HEADER MOLYBDENUM COFACTOR BIOSYNTHESIS 28-NOV-02 1O8O TITLE THE ACTIVE SITE OF THE MOLYBDENUM COFACTOR BIOSYNTHETIC PROTEIN DOMAIN TITLE 2 CNX1G COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS CNX1 PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: CNX1 G-DOMAIN, RESIDUES 462-623; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: CV. COLUMBIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RK5206; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE60 KEYWDS MOLYBDENUM COFACTOR BIOSYNTHESIS, CNX1G, MUTANTS EXPDTA X-RAY DIFFRACTION AUTHOR J.KUPER,J.WINKING,H.J.HECHT,G.SCHWARZ,R.R.MENDEL REVDAT 3 13-DEC-23 1O8O 1 REMARK REVDAT 2 24-FEB-09 1O8O 1 VERSN REVDAT 1 04-DEC-03 1O8O 0 JRNL AUTH J.KUPER,J.WINKING,H.J.HECHT,R.R.MENDEL,G.SCHWARZ JRNL TITL THE ACTIVE SITE OF THE MOLYBDENUM COFACTOR BIOSYNTHETIC JRNL TITL 2 PROTEIN DOMAIN CNX1G JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 411 36 2003 JRNL REFN ISSN 0003-9861 JRNL PMID 12590921 JRNL DOI 10.1016/S0003-9861(02)00714-2 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 949 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1273 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.4680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.605 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3642 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3511 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4936 ; 1.374 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8204 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 5.031 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3987 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 611 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 727 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3887 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2121 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.342 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2418 ; 0.764 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3913 ; 1.519 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1224 ; 2.115 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 4.060 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 28 4 REMARK 3 1 B 3 B 28 4 REMARK 3 1 C 3 C 28 4 REMARK 3 2 A 30 A 44 4 REMARK 3 2 B 30 B 44 4 REMARK 3 2 C 30 C 44 4 REMARK 3 3 A 46 A 162 4 REMARK 3 3 B 46 B 162 4 REMARK 3 3 C 46 C 162 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2298 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 2298 ; 0.17 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 2298 ; 0.22 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2298 ; 0.38 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 2298 ; 0.43 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 2298 ; 0.38 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1O8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1290011753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : OSMIX MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 26.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.11200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1EAV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE, PH 6.5, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.13150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 61.13150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.31150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.13150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.65575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.13150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.96725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.13150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.96725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.13150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.65575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 61.13150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 