data_1O9M # _entry.id 1O9M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O9M pdb_00001o9m 10.2210/pdb1o9m/pdb PDBE EBI-11740 ? ? WWPDB D_1290011740 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1O9M _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2002-12-17 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Russell, R.' 1 'Murray, J.B.' 2 # _citation.id primary _citation.title 'The Complex of a Designer Antibiotic with a Model Aminoacyl Site of the 30S Ribosomal Subunit Revealed by X-Ray Crystallography' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 125 _citation.page_first 3410 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12643685 _citation.pdbx_database_id_DOI 10.1021/JA029736H # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Russell, R.' 1 ? primary 'Murray, J.B.' 2 ? primary 'Lentzen, G.' 3 ? primary 'Haddad, J.' 4 ? primary 'Mobashery, S.' 5 ? # _cell.entry_id 1O9M _cell.length_a 32.800 _cell.length_b 46.550 _cell.length_c 88.810 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1O9M _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'EUBACTERIAL A-SITE' 7048.259 2 ? ? ? ? 2 non-polymer man 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose 178.186 1 ? ? ? ? 3 non-polymer syn 'PAROMOMYCIN (RING 2)' 146.188 1 ? ? ? ? 4 non-polymer syn '1-(AMINOETHYL)AMINO-4-AMINOBUTANE' 131.219 1 ? ? ? ? 5 non-polymer syn '4-AMINO-2-HYDROXYBUTANOIC ACID' 119.119 1 ? ? ? ? 6 water nat water 18.015 63 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can CGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 C n 1 7 A n 1 8 C n 1 9 A n 1 10 C n 1 11 C n 1 12 G n 1 13 G n 1 14 U n 1 15 G n 1 16 A n 1 17 A n 1 18 G n 1 19 U n 1 20 C n 1 21 G n 1 22 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'ESCHERICHIA COLI' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1O9M _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 1O9M _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1O9M A 1 ? 11 ? 1O9M 1402 ? 1412 ? 1402 1412 2 1 1O9M A 12 ? 22 ? 1O9M 1488 ? 1498 ? 1488 1498 3 1 1O9M B 1 ? 11 ? 1O9M 1402 ? 1412 ? 1402 1412 4 1 1O9M B 12 ? 22 ? 1O9M 1488 ? 1498 ? 1488 1498 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 42B non-polymer . '4-AMINO-2-HYDROXYBUTANOIC ACID' ? 'C4 H9 N O3' 119.119 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BDG 'D-saccharide, alpha linking' . 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose ;O-2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSE; 2,6-diamino-2,6-dideoxy-alpha-D-glucose; 2,6-diamino-2,6-dideoxy-D-glucose; 2,6-diamino-2,6-dideoxy-glucose ; 'C6 H14 N2 O4' 178.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 P24 non-polymer . '1-(AMINOETHYL)AMINO-4-AMINOBUTANE' 'PA(24)' 'C6 H17 N3' 131.219 PA2 non-polymer . 'PAROMOMYCIN (RING 2)' ? 'C6 H14 N2 O2' 146.188 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 1O9M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.85 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.40 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'MPD, NACL, MGSO4, GLYCEROL, NA CACODYLATE, pH 6.40' # _diffrn.id 1 _diffrn.ambient_temp 273.