARK 500 4 ALA A 23 -154.62 49.91 REMARK 500 4 THR A 42 102.73 -55.68 REMARK 500 4 ALA A 48 -157.92 -125.07 REMARK 500 REMARK 500 THIS ENTRY HAS 291 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 71 0.19 SIDE CHAIN REMARK 500 2 ARG A 71 0.31 SIDE CHAIN REMARK 500 3 ARG A 71 0.20 SIDE CHAIN REMARK 500 4 ARG A 71 0.24 SIDE CHAIN REMARK 500 5 ARG A 71 0.25 SIDE CHAIN REMARK 500 6 ARG A 71 0.27 SIDE CHAIN REMARK 500 7 ARG A 71 0.24 SIDE CHAIN REMARK 500 8 ARG A 71 0.31 SIDE CHAIN REMARK 500 9 ARG A 71 0.24 SIDE CHAIN REMARK 500 10 ARG A 71 0.21 SIDE CHAIN REMARK 500 11 ARG A 71 0.21 SIDE CHAIN REMARK 500 12 ARG A 71 0.25 SIDE CHAIN REMARK 500 13 ARG A 71 0.20 SIDE CHAIN REMARK 500 14 ARG A 71 0.30 SIDE CHAIN REMARK 500 15 ARG A 71 0.20 SIDE CHAIN REMARK 500 16 ARG A 71 0.20 SIDE CHAIN REMARK 500 17 ARG A 71 0.21 SIDE CHAIN REMARK 500 18 ARG A 71 0.17 SIDE CHAIN REMARK 500 19 ARG A 71 0.24 SIDE CHAIN REMARK 500 20 ARG A 71 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DCZ RELATED DB: PDB REMARK 900 BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S) REMARK 900 RELATED ID: 1DD2 RELATED DB: PDB REMARK 900 BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S) REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 10-48 DELETION MUTANT DBREF 1O78 A 1 9 UNP P02904 BCCP_PROFR 1 9 DBREF 1O78 A 10 84 UNP P02904 BCCP_PROFR 49 123 SEQRES 1 A 84 MET LYS LEU LYS VAL THR VAL ASN GLY ALA GLY LYS ALA SEQRES 2 A 84 GLY GLU GLY GLU ILE PRO ALA PRO LEU ALA GLY THR VAL SEQRES 3 A 84 SER LYS ILE LEU VAL LYS GLU GLY ASP THR VAL LYS ALA SEQRES 4 A 84 GLY GLN THR VAL LEU VAL LEU GLU ALA MET LYS MET GLU SEQRES 5 A 84 THR GLU ILE ASN ALA PRO THR ASP GLY LYS VAL GLU LYS SEQRES 6 A 84 VAL LEU VAL LYS GLU ARG ASP ALA VAL GLN GLY GLY GLN SEQRES 7 A 84 GLY LEU ILE LYS ILE GLY SHEET 1 AA 3 LYS A 28 ILE A 29 0 SHEET 2 AA 3 THR A 42 VAL A 45 -1 N VAL A 45 O LYS A 28 SHEET 3 AA 3 ILE A 55 ASN A 56 -1 O ILE A 55 N VAL A 43 SHEET 1 AB 3 THR A 36 VAL A 37 0 SHEET 2 AB 3 GLY A 61 VAL A 66 -1 O GLY A 61 N VAL A 37 SHEET 3 AB 3 ILE A 81 ILE A 83 -1 O LYS A 82 N GLU A 64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1