61.13150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.31150 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.13150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.13150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 87.31150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.13150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 130.96725 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.13150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 43.65575 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.13150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 43.65575 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.13150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 130.96725 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.13150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.13150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 87.31150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE MOLECULE CNX1G IS INVOLVED IN MOLYBDENUM COFACTOR REMARK 400 BIOSYNTHESIS REMARK 400 REMARK 400 ENGINEERED MUTATION IN CHAIN A, THR 542 ASP REMARK 400 ENGINEERED MUTATION IN CHAIN B, THR 542 ASP REMARK 400 ENGINEERED MUTATION IN CHAIN C, THR 542 ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 165 REMARK 465 LYS A 166 REMARK 465 ARG A 167 REMARK 465 VAL B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 167 REMARK 465 VAL C 1 REMARK 465 PRO C 2 REMARK 465 ASP C 165 REMARK 465 LYS C 166 REMARK 465 ARG C 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 164 CA C O REMARK 470 LYS B 166 CA C O CB CG CD CE REMARK 470 LYS B 166 NZ REMARK 470 GLY C 164 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 70 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 LYS A 163 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP B 70 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP C 24 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP C 73 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 119.19 -174.39 REMARK 500 VAL A 69 -61.62 -108.58 REMARK 500 SER B 14 119.74 -175.88 REMARK 500 SER C 14 117.63 176.26 REMARK 500 ASP C 87 105.37 -55.33 REMARK 500 SER C 124 133.10 -38.51 REMARK 500 LYS C 163 -66.29 -91.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EAV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF HUMAN GEPHYRIN AND PLANT CNX1 G DOMAINS - REMARK 900 COMPARATIVE ANALYSIS AND FUNCTIONAL IMPLICATIONS REMARK 900 RELATED ID: 1O8N RELATED DB: PDB REMARK 900 THE ACTIVE SITE OF THE MOLYBDENUM COFACTOR BIOSYNTHETIC PROTEIN REMARK 900 DOMAIN CNX1G REMARK 900 RELATED ID: 1O8Q RELATED DB: PDB REMARK 900 THE ACTIVE SITE OF THE MOLYBDENUM COFACTOR BIOSYNTHETIC PROTEIN REMARK 900 DOMAIN CNX1G REMARK 999 REMARK 999 SEQUENCE REMARK 999 DOMAIN DEFINITION MODIFIED FROM SWALL:CNX1_ARATH_2 REMARK 999 N-TERMIANL EXTENSION VPGP, REMARK 999 C-TERMINAL EXTENSION KQIKGDK DBREF 1O8O A 1 167 UNP Q39054 CNX1_ARATH 462 628 DBREF 1O8O B 1 167 UNP Q39054 CNX1_ARATH 462 628 DBREF 1O8O C 1 167 UNP Q39054 CNX1_ARATH 462 628 SEQADV 1O8O ASP A 81 UNP Q39054 THR 542 ENGINEERED MUTATION SEQADV 1O8O ASP B 81 UNP Q39054 THR 542 ENGINEERED MUTATION SEQADV 1O8O ASP C 81 UNP Q39054 THR 542 ENGINEERED MUTATION SEQRES 1 A 167 VAL PRO GLY PRO GLU TYR LYS VAL ALA ILE LEU THR VAL SEQRES 2 A 167 SER ASP THR VAL SER ALA GLY ALA GLY PRO ASP ARG SER SEQRES 3 A 167 GLY PRO ARG ALA VAL SER VAL VAL ASP SER SER SER GLU SEQRES 4 A 167 LYS LEU GLY GLY ALA LYS VAL VAL ALA THR ALA VAL VAL SEQRES 5 A 167 PRO ASP GLU VAL GLU ARG ILE LYS ASP ILE LEU GLN LYS SEQRES 6 A 167 TRP SER ASP VAL ASP GLU MET ASP LEU ILE LEU THR LEU SEQRES 7 A 167 GLY GLY ASP GLY PHE THR PRO ARG ASP VAL THR PRO GLU SEQRES 8 A 167 ALA THR LYS LYS VAL ILE GLU ARG GLU THR PRO GLY LEU SEQRES 9 A 167 LEU PHE VAL MET MET GLN GLU SER LEU LYS ILE THR PRO SEQRES 10 A 167 PHE ALA MET LEU SER ARG SER ALA ALA GLY ILE ARG GLY SEQRES 11 A 167 SER THR LEU ILE ILE ASN MET PRO GLY ASN PRO ASN ALA SEQRES 12 A 