HEADER HYDROLASE 02-NOV-02 1O7E TITLE CRYSTAL STRUCTURE OF THE CLASS A BETA-LACTAMSE L2 FROM TITLE 2 STENOTROPHOMONAS MALTOPHILIA AT 1.51 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: L2 BETA LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_TAXID: 40324; SOURCE 4 STRAIN: 405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET29-(A+) KEYWDS HYDROLASE, BETA-LACTAMASE, CLASS A, L2 EXPDTA X-RAY DIFFRACTION AUTHOR L.PERNOT,S.PETRELLA,W.SOUGAKOFF REVDAT 3 13-DEC-23 1O7E 1 REMARK REVDAT 2 24-FEB-09 1O7E 1 VERSN REVDAT 1 26-FEB-04 1O7E 0 JRNL AUTH S.PETRELLA,L.PERNOT,D.LASCOUX,E.FOREST,V.JARLIER,W.SOUGAKOFF JRNL TITL ROLE OF THE DISULFIDE BRIDGE CYS69-CYS238 IN CLASS A JRNL TITL 2 B-LACTAMASES : A STRUCTURAL AND BIOCHEMICAL INVESTIGATION ON JRNL TITL 3 THE B-LACTAMASE L2 FROM STENOTROPHOMONAS MALTOPHILIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 131390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5238 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 733 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1290011280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.948 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 131717 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 23.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: THE STARTING MODEL USED WAS THE ONE OF L2 AT 1.85 REMARK 200 ANGSTROM, PDB ENTRY 1N4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 1.5M, SODIUM REMARK 280 CACODYLATE 0.1M PH 6.5, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.93050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 66.60800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.60800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.46525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.60800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 66.60800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.39575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.60800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.60800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.46525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 66.60800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.60800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.39575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.93050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 ALA A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 ASN A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 ALA B 14 REMARK 465 GLY B 15 REMARK 465 LYS B 16 REMARK 465 ALA B 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2015 O HOH B 2377 1.63 REMARK 500 O HOH A 2095 O HOH A 2213 1.78 REMARK 500 NH1 ARG B 86 O HOH B 2129 1.84 REMARK 500 O HOH B 2263 O HOH B 2265 1.92 REMARK 500 O HOH B 2279 O HOH B 2377 1.98 REMARK 500 O SER A 104 O HOH A 2140 2.01 REMARK 500 NH1 ARG A 65 O HOH A 2077 2.04 REMARK 500 NZ LYS