data_1O84 # _entry.id 1O84 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1O84 PDBE EBI-11763 WWPDB D_1290011763 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1E68 unspecified 'SOLUTION STRUCTURE OF BACTERIOCIN AS-48' PDB 1O82 unspecified 'X-RAY STRUCTURE OF BACTERIOCIN AS-48 AT PH 4.5. SULPHATE BOUND FORM' PDB 1O83 unspecified 'CRYSTAL STRUCTURE OF BACTERIOCIN AS-48 AT PH 7.5, PHOSPHATE BOUND. CRYSTAL FORM I' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1O84 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2002-11-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sanchez-Barrena, M.J.' 1 ? 'Martinez-Ripoll, M.' 2 ? 'Galvez, A.' 3 ? 'Valdivia, E.' 4 ? 'Maqueda, M.' 5 ? 'Cruz, V.' 6 ? 'Albert, A.' 7 ? # _citation.id primary _citation.title 'Structure of Bacteriocin as-48: From Soluble State to Membrane Bound State' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 334 _citation.page_first 541 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14623193 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2003.09.060 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sanchez-Barrena, M.J.' 1 ? primary 'Martinez-Ripoll, M.' 2 ? primary 'Galvez, A.' 3 ? primary 'Valdivia, E.' 4 ? primary 'Maqueda, M.' 5 ? primary 'Cruz, V.' 6 ? primary 'Albert, A.' 7 ? # _cell.entry_id 1O84 _cell.length_a 76.488 _cell.length_b 76.488 _cell.length_c 51.517 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O84 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PEPTIDE ANTIBIOTIC AS-48' 7177.538 2 ? ? ? 'CYCLIC PROTEIN, LINK BETWEEN M1 AND W70' 2 branched man 'alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 5 non-polymer syn DECANE 142.282 1 ? ? ? ? 6 water nat water 18.015 25 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'BATERIOCIN AS-48' 2 alpha-maltose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MAKEFGIPAAVAGTVLNVVEAGGWVTTIVSILTAVGSGGLSLLAAAGRESIKAYLKKEIKKKGKRAVIAW _entity_poly.pdbx_seq_one_letter_code_can MAKEFGIPAAVAGTVLNVVEAGGWVTTIVSILTAVGSGGLSLLAAAGRESIKAYLKKEIKKKGKRAVIAW _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 GLU n 1 5 PHE n 1 6 GLY n 1 7 ILE n 1 8 PRO n 1 9 ALA n 1 10 ALA n 1 11 VAL n 1 12 ALA n 1 13 GLY n 1 14 THR n 1 15 VAL n 1 16 LEU n 1 17 ASN n 1 18 VAL n 1 19 VAL n 1 20 GLU n 1 21 ALA n 1 22 GLY n 1 23 GLY n 1 24 TRP n 1 25 VAL n 1 26 THR n 1 27 THR n 1 28 ILE n 1 29 VAL n 1 30 SER n 1 31 ILE n 1 32 LEU n 1 33 THR n 1 34 ALA n 1 35 VAL n 1 36 GLY n 1 37 SER n 1 38 GLY n 1 39 GLY n 1 40 LEU n 1 41 SER n 1 42 LEU n 1 43 LEU n 1 44 ALA n 1 45 ALA n 1 46 ALA n 1 47 GLY n 1 48 ARG n 1 49 GLU n 1 50 SER n 1 51 ILE n 1 52 LYS n 1 53 ALA n 1 54 TYR n 1 55 LEU n 1 56 LYS n 1 57 LYS n 1 58 GLU n 1 59 ILE n 1 60 LYS n 1 61 LYS n 1 62 LYS n 1 63 GLY n 1 64 LYS n 1 65 ARG n 1 66 ALA n 1 67 VAL n 1 68 ILE n 1 69 ALA n 1 70 TRP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'STREPTOCOCCUS LIQUEFACIENS' _entity_src_nat.pdbx_organism_scientific 'ENTEROCOCCUS FAECALIS' _entity_src_nat.pdbx_ncbi_taxonomy_id 1351 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q47765 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q47765 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1O84 A 1 ? 70 ? Q47765 36 ? 105 ? 1 70 2 1 1O84 B 1 ? 70 ? Q47765 36 ? 105 ? 1 70 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 D10 non-polymer . DECANE ? 'C10 H22' 142.282 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1O84 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;CRYSTALS WERE GROWN USING VAPOUR DIFFUSION TECHNIQUES FROM DROPS CONTAINING AS48 (20 MG/ML), 18 MM N-DECYL-BETA-D-MALTOSIDE AND RESERVOIR SOLUTION (0.2 M AMMONIUM SULPHATE,25 % W/V POLYETHYLENE GLYCOL 4000) IN A RATIO 4:1:5, pH 7.50 ; # _diffrn.id 1 _diffrn.ambient_temp 120.