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1O9M _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 32243 _reflns.number_all ? _reflns.percent_possible_obs 94.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06900 _reflns.pdbx_netI_over_sigmaI 19.6000 _reflns.B_iso_Wilson_estimate 68.9 _reflns.pdbx_redundancy 6.000 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 97.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.58000 _reflns_shell.meanI_over_sigI_obs 1.900 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1O9M _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5247 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.0 _refine.ls_d_res_high 2.4 _refine.ls_percent_reflns_obs 92.2 _refine.ls_R_factor_obs 0.2507 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2507 _refine.ls_R_factor_R_free 0.2981 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 563 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.9 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.31 _refine.solvent_model_param_bsol 65 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1J7T' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 892 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 992 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0057 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.05 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1O9M _struct.title 'The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1O9M _struct_keywords.pdbx_keywords ANTIBIOTIC/RNA _struct_keywords.text 'ANTIBIOTIC/RNA, RNA-ANTIBIOTIC INTERACTIONS, A-SITE, ANTIBIOTIC-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C BDG . O1 ? ? ? 1_555 D PA2 . C4 ? ? B BDG 2499 B PA2 2500 1_555 ? ? ? ? ? ? ? 1.456 ? ? covale2 covale one ? D PA2 . O2 ? ? ? 1_555 E P24 . C2 ? ? B PA2 2500 B P24 2501 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale3 covale one ? D PA2 . N1 ? ? ? 1_555 F 42B . C3 ? ? B PA2 2500 B 42B 2502 1_555 ? ? ? ? ? ? ? 1.774 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 1403 B C 1498 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 1403 B C 1498 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 1403 B C 1498 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 21 N1 ? ? A C 1404 B G 1497 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 21 O6 ? ? A C 1404 B G 1497 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 21 N2 ? ? A C 1404 B G 1497 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 1405 B C 1496 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 1405 B C 1496 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 1405 B C 1496 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 18 N1 ? ? A C 1407 B G 1494 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 18 O6 ? ? A C 1407 B G 1494 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 18 N2 ? ? A C 1407 B G 1494 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 1409 B G 1491 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 1409 B G 1491 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 1409 B G 1491 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 14 N3 ? ? A A 