HEADER ELECTRON TRANSFER 11-DEC-02 1O97 TITLE STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN FROM TITLE 2 METHYLOPHILUS METHYLOTROPHUS, RECOGNITION LOOP REMOVED BY TITLE 3 LIMITED PROTEOLYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: BETA-ETF, ELECTRON TRANSFER FLAVOPROTEIN SMALL COMPND 5 SUBUNIT, ETFSS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT; COMPND 9 CHAIN: D; COMPND 10 SYNONYM: ALPHA-ETF, ELECTRON TRANSFER FLAVOPROTEIN LARGE COMPND 11 SUBUNIT, ETFLS; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 3 ORGANISM_TAXID: 17; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 8 ORGANISM_TAXID: 17; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELECTRON TRANSFER, FLAVOPROTEIN, FAD BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS,J.BASRAN,F.TALFOURNIER,M.J.SUTCLIFFE,N.S.SCRUTTON REVDAT 3 24-FEB-09 1O97 1 VERSN REVDAT 2 27-MAY-05 1O97 1 JRNL REVDAT 1 06-FEB-03 1O97 0 JRNL AUTH D.LEYS,J.BASRAN,F.TALFOURNIER,M.J.SUTCLIFFE, JRNL AUTH 2 N.S.SCRUTTON JRNL TITL EXTENSIVE CONFORMATIONAL SAMPLING IN A TERNARY JRNL TITL 2 ELECTRON TRANSFER COMPLEX. JRNL REF NAT.STRUCT.BIOL. V. 10 219 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12567183 JRNL DOI 10.1038/NSB894 REMARK 2 REMARK 2 RESOLUTION. 1.6 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.08 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 81223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 311 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 656 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.914 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4331 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5896 ; 1.837 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 562 ; 6.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;37.378 ;25.174 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 691 ;15.077 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.432 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 699 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3216 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2087 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 494 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.612 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.331 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2806 ; 1.078 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4504 ; 1.922 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 2.986 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1392 ; 4.855 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGIONS AND SIDECHAINS REMARK 3 WERE NOT INCLUDED IN THE MODEL. REMARK 4 REMARK 4 1O97 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-DEC-02. REMARK 100 THE PDBE ID CODE IS EBI-11871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M POTASSIUM PHOSPHATE PH 6.