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF NONIUS' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1O84 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.300 _reflns.d_resolution_high 2.700 _reflns.number_obs 4544 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.13800 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.1000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.100 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.59000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.300 _reflns_shell.pdbx_redundancy 9.00 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1O84 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3777 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.8 _refine.ls_percent_reflns_obs 100 _refine.ls_R_factor_obs 0.23669 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23576 _refine.ls_R_factor_R_free 0.25607 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 185 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 44.965 _refine.aniso_B[1][1] -3.56 _refine.aniso_B[2][2] -3.56 _refine.aniso_B[3][3] 7.12 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'NCS RESTRAINTS USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.393 _refine.overall_SU_ML 0.313 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 15.606 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1008 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 1097 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 10.0 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.645500 _struct_ncs_oper.matrix[1][2] 0.123700 _struct_ncs_oper.matrix[1][3] 0.753700 _struct_ncs_oper.matrix[2][1] 0.013800 _struct_ncs_oper.matrix[2][2] -0.984700 _struct_ncs_oper.matrix[2][3] 0.173500 _struct_ncs_oper.matrix[3][1] 0.763700 _struct_ncs_oper.matrix[3][2] 0.122400 _struct_ncs_oper.matrix[3][3] 0.633900 _struct_ncs_oper.vector[1] 26.47330 _struct_ncs_oper.vector[2] 42.38510 _struct_ncs_oper.vector[3] -17.93800 # _struct.entry_id 1O84 _struct.title 'Crystal Structure of Bacteriocin AS-48. N-decyl-beta-D-maltoside Bound.' _struct.pdbx_descriptor 'PEPTIDE ANTIBIOTIC AS-48' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1O84 _struct_keywords.pdbx_keywords 'PEPTIDE ANTIBIOTIC' _struct_keywords.text ;PEPTIDE ANTIBIOTIC, BACTERIOCIN, ANTIBACTERIAL PEPTIDE, MEMBRANE PERMEABILIZATION, PROTEIN CRYSTALLOGRAPHY, CYCLIC POLYPEPTIDE, PROTEIN MEMBRANE INTERACTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 6 ? L N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 1 ? GLY A 6 ? MET A 1 GLY A 6 1 ? 6 HELX_P HELX_P2 2 PRO A 8 ? ALA A 21 ? PRO A 8 ALA A 21 1 ? 14 HELX_P HELX_P3 3 TRP A 24 ? VAL A 35 ? TRP A 24 VAL A 35 1 ? 12 HELX_P HELX_P4 4 GLY A 36 ? GLY A 47 ? GLY A 36 GLY A 47 1 ? 12 HELX_P HELX_P5 5 SER A 50 ? TRP A 70 ? SER A 50 TRP A 70 1 ? 21 HELX_P HELX_P6 6 MET B 1 ? GLY B 6 ? MET B 1 GLY B 6 1 ? 6 HELX_P HELX_P7 7 PRO B 8 ? ALA B 21 ? PRO B 8 ALA B 21 1 ? 14 HELX_P HELX_P8 8 TRP B 24 ? VAL B 35 ? TRP B 24 VAL B 35 1 ? 12 HELX_P HELX_P9 9 GLY B 36 ? ALA B 46 ? GLY B 36 ALA B 46 1 ? 11 HELX_P HELX_P10 10 SER B 50 ? TRP B 70 ? SER B 50 TRP B 70 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? F D10 . C1 ? ? ? 1_555 C GLC . O1 ? ? A D10 1074 C GLC 1 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale2 covale both ? C GLC . O4 ? ? ? 1_555 C GLC . C1 ? ? C GLC 1 C GLC 2 1_555 ? ? ? ? ? ? ? 1.447 sing ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1O84 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1O84 _atom_sites.fract_transf_matrix[1][1] 0.013074 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013074 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019410 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'GLC C 1 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 TRP 70 70 70 TRP TRP A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 GLU 4 4 4 GLU GLU B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 ILE 7 7 7 ILE ILE B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 ALA 9 9 9 ALA ALA B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 ALA 12 12 12 ALA ALA