1410 B U 1490 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 14 O4 ? ? A A 1410 B U 1490 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 1411 B G 1489 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 1411 B G 1489 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 1411 B G 1489 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 1412 B G 1488 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 1412 B G 1488 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 1412 B G 1488 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 1488 B C 1412 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 1488 B C 1412 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 1488 B C 1412 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 1489 B C 1411 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 1489 B C 1411 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 1489 B C 1411 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 14 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 1490 B A 1410 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 1490 B A 1410 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1491 B C 1409 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1491 B C 1409 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1491 B C 1409 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 17 N6 ? ? ? 1_555 B A 7 N1 ? ? A A 1493 B A 1408 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog36 hydrog ? ? A A 17 N6 ? ? ? 1_555 B C 8 O2 ? ? A A 1493 B C 1409 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 1494 B C 1407 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 1494 B C 1407 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 1494 B C 1407 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 19 N3 ? ? ? 1_555 B U 5 O2 ? ? A U 1495 B U 1406 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog41 hydrog ? ? A U 19 O4 ? ? ? 1_555 B U 5 N3 ? ? A U 1495 B U 1406 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog42 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 1496 B G 1405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 1496 B G 1405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 1496 B G 1405 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 21 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 1497 B C 1404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 21 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 1497 B C 1404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 21 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 1497 B C 1404 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 22 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 1498 B G 1403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 22 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 1498 B G 1403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 22 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 1498 B G 1403 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1O9M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1O9M _atom_sites.fract_transf_matrix[1][1] 0.030488 