B 38 O HOH B 2034 2.04 REMARK 500 O HOH B 2109 O HOH B 2116 2.06 REMARK 500 O HOH A 2119 O HOH B 2148 2.07 REMARK 500 O HOH B 2210 O HOH B 2371 2.09 REMARK 500 O HOH B 2282 O HOH B 2283 2.11 REMARK 500 O HOH A 2101 O HOH A 2102 2.14 REMARK 500 O HOH A 2203 O HOH A 2330 2.16 REMARK 500 OE2 GLU B 99 O HOH B 2161 2.16 REMARK 500 O HOH B 2112 O HOH B 2226 2.18 REMARK 500 O HOH B 2040 O HOH B 2348 2.18 REMARK 500 O HOH B 2087 O HOH B 2179 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2014 O HOH A 2061 7555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 168 CD GLU B 168 OE1 -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 116 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 124 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -143.46 48.95 REMARK 500 HIS A 105 77.45 66.37 REMARK 500 LYS A 115 -152.46 -133.97 REMARK 500 ASP A 163 -31.17 -134.33 REMARK 500 CYS A 220 -130.14 -101.92 REMARK 500 GLU A 241 -89.29 -102.69 REMARK 500 ASP A 242 11.05 -140.92 REMARK 500 ALA A 267 85.34 -157.97 REMARK 500 ILE A 290 -72.14 -87.00 REMARK 500 CYS B 69 -141.11 49.82 REMARK 500 ALA B 106 56.87 -149.70 REMARK 500 LYS B 115 -156.93 -132.50 REMARK 500 ASP B 131 108.12 -52.85 REMARK 500 CYS B 220 -128.87 -100.90 REMARK 500 GLU B 241 -100.43 -97.97 REMARK 500 ALA B 267 85.36 -156.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2047 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2084 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B2053 DISTANCE = 6.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1293 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE L2 MATURE PROTEIN STARTS AT RESIDUE 28 REMARK 999 THERE ARE NO RESIDUES NUMBERED 58 AND 239 DBREF 1O7E A 14 291 UNP Q9RBQ1 Q9RBQ1 28 303 DBREF 1O7E B 14 291 UNP Q9RBQ1 Q9RBQ1 28 303 SEQRES 1 A 276 ALA GLY LYS ALA THR ALA ASN ALA PRO THR ASP ALA ALA SEQRES 2 A 276 ILE THR ALA ALA SER ASP PHE ALA ALA LEU GLU LYS ALA SEQRES 3 A 276 CYS ALA GLY ARG LEU GLY VAL THR LEU LEU ASP THR ALA SEQRES 4 A 276 SER GLY ARG ARG ILE GLY HIS ARG GLN ASP GLU ARG PHE SEQRES 5 A 276 PRO MET CYS SER THR PHE LYS SER MET LEU ALA ALA THR SEQRES 6 A 276 VAL LEU SER GLN ALA GLU ARG MET PRO ALA LEU LEU ASP SEQRES 7 A 276 ARG ARG VAL PRO VAL GLY GLU ALA ASP LEU LEU SER HIS SEQRES 8 A 276 ALA PRO VAL THR ARG ARG HIS ALA GLY LYS ASP MET THR SEQRES 9 A 276 VAL ARG ASP LEU CYS ARG ALA THR ILE ILE THR SER ASP SEQRES 10 A 276 ASN THR ALA ALA ASN LEU LEU PHE GLY VAL VAL GLY GLY SEQRES 11 A 276 PRO PRO ALA VAL THR ALA PHE LEU ARG ALA SER GLY ASP SEQRES 12 A 276 THR VAL SER ARG SER ASP ARG LEU GLU PRO GLU LEU ASN SEQRES 13 A 276 SER PHE ALA LYS GLY ASP PRO ARG ASP THR THR THR PRO SEQRES 14 A 276 ALA ALA MET ALA ALA THR LEU GLN ARG VAL VAL LEU GLY SEQRES 15 A 276 GLU VAL LEU GLN PRO ALA SER ARG GLN GLN LEU ALA ASP SEQRES 16 A 276 TRP LEU ILE ASP ASN GLU THR GLY ASP ALA CYS LEU ARG SEQRES 17 A 276 ALA GLY LEU GLY