HEADER ISOMERASE 11-DEC-02 1O98 TITLE 1.4A CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE MUTASE FROM BACILLUS TITLE 2 STEAROTHERMOPHILUS COMPLEXED WITH 2-PHOSPHOGLYCERATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE COMPND 3 MUTASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PHOSPHOGLYCERATE MUTASE; COMPND 6 EC: 5.4.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGM\:PUSH2 KEYWDS ISOMERASE, ALPHA/BETA-TYPE STRUCTURE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.RIGDEN,E.LAMANI,J.E.LITTLEJOHN,M.J.JEDRZEJAS REVDAT 3 13-DEC-23 1O98 1 REMARK LINK REVDAT 2 24-FEB-09 1O98 1 VERSN REVDAT 1 01-MAY-03 1O98 0 JRNL AUTH D.J.RIGDEN,L.V.MELLO,E.LAMANI,J.E.LITTLEJOHN,M.J.JEDRZEJAS JRNL TITL INSIGHTS INTO THE CATALYTIC MECHANISM OF JRNL TITL 2 COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE FROM X-RAY JRNL TITL 3 CRYSTALLOGRAPHY, SIMULATED DYNAMICS AND MOLECULAR MODELING JRNL REF J.MOL.BIOL. V. 328 909 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12729763 JRNL DOI 10.1016/S0022-2836(03)00350-4 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 133179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6758 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6497 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 424 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 474 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.93000 REMARK 3 B22 (A**2) : -2.26000 REMARK 3 B33 (A**2) : 5.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.110 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.650 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.220 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.330 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 47.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : SO4_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : 2PG.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : SO4_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : 2PGRENUM.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1290011867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 170.0 REMARK 200 PH : 6.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD INSTRUMENTS (PX210) REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 133179 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 51.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EQJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CITRATE, ZINC REMARK 280 ACETATE, CELSIUM CHLORIDE, PEG200, BETA- MERCAPTOETHANOL, PH 6.70 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.50900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.50900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.25750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 102.89350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.25750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.89350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.50900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.25750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 