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021482 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011260 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1402 ? ? ? A . n A 1 2 G 2 1403 1403 G G A . n A 1 3 C 3 1404 1404 C C A . n A 1 4 G 4 1405 1405 G G A . n A 1 5 U 5 1406 1406 U U A . n A 1 6 C 6 1407 1407 C C A . n A 1 7 A 7 1408 1408 A A A . n A 1 8 C 8 1409 1409 C C A . n A 1 9 A 9 1410 1410 A A A . n A 1 10 C 10 1411 1411 C C A . n A 1 11 C 11 1412 1412 C C A . n A 1 12 G 12 1488 1488 G G A . n A 1 13 G 13 1489 1489 G G A . n A 1 14 U 14 1490 1490 U U A . n A 1 15 G 15 1491 1491 G G A . n A 1 16 A 16 1492 1492 A A A . n A 1 17 A 17 1493 1493 A A A . n A 1 18 G 18 1494 1494 G G A . n A 1 19 U 19 1495 1495 U U A . n A 1 20 C 20 1496 1496 C C A . n A 1 21 G 21 1497 1497 G G A . n A 1 22 C 22 1498 1498 C C A . n B 1 1 C 1 1402 ? ? ? B . n B 1 2 G 2 1403 1403 G G B . n B 1 3 C 3 1404 1404 C C B . n B 1 4 G 4 1405 1405 G G B . n B 1 5 U 5 1406 1406 U U B . n B 1 6 C 6 1407 1407 C C B . n B 1 7 A 7 1408 1408 A A B . n B 1 8 C 8 1409 1409 C C B . n B 1 9 A 9 1410 1410 A A B . n B 1 10 C 10 1411 1411 C C B . n B 1 11 C 11 1412 1412 C C B . n B 1 12 G 12 1488 1488 G G B . n B 1 13 G 13 1489 1489 G G B . n B 1 14 U 14 1490 1490 U U B . n B 1 15 G 15 1491 1491 G G B . n B 1 16 A 16 1492 1492 A A B . n B 1 17 A 17 1493 1493 A A B . n B 1 18 G 18 1494 1494 G G B . n B 1 19 U 19 1495 1495 U U B . n B 1 20 C 20 1496 1496 C C B . n B 1 21 G 21 1497 1497 G G B . n B 1 22 C 22 1498 1498 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BDG 1 2499 2499 BDG BDG B . D 3 PA2 1 2500 2500 PA2 PA2 B . E 4 P24 1 2501 2501 P24 P24 B . F 5 42B 1 2502 2502 42B 42B B . G 6 HOH 1 2001 2001 HOH HOH A . G 6 HOH 2 2002 2002 HOH HOH A . G 6 HOH 3 2003 2003 HOH HOH A . G 6 HOH 4 2004 2004 HOH HOH A . G 6 HOH 5 2005 2005 HOH HOH A . G 6 HOH 6 2006 2006 HOH HOH A . G 6 HOH 7 2007 2007 HOH HOH A . G 6 HOH 8 2008 2008 HOH HOH A . G 6 HOH 9 2009 2009 HOH HOH A . G 6 HOH 10 2010 2010 HOH HOH A . G 6 HOH 11 2011 2011 HOH HOH A . G 6 HOH 12 2012 2012 HOH HOH A . G 6 HOH 13 2013 2013 HOH HOH A . G 6 HOH 14 2014 2014 HOH HOH A . G 6 HOH 15 2015 2015 HOH HOH A . G 6 HOH 16 2016 2016 HOH HOH A . G 6 HOH 17 2017 2017 HOH HOH A . G 6 HOH 18 2018 2018 HOH HOH A . G 6 HOH 19 2019 2019 HOH HOH A . G 6 HOH 20 2020 2020 HOH HOH A . G 6 HOH 21 2021 2021 HOH HOH A . G 6 HOH 22 2022 2022 HOH HOH A . G 6 HOH 23 2023 2023 HOH HOH A . G 6 HOH 24 2024 2024 HOH HOH A . G 6 HOH 25 2025 2025 HOH HOH A . G 6 HOH 26 2026 2026 HOH HOH A . G 6 HOH 27 2027 2027 HOH HOH A . G 6 HOH 28 2028 2028 HOH HOH A . G 6 HOH 29 2029 2029 HOH HOH A . G 6 HOH 30 2030 2030 HOH HOH A . H 6 HOH 1 2001 2001 HOH HOH B . H 6 HOH 2 2002 2002 HOH HOH B . H 6 HOH 3 2003 2003 HOH HOH B . H 6 HOH 4 2004 2004 HOH HOH B . H 6 HOH 5 2005 2005 HOH HOH B . H 6 HOH 6 2006 2006 HOH HOH B . H 6 HOH 7 2007 2007 HOH HOH B . H 6 HOH 8 2008 2008 HOH HOH B . H 6 HOH 9 2009 2009 HOH HOH B . H 6 HOH 10 2010 2010 HOH HOH B . H 6 HOH 11 2011 2011 HOH HOH B . H 6 HOH 12 2012 2012 HOH HOH B . H 6 HOH 13 2013 2013 HOH HOH B . H 6 HOH 14 2014 2014 HOH HOH B . H 6 HOH 15 2015 2015 HOH HOH B . H 6 HOH 16 