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.40533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.81067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.60800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.01333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.20267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU C 194 REMARK 465 ARG C 195 REMARK 465 GLY C 196 REMARK 465 ILE C 197 REMARK 465 LYS C 198 REMARK 465 GLN C 199 REMARK 465 ALA C 200 REMARK 465 ALA C 201 REMARK 465 THR C 202 REMARK 465 LYS C 203 REMARK 465 LYS C 262 REMARK 465 GLY C 263 REMARK 465 ALA C 264 REMARK 465 GLY D 193 REMARK 465 GLY D 194 REMARK 465 ASN D 195 REMARK 465 ALA D 319 REMARK 465 ALA D 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 15 CG CD OE1 OE2 REMARK 470 GLU C 21 CG CD OE1 OE2 REMARK 470 MET C 24 CG SD CE REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 SER C 52 OG REMARK 470 ASP C 54 CG OD1 OD2 REMARK 470 LYS C 152 CG CD CE NZ REMARK 470 LYS C 157 CD CE NZ REMARK 470 ARG C 190 CG CD NE CZ NH1 NH2 REMARK 470 SER C 193 CB OG REMARK 470 PRO C 204 CG CD REMARK 470 SER C 227 OG REMARK 470 GLU C 236 CG CD OE1 OE2 REMARK 470 LYS C 237 CE NZ REMARK 470 SER C 248 OG REMARK 470 ILE C 255 CG1 CG2 CD1 REMARK 470 ASN C 259 CG OD1 ND2 REMARK 470 GLU C 260 CG CD OE1 OE2 REMARK 470 GLU D 33 CG CD OE1 OE2 REMARK 470 LYS D 35 CD CE NZ REMARK 470 LYS D 64 CG CD CE NZ REMARK 470 LYS D 109 CD CE NZ REMARK 470 LYS D 161 CG CD CE NZ REMARK 470 GLU D 164 CG CD OE1 OE2 REMARK 470 ALA D 166 CB REMARK 470 GLN D 180 CG CD OE1 NE2 REMARK 470 ASP D 196 CG OD1 OD2 REMARK 470 ILE D 197 CG1 CG2 CD1 REMARK 470 GLU D 227 CG CD OE1 OE2 REMARK 470 LYS D 246 CE NZ REMARK 470 LYS D 261 CG CD CE NZ REMARK 470 LYS D 315 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA ARG C 190 - O HOH C 2221 1.93 REMARK 500 CB ARG C 190 - O HOH C 2221 2.05 REMARK 500 CB ARG C 190 - O HOH C 2225 2.06 REMARK 500 CB TYR C 191 - O HOH C 2227 1.85 REMARK 500 CD1 TYR C 191 - O HOH C 2111 1.60 REMARK 500 OH TYR C 191 - O HOH C 2228 1.37 REMARK 500 NZ LYS C 253 - O HOH C 2283 2.07 REMARK 500 CB ASN C 259 - O HOH C 2284 2.13 REMARK 500 O VAL D 179 - O HOH D 2252 2.04 REMARK 500 CA GLY D 192 - O HOH D 2273 1.95 REMARK 500 O ALA D 228 - O HOH D 2300 1.97 REMARK 500 O HOH D 2243 - O HOH D 2245 2.08 REMARK 500 O HOH D 2281 - O HOH D 2368 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 CE2 TYR C 191 O HOH D 2145 4764 1.29 REMARK 500 OG SER D 80 O HOH C 2228 4765 2.06 REMARK 500 CB ASP D 196 O HOH C 2285 6655 1.99 REMARK 500 O HOH C 2228 OG SER D 80 4764 2.06 REMARK 500 O HOH C 2285 CB ASP D 196 5564 1.99 REMARK 500 O HOH D 2145 CE2 TYR C 191 4765 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER C 225 CB SER C 225 OG 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 27 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 39 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 40 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 82 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP C 89 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ILE C 98 CG1 - CB - CG2 ANGL. DEV. = -16.5 DEGREES REMARK 500 SER C 225 CB - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 ASP D 58 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP D 71 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 20 155.59 -45.88 REMARK 500 VAL C 145 52.49 75.15 REMARK 500 TYR D 102 -18.28 -148.06 REMARK 500 LYS D 186 -141.01 -116.88 REMARK 500 THR D 200 21.89 -74.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL D 49 19.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D1319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E11 RELATED DB: PDB REMARK 900 MODEL STRUCTURE OF ELECTRON TRANSFERRING REMARK 900 FLAVOPROTEIN FROM METHYLOPHILUS METHYLOTROPUS REMARK 900 (CA COORDINATES) REMARK 900 RELATED ID: 1O94 RELATED DB: PDB REMARK 900 TERNARY COMPLEX BETWEEN TRIMETHYLAMINE REMARK 900 DEHYDROGENASE AND ELECTRON TRANSFERRING REMARK 900 FLAVOPROTEIN REMARK 900 RELATED ID: 1O95 RELATED DB: PDB REMARK 900 TERNARY COMPLEX BETWEEN TRIMETHYLAMINE DEHYDROGENASE AND REMARK 900 ELECTRON TRANSFERRING FLAVOPROTEIN REMARK 900 RELATED ID: 1O96 RELATED DB: PDB REMARK 900 STRUCTURE OF ELECTRON TRANSFERRING FLAVOPROTEIN REMARK 900 FOR METHYLOPHILUS METHYLOTROPHUS. DBREF 1O97 C 1 264 UNP P53570 ETFB_METME 1 264 DBREF 1O97 D 1 320 UNP P53571 ETFA_METME 1 320 SEQRES 1 C 264 MET LYS ILE LEU VAL ALA VAL LYS GLN THR ALA ALA LEU SEQRES 2 C 264 GLU GLU ASP PHE GLU ILE ARG GLU ASP GLY MET ASP VAL SEQRES 3 C 264 ASP GLU ASP PHE MET MET TYR ASP LEU ASN GLU TRP ASP SEQRES 4 C 264 ASP PHE SER LEU GLU GLU ALA MET LYS ILE LYS GLU SER SEQRES 5 C 264 SER ASP THR ASP VAL GLU VAL VAL VAL VAL SER VAL GLY SEQRES 6 C 264 PRO ASP ARG VAL ASP GLU SER LEU ARG LYS CYS LEU ALA SEQRES 7 C 264 LYS GLY ALA ASP ARG ALA VAL ARG VAL TRP ASP ASP ALA SEQRES 8 C 264 ALA GLU GLY SER ASP ALA ILE VAL VAL GLY ARG ILE LEU SEQRES 9 C 264 THR GLU VAL ILE LYS LYS GLU ALA PRO ASP MET VAL PHE SEQRES 10 C 264 ALA GLY VAL GLN SER SER ASP GLN ALA TYR ALA SER THR SEQRES 11 C 264 GLY ILE SER VAL ALA SER TYR LEU ASN TRP PRO HIS ALA SEQRES 12 C 264 ALA VAL VAL ALA ASP LEU GLN TYR LYS PRO GLY ASP ASN SEQRES 13 C 264 LYS ALA VAL ILE ARG ARG GLU LEU GLU GLY GLY MET LEU SEQRES 14 C 264 GLN GLU VAL GLU ILE ASN CYS PRO ALA VAL LEU THR ILE SEQRES 15 C 264 GLN LEU GLY ILE ASN LYS PRO ARG TYR ALA SER LEU ARG SEQRES 16 C 264 GLY ILE LYS GLN ALA ALA THR LYS PRO ILE GLU GLU VAL SEQRES 17 C 264 SER LEU ALA