102.89350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.50900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.25750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 102.89350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2251 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2275 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 511 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 S SO4 A 905 S SO4 A 905 4565 0.35 REMARK 500 O3 SO4 A 905 O3 SO4 A 905 4565 0.52 REMARK 500 O1 SO4 A 905 O4 SO4 A 905 4565 0.89 REMARK 500 S SO4 A 905 O4 SO4 A 905 4565 1.23 REMARK 500 S SO4 A 905 O3 SO4 A 905 4565 1.29 REMARK 500 O2 SO4 A 905 O4 SO4 A 905 4565 1.53 REMARK 500 S SO4 A 905 O1 SO4 A 905 4565 1.67 REMARK 500 S SO4 A 905 O2 SO4 A 905 4565 1.75 REMARK 500 O4 SO4 A 905 O4 SO4 A 905 4565 1.99 REMARK 500 O2 SO4 A 905 O3 SO4 A 905 4565 1.99 REMARK 500 O1 SO4 A 905 O2 SO4 A 905 4565 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 -170.82 -170.60 REMARK 500 THR A 109 -154.18 -112.41 REMARK 500 ASP A 151 -95.52 -89.37 REMARK 500 ASP A 230 -63.90 -25.30 REMARK 500 ALA A 247 136.95 -171.67 REMARK 500 TYR A 258 33.13 -84.61 REMARK 500 THR A 341 -89.04 -110.79 REMARK 500 LYS A 371 74.24 -155.35 REMARK 500 MET A 374 -128.09 41.35 REMARK 500 HIS A 445 171.28 172.21 REMARK 500 ASN A 447 -66.90 -179.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 2354 REMARK 615 HOH A 2415 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD2 REMARK 620 2 ASP A 12 OD1 53.4 REMARK 620 3 SER A 62 OG 112.7 91.0 REMARK 620 4 ASP A 444 OD2 118.2 82.6 108.4 REMARK 620 5 HIS A 445 NE2 104.1 153.1 113.4 99.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 403 OD1 REMARK 620 2 ASP A 403 OD2 53.1 REMARK 620 3 HIS A 407 NE2 102.5 92.9 REMARK 620 4 HIS A 462 NE2 101.8 152.9 103.7 REMARK 620 5 2PG A 801 O4P 101.9 75.2 137.7 104.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PG A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EJJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURAL ANALYSIS OF PHOSPHOGLYCERATE MUTASE REMARK 900 COCRYSTALLIZED WITH 3-PHOSPHOGLYCERATE REMARK 900 RELATED ID: 1EQJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE MUTASE FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS COMPLEXED WITH 2-PHOSPHOGLYCERATE REMARK 900 RELATED ID: 1O99 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE S62A MUTANT OF PHOSPHOGLYCERATE MUTASE REMARK 900 FROM BACILLUS STEAROTHERMOPHILUS COMPLEXED WITH 2-PHOSPHOGLYCERATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A DISCREPANCY BETWEEN THE OBSERVED SEQUENCE FOR REMARK 999 THIS ENTRY AND THAT PROVIDED FOR IN THE SWISS-PROT ENTRY REMARK 999 Q9X519. THE AUTHORS OF THIS ENTRY HAVE IDENTIFIED RESIDUE REMARK 999 AS POSITION 351 TO BE A GLU, WHEREAS THE SWISS-PROT ENTRY REMARK 999 CONTAINS A LYSINE AT THE SAME POSITION. DBREF 1O98 A 1 511 UNP Q9X519 Q9X519 1 511 SEQADV 1O98 GLU A 351 UNP Q9X519 LYS 351 CONFLICT SEQRES 