LYS ARG TRP ARG VAL GLY ASP LYS THR SEQRES 18 A 276 GLY SER ASN GLY GLU ASP ALA ARG ASN ASP ILE ALA VAL SEQRES 19 A 276 LEU TRP PRO VAL ALA GLY GLY ALA PRO TRP VAL LEU THR SEQRES 20 A 276 ALA TYR LEU GLN ALA GLY ALA ILE SER TYR GLU GLN ARG SEQRES 21 A 276 ALA SER VAL LEU ALA GLN VAL GLY ARG ILE ALA ASP ARG SEQRES 22 A 276 LEU ILE GLY SEQRES 1 B 276 ALA GLY LYS ALA THR ALA ASN ALA PRO THR ASP ALA ALA SEQRES 2 B 276 ILE THR ALA ALA SER ASP PHE ALA ALA LEU GLU LYS ALA SEQRES 3 B 276 CYS ALA GLY ARG LEU GLY VAL THR LEU LEU ASP THR ALA SEQRES 4 B 276 SER GLY ARG ARG ILE GLY HIS ARG GLN ASP GLU ARG PHE SEQRES 5 B 276 PRO MET CYS SER THR PHE LYS SER MET LEU ALA ALA THR SEQRES 6 B 276 VAL LEU SER GLN ALA GLU ARG MET PRO ALA LEU LEU ASP SEQRES 7 B 276 ARG ARG VAL PRO VAL GLY GLU ALA ASP LEU LEU SER HIS SEQRES 8 B 276 ALA PRO VAL THR ARG ARG HIS ALA GLY LYS ASP MET THR SEQRES 9 B 276 VAL ARG ASP LEU CYS ARG ALA THR ILE ILE THR SER ASP SEQRES 10 B 276 ASN THR ALA ALA ASN LEU LEU PHE GLY VAL VAL GLY GLY SEQRES 11 B 276 PRO PRO ALA VAL THR ALA PHE LEU ARG ALA SER GLY ASP SEQRES 12 B 276 THR VAL SER ARG SER ASP ARG LEU GLU PRO GLU LEU ASN SEQRES 13 B 276 SER PHE ALA LYS GLY ASP PRO ARG ASP THR THR THR PRO SEQRES 14 B 276 ALA ALA MET ALA ALA THR LEU GLN ARG VAL VAL LEU GLY SEQRES 15 B 276 GLU VAL LEU GLN PRO ALA SER ARG GLN GLN LEU ALA ASP SEQRES 16 B 276 TRP LEU ILE ASP ASN GLU THR GLY ASP ALA CYS LEU ARG SEQRES 17 B 276 ALA GLY LEU GLY LYS ARG TRP ARG VAL GLY ASP LYS THR SEQRES 18 B 276 GLY SER ASN GLY GLU ASP ALA ARG ASN ASP ILE ALA VAL SEQRES 19 B 276 LEU TRP PRO VAL ALA GLY GLY ALA PRO TRP VAL LEU THR SEQRES 20 B 276 ALA TYR LEU GLN ALA GLY ALA ILE SER TYR GLU GLN ARG SEQRES 21 B 276 ALA SER VAL LEU ALA GLN VAL GLY ARG ILE ALA ASP ARG SEQRES 22 B 276 LEU ILE GLY HET GOL A1292 6 HET SO4 A1293 5 HET SO4 A1294 5 HET SO4 A1295 5 HET SO4 A1296 5 HET SO4 A1297 5 HET SO4 A1298 5 HET SO4 A1299 5 HET GOL B1292 6 HET GOL B1293 6 HET SO4 B1294 5 HET SO4 B1295 5 HET SO4 B1296 5 HET SO4 B1297 5 HET SO4 B1298 5 HET SO4 B1299 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 SO4 13(O4 S 2-) FORMUL 19 HOH *733(H2 O) HELIX 1 1 THR A 23 ALA A 30 1 8 HELIX 2 2 ASP A 32 ALA A 41 1 10 HELIX 3 3 CYS A 69 THR A 71 5 3 HELIX 4 4 PHE A 72 GLU A 85 1 14 HELIX 5 5 GLY A 98 LEU A 102 5 5 HELIX 6 6 VAL A 108 ALA A 113 5 6 HELIX 7 7 VAL A 119 THR A 129 1 11 HELIX 8 8 ASP A 131 GLY A 143 1 13 HELIX 9 9 GLY A 143 GLY A 156 1 14 HELIX 10 10 PRO A 167 SER A 171 5 5 HELIX 11 11 THR A 182 LEU A 195 1 14 HELIX 12 12 GLN A 200 ASP A 213 1 14 HELIX 13 13 CYS A 220 LEU A 225 1 6 HELIX 14 14 SER A 271 GLY A 291 1 21 HELIX 15 15 THR B 23 ALA B 30 1 8 HELIX 16 16 ASP B 32 CYS B 40 1 9 HELIX 17 17 CYS B 69 THR B 71 5 3 HELIX 18 18 PHE B 72 GLU B 85 1 14 HELIX 19 19 MET B 87 ASP B 92 5 6 HELIX 20 20 GLY B 98 LEU B 102 5 5 HELIX 21 21 VAL B 108 ALA B 113 5 6 HELIX 22 22 VAL B 119 THR B 129 1 11 