ASP ILE GLY LEU SER ALA ASN ASP VAL GLY SEQRES 18 C 264 ALA ALA GLN SER MET SER ARG VAL ARG ARG MET TYR ILE SEQRES 19 C 264 PRO GLU LYS GLY ARG ALA THR MET ILE GLU GLY THR ILE SEQRES 20 C 264 SER GLU GLN ALA ALA LYS ILE ILE GLN ILE ILE ASN GLU SEQRES 21 C 264 PHE LYS GLY ALA SEQRES 1 D 320 SER LYS ILE LEU VAL ILE ALA GLU HIS ARG ARG ASN ASP SEQRES 2 D 320 LEU ARG PRO VAL SER LEU GLU LEU ILE GLY ALA ALA ASN SEQRES 3 D 320 GLY LEU LYS LYS SER GLY GLU ASP LYS VAL VAL VAL ALA SEQRES 4 D 320 VAL ILE GLY SER GLN ALA ASP ALA PHE VAL PRO ALA LEU SEQRES 5 D 320 SER VAL ASN GLY VAL ASP GLU LEU VAL VAL VAL LYS GLY SEQRES 6 D 320 SER SER ILE ASP PHE ASP PRO ASP VAL PHE GLU ALA SER SEQRES 7 D 320 VAL SER ALA LEU ILE ALA ALA HIS ASN PRO SER VAL VAL SEQRES 8 D 320 LEU LEU PRO HIS SER VAL ASP SER LEU GLY TYR ALA SER SEQRES 9 D 320 SER LEU ALA SER LYS THR GLY TYR GLY PHE ALA THR ASP SEQRES 10 D 320 VAL TYR ILE VAL GLU TYR GLN GLY ASP GLU LEU VAL ALA SEQRES 11 D 320 THR ARG GLY GLY TYR ASN GLN LYS VAL ASN VAL GLU VAL SEQRES 12 D 320 ASP PHE PRO GLY LYS SER THR VAL VAL LEU THR ILE ARG SEQRES 13 D 320 PRO SER VAL PHE LYS PRO LEU GLU GLY ALA GLY SER PRO SEQRES 14 D 320 VAL VAL SER ASN VAL ASP ALA PRO SER VAL GLN SER ARG SEQRES 15 D 320 SER GLN ASN LYS ASP TYR VAL GLU VAL GLY GLY GLY ASN SEQRES 16 D 320 ASP ILE ASP ILE THR THR VAL ASP PHE ILE MET SER ILE SEQRES 17 D 320 GLY ARG GLY ILE GLY GLU GLU THR ASN VAL GLU GLN PHE SEQRES 18 D 320 ARG GLU LEU ALA ASP GLU ALA GLY ALA THR LEU CYS CYS SEQRES 19 D 320 SER ARG PRO ILE ALA ASP ALA GLY TRP LEU PRO LYS SER SEQRES 20 D 320 ARG GLN VAL GLY GLN SER GLY LYS VAL VAL GLY SER CYS SEQRES 21 D 320 LYS LEU TYR VAL ALA MET GLY ILE SER GLY SER ILE GLN SEQRES 22 D 320 HIS MET ALA GLY MET LYS HIS VAL PRO THR ILE ILE ALA SEQRES 23 D 320 VAL ASN THR ASP PRO GLY ALA SER ILE PHE THR ILE ALA SEQRES 24 D 320 LYS TYR GLY ILE VAL ALA ASP ILE PHE ASP ILE GLU GLU SEQRES 25 D 320 GLU LEU LYS ALA GLN LEU ALA ALA HET AMP C1262 23 HET FAD D1319 53 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 HOH *656(H2 O1) HELIX 1 1 ASP C 27 ASP C 29 5 3 HELIX 2 2 ASN C 36 SER C 53 1 18 HELIX 3 3 PRO C 66 ARG C 68 5 3 HELIX 4 4 VAL C 69 LYS C 79 1 11 HELIX 5 5 ASP C 89 GLU C 93 5 5 HELIX 6 6 ASP C 96 ALA C 112 1 17 HELIX 7 7 SER C 129 ASN C 139 1 11 HELIX 8 8 GLU C 165 GLY C 167 5 3 HELIX 9 9 LEU C 210 GLY C 214 5 5 HELIX 10 10 SER C 216 VAL C 220 5 5 HELIX 11 11 GLY C 221 SER C 225 5 5 HELIX 12 12 THR C 246 PHE C 261 1 16 HELIX 13 13 PRO D 16 LYS D 29 1 14 HELIX 14 14 GLN D 44 ALA D 47 5 4 HELIX 15 15 PHE D 48 SER D 53 1 6 HELIX 16 16 ASP D 71 ASN D 87 1 17 HELIX 17 17 SER D 96 GLY D 101 1 6 HELIX 18 18 TYR D 102 LYS D 109 1 8 HELIX 19 19 ARG D 210 GLY D 213 5 4 HELIX 20 20 GLU D 214 THR D 216 5 3 HELIX 21 21 ASN D 217 GLY D 229 1 13 HELIX 