167 VAL ALA GLU CYS MET GLU ALA LEU LEU PRO ALA LEU LYS SEQRES 13 A 167 HIS ALA LEU LYS GLN ILE LYS GLY ASP LYS ARG SEQRES 1 B 167 VAL PRO GLY PRO GLU TYR LYS VAL ALA ILE LEU THR VAL SEQRES 2 B 167 SER ASP THR VAL SER ALA GLY ALA GLY PRO ASP ARG SER SEQRES 3 B 167 GLY PRO ARG ALA VAL SER VAL VAL ASP SER SER SER GLU SEQRES 4 B 167 LYS LEU GLY GLY ALA LYS VAL VAL ALA THR ALA VAL VAL SEQRES 5 B 167 PRO ASP GLU VAL GLU ARG ILE LYS ASP ILE LEU GLN LYS SEQRES 6 B 167 TRP SER ASP VAL ASP GLU MET ASP LEU ILE LEU THR LEU SEQRES 7 B 167 GLY GLY ASP GLY PHE THR PRO ARG ASP VAL THR PRO GLU SEQRES 8 B 167 ALA THR LYS LYS VAL ILE GLU ARG GLU THR PRO GLY LEU SEQRES 9 B 167 LEU PHE VAL MET MET GLN GLU SER LEU LYS ILE THR PRO SEQRES 10 B 167 PHE ALA MET LEU SER ARG SER ALA ALA GLY ILE ARG GLY SEQRES 11 B 167 SER THR LEU ILE ILE ASN MET PRO GLY ASN PRO ASN ALA SEQRES 12 B 167 VAL ALA GLU CYS MET GLU ALA LEU LEU PRO ALA LEU LYS SEQRES 13 B 167 HIS ALA LEU LYS GLN ILE LYS GLY ASP LYS ARG SEQRES 1 C 167 VAL PRO GLY PRO GLU TYR LYS VAL ALA ILE LEU THR VAL SEQRES 2 C 167 SER ASP THR VAL SER ALA GLY ALA GLY PRO ASP ARG SER SEQRES 3 C 167 GLY PRO ARG ALA VAL SER VAL VAL ASP SER SER SER GLU SEQRES 4 C 167 LYS LEU GLY GLY ALA LYS VAL VAL ALA THR ALA VAL VAL SEQRES 5 C 167 PRO ASP GLU VAL GLU ARG ILE LYS ASP ILE LEU GLN LYS SEQRES 6 C 167 TRP SER ASP VAL ASP GLU MET ASP LEU ILE LEU THR LEU SEQRES 7 C 167 GLY GLY ASP GLY PHE THR PRO ARG ASP VAL THR PRO GLU SEQRES 8 C 167 ALA THR LYS LYS VAL ILE GLU ARG GLU THR PRO GLY LEU SEQRES 9 C 167 LEU PHE VAL MET MET GLN GLU SER LEU LYS ILE THR PRO SEQRES 10 C 167 PHE ALA MET LEU SER ARG SER ALA ALA GLY ILE ARG GLY SEQRES 11 C 167 SER THR LEU ILE ILE ASN MET PRO GLY ASN PRO ASN ALA SEQRES 12 C 167 VAL ALA GLU CYS MET GLU ALA LEU LEU PRO ALA LEU LYS SEQRES 13 C 167 HIS ALA LEU LYS GLN ILE LYS GLY ASP LYS ARG FORMUL 4 HOH *64(H2 O) HELIX 1 1 SER A 14 ALA A 19 1 6 HELIX 2 2 ARG A 25 SER A 37 1 13 HELIX 3 3 GLU A 55 VAL A 69 1 15 HELIX 4 4 VAL A 88 ILE A 97 1 10 HELIX 5 5 THR A 101 THR A 116 1 16 HELIX 6 6 PRO A 117 SER A 122 5 6 HELIX 7 7 ASN A 140 LYS A 163 1 24 HELIX 8 8 SER B 14 ALA B 19 1 6 HELIX 9 9 SER B 26 SER B 37 1 12 HELIX 10 10 GLU B 55 VAL B 69 1 15 HELIX 11 11 VAL B 88 ILE B 97 1 10 HELIX 12 12 THR B 101 THR B 116 1 16 HELIX 13 13 PRO B 117 SER B 122 5 6 HELIX 14 14 ASN B 140 GLY B 164 1 25 HELIX 15 15 SER C 14 GLY C 20 1 7 HELIX 16 16 ARG C 25 SER C 37 1 13 HELIX 17 17 GLU C 55 VAL C 69 1 15 HELIX 18 18 VAL C 88 ILE C 97 1 10 HELIX 19 19 THR C 101 THR C 116 1 16 HELIX 20 20 PRO C 117 SER C 122 5 6 HELIX 21 21 ASN C 140 LYS C 163 1 24 SHEET 1 AA 6 ALA A 44 VAL A 52 0 SHEET 2 AA 6 TYR A 6 VAL A 13 1 O TYR A 6 N LYS A 45 SHEET 3 AA 6 LEU A 74 LEU A 78 1 O LEU A 74 N ALA A 9 SHEET 4 AA 6 THR A 132 MET A 137 1 O LEU A 133 N ILE A 75 SHEET 5 AA 6 ALA A 126 ARG A 129 -1 O GLY A 127 N ILE A 134 SHEET 6 AA 6 ARG A 99 GLU A 100 -1 O ARG A 99 N ILE A 128 SHEET 1 BA 6 ALA B 44 VAL B 52 0 SHEET 2 BA 6 TYR B 6 VAL B 13 1 O TYR B 6 N LYS B 45 SHEET 3 BA 6 LEU B 74 LEU B 78 1 O LEU B 74 N ALA B 9 SHEET 4 BA 6 THR B 132 MET B 137 1 O LEU B 133 N ILE B 75 SHEET 5 BA 6 ALA B 126 ARG B 129 -1 O GLY B 127 N ILE B 134 SHEET 6 BA 6 ARG B 99 GLU B 100 -1 O ARG B 99 N ILE B 128 SHEET 1 CA 6 ALA C 44 VAL C 52 0 SHEET 2 CA 6 TYR C 6 VAL C 13 1 O TYR C 6 N LYS C 45 SHEET 3 CA 6 LEU C 74 LEU C 78 1 O LEU C 74 N ALA C 9 SHEET 4 CA 6 THR C 132 MET C 137 1 O LEU C 133 N ILE C 75 SHEET 5 CA 6 ALA C 126 ARG C 129 -1 O GLY C 127 N ILE C 134 SHEET 6 CA 6 ARG C 99 GLU C 100 -1 O ARG C 99 N ILE C 128 CRYST1 122.263 122.263 174.623 90.00 90.00 90.00 I 41 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005727 0.00000 MTRIX1 1 0.493328 0.629186 0.600626 53.27780 1 MTRIX2 1 -0.360438 -0.480565 0.799463 45.00210 1 MTRIX3 1 0.791651 -0.610886 -0.010294 -84.73540 1 MTRIX1 2 0.496046 -0.378655 0.781382 -3.58560 1 MTRIX2 2 0.619827 -0.475789 -0.624051 110.01090 1 MTRIX3 2 0.608073 0.793880 -0.001313 -14.28040 1