1 A 511 MET SER LYS LYS PRO VAL ALA LEU ILE ILE LEU ASP GLY SEQRES 2 A 511 PHE ALA LEU ARG ASP GLU THR TYR GLY ASN ALA VAL ALA SEQRES 3 A 511 GLN ALA ASN LYS PRO ASN PHE ASP ARG TYR TRP ASN GLU SEQRES 4 A 511 TYR PRO HIS THR THR LEU LYS ALA CYS GLY GLU ALA VAL SEQRES 5 A 511 GLY LEU PRO GLU GLY GLN MET GLY ASN SER GLU VAL GLY SEQRES 6 A 511 HIS LEU ASN ILE GLY ALA GLY ARG ILE VAL TYR GLN SER SEQRES 7 A 511 LEU THR ARG ILE ASN ILE ALA ILE ARG GLU GLY GLU PHE SEQRES 8 A 511 ASP ARG ASN GLU THR PHE LEU ALA ALA MET ASN HIS VAL SEQRES 9 A 511 LYS GLN HIS GLY THR SER LEU HIS LEU PHE GLY LEU LEU SEQRES 10 A 511 SER ASP GLY GLY VAL HIS SER HIS ILE HIS HIS LEU TYR SEQRES 11 A 511 ALA LEU LEU ARG LEU ALA ALA LYS GLU GLY VAL LYS ARG SEQRES 12 A 511 VAL TYR ILE HIS GLY PHE LEU ASP GLY ARG ASP VAL GLY SEQRES 13 A 511 PRO GLN THR ALA PRO GLN TYR ILE LYS GLU LEU GLN GLU SEQRES 14 A 511 LYS ILE LYS GLU TYR GLY VAL GLY GLU ILE ALA THR LEU SEQRES 15 A 511 SER GLY ARG TYR TYR SER MET ASP ARG ASP LYS ARG TRP SEQRES 16 A 511 ASP ARG VAL GLU LYS ALA TYR ARG ALA MET VAL TYR GLY SEQRES 17 A 511 GLU GLY PRO THR TYR ARG ASP PRO LEU GLU CYS ILE GLU SEQRES 18 A 511 ASP SER TYR LYS HIS GLY ILE TYR ASP GLU PHE VAL LEU SEQRES 19 A 511 PRO SER VAL ILE VAL ARG GLU ASP GLY ARG PRO VAL ALA SEQRES 20 A 511 THR ILE GLN ASP ASN ASP ALA ILE ILE PHE TYR ASN PHE SEQRES 21 A 511 ARG PRO ASP ARG ALA ILE GLN ILE SER ASN THR PHE THR SEQRES 22 A 511 ASN GLU ASP PHE ARG GLU PHE ASP ARG GLY PRO LYS HIS SEQRES 23 A 511 PRO LYS HIS LEU PHE PHE VAL CYS LEU THR HIS PHE SER SEQRES 24 A 511 GLU THR VAL ALA GLY TYR VAL ALA PHE LYS PRO THR ASN SEQRES 25 A 511 LEU ASP ASN THR ILE GLY GLU VAL LEU SER GLN HIS GLY SEQRES 26 A 511 LEU ARG GLN LEU ARG ILE ALA GLU THR GLU LYS TYR PRO SEQRES 27 A 511 HIS VAL THR PHE PHE MET SER GLY GLY ARG GLU GLU GLU SEQRES 28 A 511 PHE PRO GLY GLU ASP ARG ILE LEU ILE ASN SER PRO LYS SEQRES 29 A 511 VAL PRO THR TYR ASP LEU LYS PRO GLU MET SER ALA TYR SEQRES 30 A 511 GLU VAL THR ASP ALA LEU LEU LYS GLU ILE GLU ALA ASP SEQRES 31 A 511 LYS TYR ASP ALA ILE ILE LEU ASN TYR ALA ASN PRO ASP SEQRES 32 A 511 MET VAL GLY HIS SER GLY LYS LEU GLU PRO THR ILE LYS SEQRES 33 A 511 ALA VAL GLU ALA VAL ASP GLU CYS LEU GLY LYS VAL VAL SEQRES 34 A 511 ASP ALA ILE LEU ALA LYS GLY GLY ILE ALA ILE ILE THR SEQRES 35 A 511 ALA ASP HIS GLY ASN ALA ASP GLU VAL LEU THR PRO ASP SEQRES 36 A 511 GLY LYS PRO GLN THR ALA HIS THR THR ASN PRO VAL PRO SEQRES 37 A 511 VAL ILE VAL THR LYS LYS GLY ILE LYS LEU ARG ASP GLY SEQRES 38 A 511 GLY ILE LEU GLY ASP LEU ALA PRO THR MET LEU ASP LEU SEQRES 39 A 511 LEU GLY LEU PRO GLN PRO LYS GLU MET THR GLY LYS SER SEQRES 40 A 511 LEU ILE VAL LYS HET MN A 601 1 HET MN A 701 1 HET 2PG A 801 11 HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HET SO4 A 905 5 HET SO4 A 906 5 HETNAM MN MANGANESE (II) ION HETNAM 2PG 2-PHOSPHOGLYCERIC ACID HETNAM SO4 SULFATE ION FORMUL 2 MN 2(MN 2+) FORMUL 4 2PG C3 H7 O7 P FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *474(H2 