B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 THR 14 14 14 THR THR B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 ASN 17 17 17 ASN ASN B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 GLU 20 20 20 GLU GLU B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 TRP 24 24 24 TRP TRP B . n B 1 25 VAL 25 25 25 VAL VAL B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 THR 27 27 27 THR THR B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 VAL 29 29 29 VAL VAL B . n B 1 30 SER 30 30 30 SER SER B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 ALA 34 34 34 ALA ALA B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 GLY 39 39 39 GLY GLY B . n B 1 40 LEU 40 40 40 LEU LEU B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 LEU 42 42 42 LEU LEU B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 ALA 44 44 44 ALA ALA B . n B 1 45 ALA 45 45 45 ALA ALA B . n B 1 46 ALA 46 46 46 ALA ALA B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 ARG 48 48 48 ARG ARG B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 ILE 51 51 51 ILE ILE B . n B 1 52 LYS 52 52 52 LYS LYS B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 TYR 54 54 54 TYR TYR B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 LYS 56 56 56 LYS LYS B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 GLU 58 58 58 GLU GLU B . n B 1 59 ILE 59 59 59 ILE ILE B . n B 1 60 LYS 60 60 60 LYS LYS B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 LYS 62 62 62 LYS LYS B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 LYS 64 64 64 LYS LYS B . n B 1 65 ARG 65 65 65 ARG ARG B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 ILE 68 68 68 ILE ILE B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 TRP 70 70 70 TRP TRP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 GOL 1 1071 1071 GOL GOL A . E 4 SO4 1 1072 1072 SO4 SO4 A . F 5 D10 1 1074 1074 D10 D10 A . G 4 SO4 1 1071 1071 SO4 SO4 B . H 4 SO4 1 1072 1072 SO4 SO4 B . I 4 SO4 1 1073 1073 SO4 SO4 B . J 4 SO4 1 1074 1074 SO4 SO4 B . K 6 HOH 1 2001 2001 HOH HOH A . K 6 HOH 2 2002 2002 HOH HOH A . K 6 HOH 3 2003 2003 HOH HOH A . K 6 HOH 4 2004 2004 HOH HOH A . K 6 HOH 5 2005 2005 HOH HOH A . K 6 HOH 6 2006 2006 HOH HOH A . K 6 HOH 7 2007 2007 HOH HOH A . K 6 HOH 8 2008 2008 HOH HOH A . K 6 HOH 9 2009 2009 HOH HOH A . K 6 HOH 10 2010 2010 HOH HOH A . L 6 HOH 1 2001 2001 HOH HOH B . L 6 HOH 2 2002 2002 HOH HOH B . L 6 HOH 3 2003 2003 HOH HOH B . L 6 HOH 4 2004 2004 HOH HOH B . L 6 HOH 5 2005 2005 HOH HOH B . L 6 HOH 6 2006 2006 HOH HOH B . L 6 HOH 7 2007 2007 HOH HOH B . L 6 HOH 8 2008 2008 HOH HOH B . L 6 HOH 9 2009 2009 HOH HOH B . L 6 HOH 10 2010 2010 HOH HOH B . L 6 HOH 11 2011 2011 HOH HOH B . L 6 HOH 12 2012 2012 HOH HOH B . L 6 HOH 13 2013 2013 HOH HOH B . L 6 HOH 14 2014 2014 HOH HOH B . L 6 HOH 15 2015 2015 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900001 _pdbx_molecule_features.name alpha-maltose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900001 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id SO4 _pdbx_struct_special_symmetry.auth_seq_id 1072 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id SO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-11-20 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-05-30 5 'Structure model' 1 4 2019-10-16 6 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Experimental preparation' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Atomic model' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Non-polymer description' 14 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' struct 2 5 'Structure model' exptl_crystal_grow 3 5 'Structure model' pdbx_database_status 4 5 'Structure model' struct_conn 5 6 'Structure model' atom_site 6 6 'Structure model' chem_comp 7 6 'Structure model' database_PDB_caveat 8 6 'Structure model' entity 9 6 'Structure model' entity_name_com 10 6 'Structure model' pdbx_branch_scheme 11 6 'Structure