HEADER CELL ADHESION 29-OCT-02 1O7C TITLE SOLUTION STRUCTURE OF THE HUMAN TSG-6 LINK MODULE IN THE PRESENCE OF A TITLE 2 HYALURONAN OCTASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR-INDUCIBLE PROTEIN TSG-6; COMPND 3 CHAIN: T; COMPND 4 FRAGMENT: LINK_MODULE, RESIDUES 36-133; COMPND 5 SYNONYM: HUMAN TSG-6, HYALURONATE-BINDING PROTEIN, TNF-STIMULATED COMPND 6 GENE 6 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRK172; SOURCE 10 OTHER_DETAILS: EXTRACELLULAR, INFLAMMATION-ASSOCIATED KEYWDS HYALURONAN-BINDING DOMAIN, CARBOHYDRATE-BINDING DOMAIN, LINK MODULE, KEYWDS 2 CELL ADHESION, GLYCOPROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.D.BLUNDELL,P.TERIETE,J.D.KAHMANN,A.R.PICKFORD,I.D.CAMPBELL,A.J.DAY REVDAT 5 24-JAN-18 1O7C 1 JRNL REMARK REVDAT 4 14-JUN-17 1O7C 1 REMARK REVDAT 3 24-FEB-09 1O7C 1 VERSN REVDAT 2 04-DEC-03 1O7C 1 JRNL REVDAT 1 23-OCT-03 1O7C 0 JRNL AUTH C.D.BLUNDELL,D.J.MAHONEY,A.ALMOND,P.L.DEANGELIS,J.D.KAHMANN, JRNL AUTH 2 P.TERIETE,A.R.PICKFORD,I.D.CAMPBELL,A.J.DAY JRNL TITL THE LINK MODULE FROM OVULATION- AND INFLAMMATION-ASSOCIATED JRNL TITL 2 PROTEIN TSG-6 CHANGES CONFORMATION ON HYALURONAN BINDING. JRNL REF J. BIOL. CHEM. V. 278 49261 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12972412 JRNL DOI 10.1074/JBC.M309623200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.J.GETTING,D.J.MAHONEY,T.CAO,M.S.RUGG,E.FRIES,C.M.MILNER, REMARK 1 AUTH 2 M.PERRETTI,A.J.DAY REMARK 1 TITL THE LINK MODULE FROM HUMAN TSG-6 INHIBITS NEUTROPHIL REMARK 1 TITL 2 MIGRATION IN A HYALURONAN- AND INTER-ALPHA REMARK 1 TITL 3 -INHIBITOR-INDEPENDENT MANNER REMARK 1 REF J.BIOL.CHEM. V. 277 51068 2002 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12401803 REMARK 1 DOI 10.1074/JBC.M205121200 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.LESLEY,N.M.ENGLISH,I.GAL,K.MIKECZ,A.J.DAY,R.HYMAN REMARK 1 TITL HYALURONAN BINDING PROPERTIES OF A CD44 CHIMERA CONTAINING REMARK 1 TITL 2 THE LINK MODULE OF TSG-6 REMARK 1 REF J.BIOL.CHEM. V. 277 26600 2002 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12011075 REMARK 1 DOI 10.1074/JBC.M201068200 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.J.MAHONEY,C.D.BLUNDELL,A.J.DAY REMARK 1 TITL MAPPING THE HYALURONAN-BINDING SITE ON THE LINK MODULE FROM REMARK 1 TITL 2 HUMAN TUMOR NECROSIS FACTOR-STIMULATED GENE-6 BY REMARK 1 TITL 3 SITE-DIRECTED MUTAGENESIS REMARK 1 REF J.BIOL.CHEM. V. 276 22764 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11287417 REMARK 1 DOI 10.1074/JBC.M100666200 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.J.MAHONEY,R.T.APLIN,A.CALABRO,V.C.HASCALL,A.J.DAY REMARK 1 TITL NOVEL METHODS FOR THE PREPARATION AND CHARACTERIZATION OF REMARK 1 TITL 2 HYALURONAN OLIGOSACCHARIDES OF DEFINED LENGTH REMARK 1 REF GLYCOBIOLOGY V. 11 1025 2001 REMARK 1 REFN ISSN 0959-6658 REMARK 1 PMID 11805075 REMARK 1 DOI 10.1093/GLYCOB/11.12.1025 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.D.KAHMANN,R.O'BRIEN,J.M.WERNER,D.HEINEGARD,J.E.LADBURY, REMARK 1 AUTH 2 