2016 2016 HOH HOH B . H 6 HOH 17 2017 2017 HOH HOH B . H 6 HOH 18 2018 2018 HOH HOH B . H 6 HOH 19 2019 2019 HOH HOH B . H 6 HOH 20 2020 2020 HOH HOH B . H 6 HOH 21 2021 2021 HOH HOH B . H 6 HOH 22 2022 2022 HOH HOH B . H 6 HOH 23 2023 2023 HOH HOH B . H 6 HOH 24 2024 2024 HOH HOH B . H 6 HOH 25 2025 2025 HOH HOH B . H 6 HOH 26 2026 2026 HOH HOH B . H 6 HOH 27 2027 2027 HOH HOH B . H 6 HOH 28 2028 2028 HOH HOH B . H 6 HOH 29 2029 2029 HOH HOH B . H 6 HOH 30 2030 2030 HOH HOH B . H 6 HOH 31 2031 2031 HOH HOH B . H 6 HOH 32 2032 2032 HOH HOH B . H 6 HOH 33 2033 2033 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-03-27 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2023-12-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Refinement description' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 4 'Structure model' struct_site_gen 8 5 'Structure model' chem_comp 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond 11 5 'Structure model' database_2 12 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_dist_value' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 5 'Structure model' '_chem_comp.pdbx_synonyms' 14 5 'Structure model' '_database_2.pdbx_DOI' 15 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A G 1403 ? P ? A G 2 P 2 1 Y 1 A G 1403 ? OP1 ? A G 2 OP1 3 1 Y 1 A G 1403 ? OP2 ? A G 2 OP2 4 1 Y 1 B G 1403 ? P ? B G 2 P 5 1 Y 1 B G 1403 ? OP1 ? B G 2 OP1 6 1 Y 1 B G 1403 ? OP2 ? B G 2 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 1402 ? A C 1 2 1 Y 1 B C 1402 ? B C 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 42B N1 N N N 1 42B C3 C N N 2 42B O3 O N N 3 42B C4 C N R 4 42B O4 O N N 5 42B C5 C N N 6 42B C6 C N N 7 42B O31 O N N 8 42B H1N1 H N N 9 42B H1N2 H N N 10 42B H4 H N N 11 42B HA H N N 12 42B H5C1 H N N 13 42B H5C2 H N N 14 42B H6C1 H N N 15 42B H6C2 H N N 16 42B "HO'" H N N 17 A OP3 O N N 18 A P P N N 19 A OP1 O N N 20 A OP2 O N N 21 A "O5'" O N N 22 A "C5'" C N N 23 A "C4'" C N R 24 A "O4'" O N N 25 A "C3'" C N S 26 A "O3'" O N N 27 A "C2'" C N R 28 A "O2'" O N N 29 A "C1'" C N R 30 A N9 N Y N 31 A C8 C Y N 32 A N7 N Y N 33 A C5 C Y N 34 A C6 C Y N 35 A N6 N N N 36 A N1 N Y N 37 A C2 C Y N 38 A N3 N Y N 39 A C4 C Y N 40 A HOP3 H N N 41 A HOP2 H N N 42 A "H5'" H N N 43 A "H5''" H N N 44 A "H4'" H N N 45 A "H3'" H N N 46 A "HO3'" H N N 47 A "H2'" H N N 48 A "HO2'" H N N 49 A "H1'" H N N 50 A H8 H N N 51 A H61 H N N 52 A H62 H N N 53 A H2 H N N 54 BDG C5 C N R 55 BDG O5 O N N 56 BDG C1 C N S 57 BDG O1 O N N 58 BDG C2 C N R 59 BDG N2 N N N 60 BDG C3 C N R 61 BDG O3 O N N 62 BDG C4 C N S 63 BDG O4 O N N 64 BDG C6 C N N 65 BDG N6 N N N 66 BDG H5 H N N 67 BDG H1 H N N 68 BDG HO1 H N N 69 BDG H2 H N N 70 BDG HN21 H N N 71 BDG HN22 H N N 72 BDG H3 H N N 73 BDG HO3 H N N 74 BDG H4 H N N 75 BDG HO4 H N N 76 BDG H61 H N N 77 BDG H62 H N N 78 BDG HN61 H N N 79 BDG HN62 H N N 80 C OP3 O N N 81 C P P N N 82 C OP1 O N N 83 C OP2 O N N 84 C "O5'" O N N 85 C "C5'" C N N 86 C "C4'" C N R 87 C "O4'" O N N 88 C "C3'" C N S 89 C "O3'" O N N 90 C "C2'" C N R 91 C "O2'" O N N 92 C "C1'" C N R 93 C N1 N N N 94 C C2 C N N 95 C O2 O N N 96 C N3 N N N 97 C C4 C N N 98 