model' pdbx_chem_comp_identifier 12 6 'Structure model' pdbx_entity_branch 13 6 'Structure model' pdbx_entity_branch_descriptor 14 6 'Structure model' pdbx_entity_branch_link 15 6 'Structure model' pdbx_entity_branch_list 16 6 'Structure model' pdbx_entity_nonpoly 17 6 'Structure model' pdbx_molecule_features 18 6 'Structure model' pdbx_nonpoly_scheme 19 6 'Structure model' pdbx_validate_chiral 20 6 'Structure model' struct_asym 21 6 'Structure model' struct_conn 22 6 'Structure model' struct_site 23 6 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_struct.title' 2 5 'Structure model' '_exptl_crystal_grow.method' 3 5 'Structure model' '_pdbx_database_status.status_code_sf' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 6 'Structure model' '_atom_site.B_iso_or_equiv' 6 6 'Structure model' '_atom_site.Cartn_x' 7 6 'Structure model' '_atom_site.Cartn_y' 8 6 'Structure model' '_atom_site.Cartn_z' 9 6 'Structure model' '_atom_site.auth_asym_id' 10 6 'Structure model' '_atom_site.auth_atom_id' 11 6 'Structure model' '_atom_site.auth_comp_id' 12 6 'Structure model' '_atom_site.auth_seq_id' 13 6 'Structure model' '_atom_site.label_asym_id' 14 6 'Structure model' '_atom_site.label_atom_id' 15 6 'Structure model' '_atom_site.label_comp_id' 16 6 'Structure model' '_atom_site.label_entity_id' 17 6 'Structure model' '_atom_site.type_symbol' 18 6 'Structure model' '_chem_comp.formula' 19 6 'Structure model' '_chem_comp.formula_weight' 20 6 'Structure model' '_chem_comp.id' 21 6 'Structure model' '_chem_comp.mon_nstd_flag' 22 6 'Structure model' '_chem_comp.name' 23 6 'Structure model' '_chem_comp.pdbx_synonyms' 24 6 'Structure model' '_chem_comp.type' 25 6 'Structure model' '_entity.formula_weight' 26 6 'Structure model' '_entity.pdbx_description' 27 6 'Structure model' '_entity.pdbx_number_of_molecules' 28 6 'Structure model' '_entity.src_method' 29 6 'Structure model' '_entity.type' 30 6 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 31 6 'Structure model' '_pdbx_validate_chiral.auth_atom_id' 32 6 'Structure model' '_pdbx_validate_chiral.auth_comp_id' 33 6 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 34 6 'Structure model' '_struct_asym.entity_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement . ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? AMoRE phasing . ? 4 ? ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N B MET 1 ? ? C B TRP 70 ? ? 1.34 2 1 N A MET 1 ? ? C A TRP 70 ? ? 1.34 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD B GLU 58 ? ? OE1 B GLU 58 ? ? 1.150 1.252 -0.102 0.011 N 2 1 CD B GLU 58 ? ? OE2 B GLU 58 ? ? 1.179 1.252 -0.073 0.011 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 OE1 _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 GLU _pdbx_validate_rmsd_angle.auth_seq_id_1 58 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CD _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 GLU _pdbx_validate_rmsd_angle.auth_seq_id_2 58 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OE2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 GLU _pdbx_validate_rmsd_angle.auth_seq_id_3 58 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 114.77 _pdbx_validate_rmsd_angle.angle_target_value 123.30 _pdbx_validate_rmsd_angle.angle_deviation -8.53 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 64 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -20.76 _pdbx_validate_torsion.psi -66.78 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id C _pdbx_validate_chiral.auth_comp_id GLC _pdbx_validate_chiral.auth_seq_id 1 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 GLC 1 C GLC 1 A MAL 1073 n C 2 GLC 2 C GLC 2 A MAL 1073 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpa1-4DGlcpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Glcp]{[(4+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 GLC 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 'SULFATE ION' SO4 5 DECANE D10 6 water HOH #