HELIX 23 23 ASP B 131 GLY B 143 1 13 HELIX 24 24 GLY B 144 GLY B 156 1 13 HELIX 25 25 PRO B 167 SER B 171 5 5 HELIX 26 26 THR B 182 LEU B 195 1 14 HELIX 27 27 GLN B 200 ASP B 213 1 14 HELIX 28 28 CYS B 220 LEU B 225 1 6 HELIX 29 29 SER B 271 GLY B 291 1 21 SHEET 1 AA 5 ARG A 56 HIS A 60 0 SHEET 2 AA 5 ARG A 43 ASP A 50 -1 O VAL A 46 N HIS A 60 SHEET 3 AA 5 TRP A 259 GLN A 266 -1 O VAL A 260 N LEU A 49 SHEET 4 AA 5 ALA A 243 PRO A 252 -1 O ARG A 244 N LEU A 265 SHEET 5 AA 5 TRP A 229 SER A 237 -1 O ARG A 230 N TRP A 251 SHEET 1 AB 2 PHE A 66 PRO A 67 0 SHEET 2 AB 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AC 2 ARG A 94 VAL A 97 0 SHEET 2 AC 2 LYS A 115 THR A 118 -1 O LYS A 115 N VAL A 97 SHEET 1 BA 5 ARG B 56 HIS B 60 0 SHEET 2 BA 5 ARG B 43 ASP B 50 -1 O VAL B 46 N HIS B 60 SHEET 3 BA 5 TRP B 259 GLN B 266 -1 O VAL B 260 N LEU B 49 SHEET 4 BA 5 ALA B 243 PRO B 252 -1 O ARG B 244 N LEU B 265 SHEET 5 BA 5 TRP B 229 SER B 237 -1 O ARG B 230 N TRP B 251 SHEET 1 BB 2 PHE B 66 PRO B 67 0 SHEET 2 BB 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 BC 2 ARG B 94 PRO B 96 0 SHEET 2 BC 2 ASP B 116 THR B 118 -1 O MET B 117 N VAL B 95 CISPEP 1 GLU A 166 PRO A 167 0 1.36 CISPEP 2 GLU B 166 PRO B 167 0 -2.54 SITE 1 AC1 10 SER A 70 SER A 130 LYS A 234 THR A 235 SITE 2 AC1 10 GLY A 236 SER A 237 HOH A2079 HOH A2327 SITE 3 AC1 10 HOH A2328 HOH A2329 SITE 1 AC2 4 ARG A 178 HOH A2203 HOH A2331 HOH A2332 SITE 1 AC3 7 LYS A 38 ARG A 61 HOH A2023 HOH A2072 SITE 2 AC3 7 HOH A2333 HOH A2334 HOH A2335 SITE 1 AC4 5 LYS A 38 LYS A 174 HOH A2336 HOH A2337 SITE 2 AC4 5 HOH A2338 SITE 1 AC5 9 ARG A 65 LYS A 174 GLY A 175 HOH A2078 SITE 2 AC5 9 HOH A2337 HOH A2339 HOH A2340 HOH A2341 SITE 3 AC5 9 HOH A2342 SITE 1 AC6 4 ARG A 153 HOH A2343 MET B 87 ARG B 93 SITE 1 AC7 4 ARG A 204 GLN A 205 HOH A2344 HOH A2345 SITE 1 AC8 12 SER B 70 SER B 130 LYS B 234 THR B 235 SITE 2 AC8 12 GLY B 236 SER B 237 HOH B2321 HOH B2372 SITE 3 AC8 12 HOH B2373 HOH B2374 HOH B2375 HOH B2376 SITE 1 AC9 4 THR B 23 ASP B 24 HOH B2378 HOH B2379 SITE 1 BC1 3 ARG B 61 HOH B2381 HOH B2382 SITE 1 BC2 7 GLY B 59 HIS B 60 ARG B 61 GLN B 62 SITE 2 BC2 7 HOH B2090 HOH B2383 HOH B2384 SITE 1 BC3 2 ARG B 178 HOH B2236 SITE 1 BC4 8 ARG B 65 LYS B 174 GLY B 175 HOH B2104 SITE 2 BC4 8 HOH B2385 HOH B2386 HOH B2387 HOH B2388 SITE 1 BC5 8 ARG A 93 GLY A 140 VAL A 141 HOH A2326 SITE 2 BC5 8 SER B 82 ARG B 86 ALA B 154 GOL B1292 SITE 1 BC6 6 ARG A 93 GOL A1292 ALA B 154 SER B 155 SITE 2 BC6 6 VAL B 198 HOH B2370 SITE 1 BC7 7 ASN B 170 SER B 171 ASN B 238 GLY B 240 SITE 2 BC7 7 GLU B 241 HOH B2327 HOH B2371 CRYST1 133.216 133.216 93.861 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007507 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010654 0.00000 MTRIX1 1 -0.885043 -0.448562 0.124462 202.34840 1 MTRIX2 1 -0.452213 0.765016 -0.458535 77.06300 1 MTRIX3 1 0.110466 -0.462107 -0.879917 97.73650 1