O) HELIX 1 1 ASN A 23 ALA A 28 1 6 HELIX 2 2 LYS A 30 TYR A 40 1 11 HELIX 3 3 CYS A 48 GLY A 53 5 6 HELIX 4 4 ASN A 61 GLY A 72 1 12 HELIX 5 5 GLN A 77 GLU A 88 1 12 HELIX 6 6 GLU A 90 ARG A 93 5 4 HELIX 7 7 ASN A 94 GLY A 108 1 15 HELIX 8 8 HIS A 125 GLU A 139 1 15 HELIX 9 9 THR A 159 GLY A 175 1 17 HELIX 10 10 ARG A 185 MET A 189 1 5 HELIX 11 11 ARG A 194 GLY A 208 1 15 HELIX 12 12 ASP A 215 HIS A 226 1 12 HELIX 13 13 TYR A 229 VAL A 233 5 5 HELIX 14 14 ALA A 265 ASN A 274 1 10 HELIX 15 15 THR A 316 HIS A 324 1 9 HELIX 16 16 LYS A 336 THR A 341 1 6 HELIX 17 17 THR A 367 LYS A 371 5 5 HELIX 18 18 SER A 375 ALA A 389 1 15 HELIX 19 19 ALA A 400 HIS A 407 1 8 HELIX 20 20 LYS A 410 LYS A 435 1 26 HELIX 21 21 ASP A 486 GLY A 496 1 11 SHEET 1 AA 8 GLU A 355 ILE A 360 0 SHEET 2 AA 8 GLN A 328 GLU A 333 1 O GLN A 328 N ASP A 356 SHEET 3 AA 8 ALA A 394 TYR A 399 1 O ALA A 394 N LEU A 329 SHEET 4 AA 8 VAL A 6 LEU A 11 1 O VAL A 6 N ILE A 395 SHEET 5 AA 8 ILE A 438 THR A 442 1 O ILE A 438 N ALA A 7 SHEET 6 AA 8 VAL A 467 VAL A 471 -1 O ILE A 470 N ILE A 441 SHEET 7 AA 8 HIS A 42 LYS A 46 -1 O THR A 43 N VAL A 469 SHEET 8 AA 8 GLY A 482 ILE A 483 1 O GLY A 482 N LYS A 46 SHEET 1 AB 8 THR A 212 TYR A 213 0 SHEET 2 AB 8 SER A 236 ILE A 238 1 O VAL A 237 N TYR A 213 SHEET 3 AB 8 GLU A 178 GLY A 184 -1 O ALA A 180 N ILE A 238 SHEET 4 AB 8 VAL A 144 LEU A 150 1 O VAL A 144 N GLU A 178 SHEET 5 AB 8 LEU A 111 LEU A 116 1 O LEU A 111 N TYR A 145 SHEET 6 AB 8 ALA A 254 PHE A 257 1 O ALA A 254 N HIS A 112 SHEET 7 AB 8 PHE A 291 CYS A 294 1 O PHE A 291 N ILE A 255 SHEET 8 AB 8 TYR A 305 VAL A 306 1 O TYR A 305 N CYS A 294 LINK OD2 ASP A 12 MN MN A 701 1555 1555 2.06 LINK OD1 ASP A 12 MN MN A 701 1555 1555 2.68 LINK OG SER A 62 MN MN A 701 1555 1555 2.00 LINK OD1 ASP A 403 MN MN A 601 1555 1555 2.05 LINK OD2 ASP A 403 MN MN A 601 1555 1555 2.70 LINK NE2 HIS A 407 MN MN A 601 1555 1555 2.06 LINK OD2 ASP A 444 MN MN A 701 1555 1555 2.04 LINK NE2 HIS A 445 MN MN A 701 1555 1555 2.12 LINK NE2 HIS A 462 MN MN A 601 1555 1555 2.05 LINK MN MN A 601 O4P 2PG A 801 1555 1555 2.11 SITE 1 AC1 4 ASP A 403 HIS A 407 HIS A 462 2PG A 801 SITE 1 AC2 5 ASP A 12 SER A 62 ASP A 444 HIS A 445 SITE 2 AC2 5 2PG A 801 SITE 1 AC3 7 HIS A 297 SER A 299 GLU A 300 PHE A 342 SITE 2 AC3 7 GLU A 349 HOH A2462 HOH A2463 SITE 1 AC4 6 ARG A 194 ASP A 196 ARG A 197 HOH A2230 SITE 2 AC4 6 HOH A2243 HOH A2464 SITE 1 AC5 4 ARG A 17 HOH A2466 HOH A2467 HOH A2469 SITE 1 AC6 7 TYR A 337 GLU A 351 ARG A 357 HOH A2470 SITE 2 AC6 7 HOH A2471 HOH A2472 HOH A2473 SITE 1 AC7 4 ARG A 134 LYS A 170 TYR A 174 HOH A2474 SITE 1 AC8 7 LYS A 200 ARG A 203 TYR A 207 GLY A 283 SITE 2 AC8 7 PRO A 284 HOH A2249 HOH A2306 SITE 1 AC9 16 ASN A 61 SER A 62 HIS A 123 ARG A 153 SITE 2 AC9 16 ASP A 154 ARG A 185 ARG A 191 ARG A 261 SITE 3 AC9 16 ARG A 264 LYS A 336 ASP A 403 HIS A 407 SITE 4 AC9 16 HIS A 462 MN A 601 MN A 701 HOH A2461 CRYST1 58.515 205.787 125.018 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007999 0.00000