C N4 N N N 99 C C5 C N N 100 C C6 C N N 101 C HOP3 H N N 102 C HOP2 H N N 103 C "H5'" H N N 104 C "H5''" H N N 105 C "H4'" H N N 106 C "H3'" H N N 107 C "HO3'" H N N 108 C "H2'" H N N 109 C "HO2'" H N N 110 C "H1'" H N N 111 C H41 H N N 112 C H42 H N N 113 C H5 H N N 114 C H6 H N N 115 G OP3 O N N 116 G P P N N 117 G OP1 O N N 118 G OP2 O N N 119 G "O5'" O N N 120 G "C5'" C N N 121 G "C4'" C N R 122 G "O4'" O N N 123 G "C3'" C N S 124 G "O3'" O N N 125 G "C2'" C N R 126 G "O2'" O N N 127 G "C1'" C N R 128 G N9 N Y N 129 G C8 C Y N 130 G N7 N Y N 131 G C5 C Y N 132 G C6 C N N 133 G O6 O N N 134 G N1 N N N 135 G C2 C N N 136 G N2 N N N 137 G N3 N N N 138 G C4 C Y N 139 G HOP3 H N N 140 G HOP2 H N N 141 G "H5'" H N N 142 G "H5''" H N N 143 G "H4'" H N N 144 G "H3'" H N N 145 G "HO3'" H N N 146 G "H2'" H N N 147 G "HO2'" H N N 148 G "H1'" H N N 149 G H8 H N N 150 G H1 H N N 151 G H21 H N N 152 G H22 H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 P24 N1 N N N 157 P24 C2 C N N 158 P24 C3 C N N 159 P24 N4 N N N 160 P24 C5 C N N 161 P24 C6 C N N 162 P24 C7 C N N 163 P24 C8 C N N 164 P24 N9 N N N 165 P24 HN11 H N N 166 P24 HN12 H N N 167 P24 H21 H N N 168 P24 H22 H N N 169 P24 H31 H N N 170 P24 H32 H N N 171 P24 HN4 H N N 172 P24 H51 H N N 173 P24 H52 H N N 174 P24 H61 H N N 175 P24 H62 H N N 176 P24 H71 H N N 177 P24 H72 H N N 178 P24 H81 H N N 179 P24 H82 H N N 180 P24 HN91 H N N 181 P24 HN92 H N N 182 PA2 C1 C N R 183 PA2 N1 N N N 184 PA2 C2 C N S 185 PA2 O2 O N N 186 PA2 C3 C N S 187 PA2 O3 O N N 188 PA2 C4 C N N 189 PA2 C5 C N S 190 PA2 N5 N N N 191 PA2 C6 C N N 192 PA2 H1 H N N 193 PA2 HN11 H N N 194 PA2 HN12 H N N 195 PA2 H2 H N N 196 PA2 HO2 H N N 197 PA2 H3 H N N 198 PA2 HO3 H N N 199 PA2 H41 H N N 200 PA2 H42 H N N 201 PA2 H5 H N N 202 PA2 HN51 H N N 203 PA2 HN52 H N N 204 PA2 H61 H N N 205 PA2 H62 H N N 206 U OP3 O N N 207 U P P N N 208 U OP1 O N N 209 U OP2 O N N 210 U "O5'" O N N 211 U "C5'" C N N 212 U "C4'" C N R 213 U "O4'" O N N 214 U "C3'" C N S 215 U "O3'" O N N 216 U "C2'" C N R 217 U "O2'" O N N 218 U "C1'" C N R 219 U N1 N N N 220 U C2 C N N 221 U O2 O N N 222 U N3 N N N 223 U C4 C N N 224 U O4 O N N 225 U C5 C N N 226 U C6 C N N 227 U HOP3 H N N 228 U HOP2 H N N 229 U "H5'" H N N 230 U "H5''" H N N 231 U "H4'" H N N 232 U "H3'" H N N 233 U "HO3'" H N N 234 U "H2'" H N N 235 U "HO2'" H N N 236 U "H1'" H N N 237 U H3 H N N 238 U H5 H N N 239 U H6 H N N 240 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 42B N1 C6 sing N N 1 42B N1 H1N1 sing N N 2 42B N1 H1N2 sing N N 3 42B C3 O3 doub N N 4 42B C3 C4 sing N N 5 42B C3 O31 sing N N 6 42B C4 O4 sing N N 7 42B C4 C5 sing N N 8 42B C4 H4 sing N N 9 42B O4 HA sing N N 10 42B C5 C6 sing N N 11 42B C5 H5C1 sing N N 12 42B C5 H5C2 sing N N 13 42B C6 H6C1 sing N N 14 42B C6 H6C2 sing N N 15 42B O31 "HO'" sing N N 16 A OP3 P sing N N 17 A OP3 HOP3 sing N N 18 A P OP1 doub N N 19 A P OP2 sing N N 20 A P "O5'" sing N N 21 A OP2 HOP2 sing N N 22 A "O5'" "C5'" sing N N 23 A "C5'" "C4'" sing N N 24 A "C5'" "H5'" sing N N 25 A "C5'" "H5''" sing N N 26 A "C4'" "O4'" sing N N 27 A "C4'" "C3'" sing N N 28 A "C4'" "H4'" sing N N 29 A "O4'" "C1'" sing N N 30 A "C3'" "O3'" sing N N 31 A "C3'" "C2'" sing N N 32 A "C3'" "H3'" sing N N 33 A "O3'" "HO3'" sing N N 34 A "C2'" "O2'" sing N N 35 A "C2'" "C1'" sing N N 36 A "C2'" "H2'" sing N N 37 A "O2'" "HO2'" sing N N 38 A "C1'" N9 sing N N 39 A "C1'" "H1'" sing N N 40 A N9 C8 sing Y N 41 A N9 C4 sing Y N 42 A C8 N7 doub Y N 43 A C8 H8 sing N N 44 A N7 C5 sing Y N 45 A C5 C6 sing Y N 46 A C5 C4 doub Y N 47 A C6 N6 sing N N 48 A C6 N1 doub Y N 49 A N6 H61 sing N N 50 A N6 H62 sing N N 51 A N1 C2 sing Y N 52 A C2 N3 doub Y N 53 A C2 H2 sing N N 54 A N3 C4 sing Y N 55 BDG C5 O5 sing N N 56 BDG C5 C4 sing N N 57 BDG C5 C6 sing N N 58 BDG C5 H5 sing N N 59 BDG O5 C1 sing N N 60 BDG C1 O1 sing N N 61 BDG C1 C2 sing N N 62 BDG C1 H1 sing N N 63 BDG O1 HO1 sing N N 64 BDG C2 N2 sing N N 65 BDG C2 C3 sing N N 66 BDG C2 H2 sing N N 67 BDG N2 HN21 sing N N 68 BDG N2 HN22 sing N N 69 BDG C3 O3 sing N N 70 BDG C3 C4 sing N N 71 BDG C3 H3 sing N N 72 BDG O3 HO3 sing N N 73 BDG C4 O4 sing N N 74 BDG C4 H4 sing N N 75 BDG O4 HO4 sing N N 76 BDG C6 N6 sing N N 77 BDG C6 H61 sing N N 78 BDG C6 H62 sing N N 79 BDG N6 HN61 sing N N 80 BDG N6 HN62 sing N N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 P24 N1 C2 sing N N 160 P24 N1 HN11 sing N N 161 P24 N1 HN12 sing N N 162 P24 C2 C3 sing N N 163 P24 C2 H21 sing N N 164 P24 C2 H22 sing N N 165 P24 C3 N4 sing N N 166 P24 C3 H31 sing N N 167 P24 C3 H32 sing N N 168 P24 N4 C5 sing N N 169 P24 N4 HN4 sing N N 170 P24 C5 C6 sing N N 171 P24 C5 H51 sing N N 172 P24 C5 H52 sing N N 173 P24 C6 C7 sing N N 174 P24 C6 H61 sing N N 175 P24 C6 H62 sing N N 176 P24 C7 C8 sing N N 177 P24 C7 H71 sing N N 178 P24 C7 H72 sing N N 179 P24 C8 N9 sing N N 180 P24 C8 H81 sing N N 181 P24 C8 H82 sing N N 182 P24 N9 HN91 sing N N 183 P24 N9 HN92 sing N N 184 PA2 C1 N1 sing N N 185 PA2 C1 C2 sing N N 186 PA2 C1 C6 sing N N 187 PA2 C1 H1 sing N N 188 PA2 N1 HN11 sing N N 189 PA2 N1 HN12 sing N N 190 PA2 C2 O2 sing N N 191 PA2 C2 C3 sing N N 192 PA2 C2 H2 sing N N 193 PA2 O2 HO2 sing N N 194 PA2 C3 O3 sing N N 195 PA2 C3 C4 sing N N 196 PA2 C3 H3 sing N N 197 PA2 O3 HO3 sing N N 198 PA2 C4 C5 sing N N 199 PA2 C4 H41 sing N N 200 PA2 C4 H42 sing N N 201 PA2 C5 N5 sing N N 202 PA2 C5 C6 sing N N 203 PA2 C5 H5 sing N N 204 PA2 N5 HN51 sing N N 205 PA2 N5 HN52 sing N N 206 PA2 C6 H61 sing N N 207 PA2 C6 H62 sing N N 208 U OP3 P sing N N 209 U OP3 HOP3 sing N N 210 U P OP1 doub N N 211 U P OP2 sing N N 212 U P "O5'" sing N N 213 U OP2 HOP2 sing N N 214 U "O5'" "C5'" sing N N 215 U "C5'" "C4'" sing N N 216 U "C5'" "H5'" sing N N 217 U "C5'" "H5''" sing N N 218 U "C4'" "O4'" sing N N 219 U "C4'" "C3'" sing N N 220 U "C4'" "H4'" sing N N 221 U "O4'" "C1'" sing N N 222 U "C3'" "O3'" sing N N 223 U "C3'" "C2'" sing N N 224 U "C3'" "H3'" sing N N 225 U "O3'" "HO3'" sing N N 226 U "C2'" "O2'" sing N N 227 U "C2'" "C1'" sing N N 228 U "C2'" "H2'" sing N N 229 U "O2'" "HO2'" sing N N 230 U "C1'" N1 sing N N 231 U "C1'" "H1'" sing N N 232 U N1 C2 sing N N 233 U N1 C6 sing N N 234 U C2 O2 doub N N 235 U C2 N3 sing N N 236 U N3 C4 sing N N 237 U N3 H3 sing N N 238 U C4 O4 doub N N 239 U C4 C5 sing N N 240 U C5 C6 doub N N 241 U C5 H5 sing N N 242 U C6 H6 sing N N 243 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1O9M 'double helix' 1O9M 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 B C 22 1_555 -0.581 -0.409 0.267 0.569 -6.556 -4.368 1 A_G1403:C1498_B A 1403 ? B 1498 ? 