22 22 SER D 235 ALA D 241 1 7 HELIX 23 23 PRO D 245 ARG D 248 5 4 HELIX 24 24 SER D 271 LYS D 279 1 9 HELIX 25 25 ALA D 293 ILE D 298 5 6 HELIX 26 26 ASP D 306 LEU D 318 1 13 SHEET 1 CA10 GLU C 206 VAL C 208 0 SHEET 2 CA10 ARG C 83 VAL C 87 1 O ALA C 84 N GLU C 206 SHEET 3 CA10 GLU C 58 VAL C 64 1 O VAL C 61 N VAL C 85 SHEET 4 CA10 LYS C 2 ALA C 6 1 O ILE C 3 N VAL C 60 SHEET 5 CA10 MET C 115 GLY C 119 1 O MET C 115 N LEU C 4 SHEET 6 CA10 VAL C 179 ILE C 182 1 O LEU C 180 N ALA C 118 SHEET 7 CA10 HIS C 142 GLN C 150 1 O ALA C 143 N THR C 181 SHEET 8 CA10 LYS C 157 GLU C 163 -1 O VAL C 159 N GLN C 150 SHEET 9 CA10 LEU C 169 ASN C 175 -1 O GLN C 170 N ARG C 162 SHEET 10 CA10 SER D 183 VAL D 189 -1 O GLN D 184 N GLU C 173 SHEET 1 CB 2 GLN C 9 LEU C 13 0 SHEET 2 CB 2 MET C 31 LEU C 35 -1 O MET C 32 N ALA C 12 SHEET 1 CC 4 ARG C 228 TYR C 233 0 SHEET 2 CC 4 VAL D 139 ASP D 144 -1 O ASN D 140 N TYR C 233 SHEET 3 CC 4 GLU D 127 GLY D 134 -1 O ALA D 130 N VAL D 143 SHEET 4 CC 4 ILE D 120 GLN D 124 -1 O ILE D 120 N THR D 131 SHEET 1 CD 6 THR C 241 MET C 242 0 SHEET 2 CD 6 TYR D 301 ILE D 303 1 N GLY D 302 O THR C 241 SHEET 3 CD 6 THR D 283 VAL D 287 1 O ILE D 284 N TYR D 301 SHEET 4 CD 6 LEU D 262 MET D 266 1 O TYR D 263 N ILE D 285 SHEET 5 CD 6 PHE D 204 ILE D 208 1 O ILE D 205 N VAL D 264 SHEET 6 CD 6 THR D 231 CYS D 234 1 O THR D 231 N MET D 206 SHEET 1 DA 7 GLY D 113 VAL D 118 0 SHEET 2 DA 7 VAL D 151 ILE D 155 1 O VAL D 152 N ALA D 115 SHEET 3 DA 7 VAL D 90 PRO D 94 1 O VAL D 91 N LEU D 153 SHEET 4 DA 7 LYS D 2 ILE D 6 1 O LEU D 4 N LEU D 92 SHEET 5 DA 7 LYS D 35 ILE D 41 1 O LYS D 35 N ILE D 3 SHEET 6 DA 7 GLU D 59 LYS D 64 1 O GLU D 59 N VAL D 38 SHEET 7 DA 7 VAL D 170 ASP D 175 1 O VAL D 170 N LEU D 60 SHEET 1 DB 2 HIS D 9 ARG D 10 0 SHEET 2 DB 2 ASP D 13 LEU D 14 -1 O ASP D 13 N ARG D 10 CISPEP 1 CYS C 176 PRO C 177 0 1.01 SITE 1 AC1 18 ALA C 6 VAL C 7 LYS C 8 ASN C 36 SITE 2 AC1 18 ASP C 39 VAL C 62 SER C 63 VAL C 64 SITE 3 AC1 18 ALA C 118 GLY C 119 GLN C 121 SER C 122 SITE 4 AC1 18 TYR C 127 ALA C 128 SER C 129 THR C 130 SITE 5 AC1 18 HOH C2166 HOH C2287 SITE 1 AC2 36 TRP C 38 GLN C 121 GLN C 183 HOH C2049 SITE 2 AC2 36 HOH C2050 GLY D 209 ARG D 210 GLY D 211 SITE 3 AC2 36 SER D 235 ARG D 236 PRO D 237 GLN D 249 SITE 4 AC2 36 VAL D 250 GLY D 251 GLN D 252 SER D 253 SITE 5 AC2 36 GLY D 254 GLY D 267 ILE D 268 SER D 269 SITE 6 AC2 36 SER D 271 GLN D 273 HIS D 274 ASN D 288 SITE 7 AC2 36 THR D 289 ASP D 290 ALA D 305 ASP D 306 SITE 8 AC2 36 ILE D 307 HOH D2338 HOH D2364 HOH D2365 SITE 9 AC2 36 HOH D2366 HOH D2367 HOH D2368 HOH D2369 CRYST1 118.248 118.248 85.216 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008457 0.004882 0.000000 0.00000 SCALE2 0.000000 0.009765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011735 0.00000