I.D.CAMPBELL,A.J.DAY REMARK 1 TITL LOCALIZATION AND CHARACTERIZATION OF THE HYALURONAN-BINDING REMARK 1 TITL 2 SITE ON THE LINK MODULE FROM HUMAN TSG-6 REMARK 1 REF STRUCTURE V. 8 763 2000 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 10903951 REMARK 1 DOI 10.1016/S0969-2126(00)00163-5 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.D.KAHMANN,R.KORUTH,A.J.DAY REMARK 1 TITL METHOD FOR QUANTITATIVE REFOLDING OF THE LINK MODULE FROM REMARK 1 TITL 2 HUMAN TSG-6 REMARK 1 REF PROTEIN EXPR.PURIF. V. 9 315 1997 REMARK 1 REFN ISSN 1046-5928 REMARK 1 PMID 9126602 REMARK 1 DOI 10.1006/PREP.1996.0694 REMARK 1 REFERENCE 7 REMARK 1 AUTH A.J.DAY,R.T.APLIN,A.C.WILLIS REMARK 1 TITL OVEREXPRESSION, PURIFICATION, AND REFOLDING OF LINK MODULE REMARK 1 TITL 2 FROM HUMAN TSG-6 IN ESCHERICHIA COLI: EFFECT OF TEMPERATURE, REMARK 1 TITL 3 MEDIA, AND MUTAGENESIS ON LYSINE MISINCORPORATION AT REMARK 1 TITL 4 ARGININE AGA CODONS REMARK 1 REF PROTEIN EXPR.PURIF. V. 8 1 1996 REMARK 1 REFN ISSN 1046-5928 REMARK 1 PMID 8812829 REMARK 1 DOI 10.1006/PREP.1996.0068 REMARK 1 REFERENCE 8 REMARK 1 AUTH D.KOHDA,C.J.MORTON,A.A.PARKAR,H.HATANAKA,F.M.INAGAKI, REMARK 1 AUTH 2 I.D.CAMPBELL,A.J.DAY REMARK 1 TITL SOLUTION STRUCTURE OF THE LINK MODULE: A HYALURONAN-BINDING REMARK 1 TITL 2 DOMAIN INVOLVED IN EXTRACELLULAR MATRIX STABILITY AND CELL REMARK 1 TITL 3 MIGRATION REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 86 767 1996 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 8797823 REMARK 1 DOI 10.1016/S0092-8674(00)80151-8 REMARK 1 REFERENCE 9 REMARK 1 AUTH T.H.LEE,H.G.WISNIEWSKI,J.VILCEK REMARK 1 TITL A NOVEL SECRETORY TUMOUR NECROSIS FACTOR-INDUCIBLE PROTEIN REMARK 1 TITL 2 (TSG-6) IS A MEMBER OF THE FAMILY OF HYALURONATE BINDING REMARK 1 TITL 3 PROTEINS, CLOSELY RELATED TO THE ADHESION RECEPTOR CD44 REMARK 1 REF J.CELL BIOL. V. 116 545 1992 REMARK 1 REFN ISSN 0021-9525 REMARK 1 PMID 1730767 REMARK 1 DOI 10.1083/JCB.116.2.545 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 1O7C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1290011620. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : ~2MM NA IONS REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10% D2O, 1-3MM (1:1 REMARK 210 LINK_TSG6:OCTASACCHARIDE) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-NOESY-HSQC; 15N-HSQC-NOESY REMARK 210 -HSQC; 13C-NOESY-HSQC; 2D-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2.3, XEASY, CNS REMARK 210 METHOD USED : AB INITIO SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE DETERMINED BY NMR SPECTROSCOPY ON UNIFORMLY 15N- REMARK 210 AND 13C,15N-LABELLED LINK_TSG6 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 POSSIBLE ROLE IN CELL-MATRIX INTERACTIONS DURING INFLAMMATION REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU T 6 -168.97 -115.88 REMARK 500 1 LYS T 13 1.10 -154.50 REMARK 500 1 TYR T 16 -38.68 -35.34 REMARK 500 1 GLU T 26 53.75 -100.51 REMARK 500 1 CYS T 47 80.68 -66.27 REMARK 500 1 ALA T 48 136.33 177.66 REMARK 500 1 ALA T 53 -165.39 51.00 REMARK 500 1 PRO T 64 105.41 -48.73 REMARK 500 1 CYS T 68 -83.57 -70.54 REMARK 500 1 ASN T 83 75.67 -168.55 REMARK 500 1 TRP T 88 -153.46 -151.87 REMARK 500 1 ALA T 97 58.24 37.07 REMARK 500 2 LYS T 13 5.77 -152.76 REMARK 500 2 GLU T 26 63.96 -115.62 REMARK 500 2 CYS T 47 74.97 -64.82 REMARK 500 2 ALA T 48 119.56 -175.77 REMARK 500 2 ALA T 49 114.54 -37.42 REMARK 500 2 ALA T 53 -165.79 50.22 REMARK 500 2 PRO T 66 -86.33 -71.02 REMARK 500 2 ASN T 83 77.32 -151.74 REMARK 500 2 GLU T 86 -173.88 -66.36 REMARK 500 2 ALA T 97 64.66 33.59 REMARK 500 3 GLU T 6 -168.43 -112.52 REMARK 500 3 LYS T 13 8.53 -155.12 REMARK 500 3 TYR T 16 -39.96 -33.93 REMARK 500 3 THR T 32 -158.57 -111.21 REMARK 500 3 TYR T 33 -74.19 -79.89 REMARK 500 3 CYS T 47 80.75 -66.83 REMARK 500 3 ALA T 48 126.29 175.99 REMARK 500 3 TRP T 51 168.43 -48.68 REMARK 500 3 LYS T 54 -31.64 76.84 REMARK 500 3 PRO T 60 -88.02 -60.33 REMARK 500 3 ILE T 61 108.75 71.42 REMARK 500 3 VAL T 62 -70.74 -60.45 REMARK 500 3 PRO T 66 -78.44 -68.83 REMARK 500 3 PHE T 70 95.75 58.44 REMARK 500 3 LYS T 72 -165.37 41.26 REMARK 500 3 ALA T 97 68.28 31.45 REMARK 500 4 GLU T 26 59.00 -105.92 REMARK 500 4 THR T 32 -164.94 -111.84 REMARK 500 4 TYR T 33 -70.75 -74.76 REMARK 500 4 ALA T 48 138.47 -175.26 REMARK 500 4 TRP T 51 152.06 -47.12 REMARK 500 4 ALA T 53 -166.29 53.44 REMARK 500 4 LYS T 54 0.34 -65.84 REMARK 500 4 PRO T 66 -78.81 -68.31 REMARK 500 4 CYS T 68 -82.36 -59.81 REMARK 500 4 ILE T 76 84.78 -62.42 REMARK 500 4 ASN T 83 61.95 -165.81 REMARK 500 4 ARG T 84 -3.39 -58.30 REMARK 500 REMARK 500 THIS ENTRY HAS 269 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TSG RELATED DB: PDB REMARK 900 NMR STUDY OF THE LINK MODULE FROM TSG-6 MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1O7B RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HUMAN TSG-6 LINK MODULE REMARK 900 RELATED ID: 6393 RELATED DB: BMRB DBREF 1O7C T 1 98 UNP P98066 TSG6_HUMAN 36 133 SEQRES 1 T 98 GLY VAL TYR HIS ARG GLU ALA ARG SER GLY LYS TYR LYS SEQRES 2 T 98 LEU THR TYR ALA GLU ALA LYS ALA VAL CYS GLU PHE GLU SEQRES 3 T 98 GLY GLY HIS LEU ALA THR TYR LYS GLN LEU GLU ALA ALA SEQRES 4 T 98 ARG LYS ILE GLY PHE HIS VAL CYS ALA ALA GLY TRP MET SEQRES 5 T 98 ALA LYS GLY ARG VAL GLY TYR PRO ILE VAL LYS PRO GLY SEQRES 6 T 98 PRO ASN CYS GLY PHE GLY LYS THR GLY ILE ILE ASP TYR SEQRES 7 T 98 GLY ILE ARG LEU ASN ARG SER GLU ARG TRP ASP ALA TYR SEQRES 8 T 98 CYS TYR ASN PRO HIS ALA LYS HELIX 1 1 TYR T 16 PHE T 25 1 10 HELIX 2 2 TYR T 33 ILE T 42 1 10 SHEET 1 TA 3 VAL T 2 ARG T 5 0 SHEET 2 TA 3 ASP T 89 TYR T 93 -1 O ALA T 90 N ARG T 5 SHEET 3 TA 3 HIS T 29 ALA T 31 -1 O HIS T 29 N TYR T 93 SHEET 1 TB 4 VAL T 2 ARG T 5 0 SHEET 2 TB 4 ASP T 89 TYR T 93 -1 O ALA T 90 N ARG T 5 SHEET 3 TB 4 ALA T 49 MET T 52 1 O TRP T 51 N TYR T 91 SHEET 1 TC 5 ARG T 56 ILE T 61 0 SHEET 2 TC 5 GLY T 74 ASP T 77 -1 O GLY T 74 N ILE T 61 SSBOND 1 CYS T 23 CYS T 92 1555 1555 2.03 SSBOND 2 CYS T 47 CYS T 68 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1