19 1 1 A C 3 1_555 B G 21 1_555 0.027 -0.141 0.302 -2.884 -7.979 1.337 2 A_C1404:G1497_B A 1404 ? B 1497 ? 19 1 1 A G 4 1_555 B C 20 1_555 0.405 -0.109 0.035 -1.092 -4.779 -3.307 3 A_G1405:C1496_B A 1405 ? B 1496 ? 19 1 1 A C 6 1_555 B G 18 1_555 0.277 -0.317 -0.081 2.967 -1.338 -1.973 4 A_C1407:G1494_B A 1407 ? B 1494 ? 19 1 1 A C 8 1_555 B G 15 1_555 0.003 -0.126 0.037 8.611 -22.657 0.871 5 A_C1409:G1491_B A 1409 ? B 1491 ? 19 1 1 A A 9 1_555 B U 14 1_555 0.437 0.027 0.134 0.667 -16.865 2.585 6 A_A1410:U1490_B A 1410 ? B 1490 ? 20 1 1 A C 10 1_555 B G 13 1_555 0.225 -0.073 0.264 6.391 -18.838 6.135 7 A_C1411:G1489_B A 1411 ? B 1489 ? 19 1 1 A C 11 1_555 B G 12 1_555 0.178 -0.117 0.182 -0.731 -12.754 0.281 8 A_C1412:G1488_B A 1412 ? B 1488 ? 19 1 1 A G 12 1_555 B C 11 1_555 -0.170 -0.087 0.203 -1.579 -14.532 0.589 9 A_G1488:C1412_B A 1488 ? B 1412 ? 19 1 1 A G 13 1_555 B C 10 1_555 -0.760 -0.252 -0.071 -4.334 -15.333 1.476 10 A_G1489:C1411_B A 1489 ? B 1411 ? 19 1 1 A U 14 1_555 B A 9 1_555 0.599 -0.391 0.327 -7.650 -15.334 1.018 11 A_U1490:A1410_B A 1490 ? B 1410 ? 20 1 1 A G 15 1_555 B C 8 1_555 -0.011 -0.527 0.763 -4.514 -13.911 -0.460 12 A_G1491:C1409_B A 1491 ? B 1409 ? 19 1 1 A A 17 1_555 B A 7 1_555 -2.936 -2.754 0.885 -25.657 -26.049 79.607 13 A_A1493:A1408_B A 1493 ? B 1408 ? ? ? 1 A G 18 1_555 B C 6 1_555 0.455 -0.302 -0.136 9.167 -7.417 -1.576 14 A_G1494:C1407_B A 1494 ? B 1407 ? 19 1 1 A U 19 1_555 B U 5 1_555 -1.589 -2.171 0.190 -2.263 -9.948 1.660 15 A_U1495:U1406_B A 1495 ? B 1406 ? 16 1 1 A C 20 1_555 B G 4 1_555 -0.141 -0.475 0.184 4.415 -14.206 0.211 16 A_C1496:G1405_B A 1496 ? B 1405 ? 19 1 1 A G 21 1_555 B C 3 1_555 0.412 -0.251 0.159 -4.234 -8.191 4.103 17 A_G1497:C1404_B A 1497 ? B 1404 ? 19 1 1 A C 22 1_555 B G 2 1_555 0.846 -0.457 -0.045 1.642 -3.935 -3.306 18 A_C1498:G1403_B A 1498 ? B 1403 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 B C 22 1_555 A C 3 1_555 B G 21 1_555 0.153 -1.975 3.408 -0.985 2.869 35.918 -3.607 -0.390 3.241 4.642 1.593 36.042 1 AA_G1403C1404:G1497C1498_BB A 1403 ? B 1498 ? A 1404 ? B 1497 ? 1 A C 3 1_555 B G 21 1_555 A G 4 1_555 B C 20 1_555 -0.799 -1.700 3.181 1.448 7.389 31.518 -4.233 1.665 2.685 13.365 -2.619 32.383 2 AA_C1404G1405:C1496G1497_BB A 1404 ? B 1497 ? A 1405 ? B 1496 ? 1 A C 6 1_555 B G 18 1_555 A C 8 1_555 B G 15 1_555 1.835 -3.369 6.237 -7.947 17.254 79.026 -3.400 -1.785 5.365 13.382 6.163 80.912 3 AA_C1407C1409:G1491G1494_BB A 1407 ? B 1494 ? A 1409 ? B 1491 ? 1 A C 8 1_555 B G 15 1_555 A A 9 1_555 B U 14 1_555 -0.195 -1.407 3.278 -0.838 14.639 35.435 -3.848 0.200 2.528 22.880 1.309 38.259 4 AA_C1409A1410:U1490G1491_BB A 1409 ? B 1491 ? A 1410 ? B 1490 ? 1 A A 9 1_555 B U 14 1_555 A C 10 1_555 B G 13 1_555 0.917 -2.044 3.068 0.867 -0.120 28.732 -4.092 -1.663 3.102 -0.242 -1.746 28.745 5 AA_A1410C1411:G1489U1490_BB A 1410 ? B 1490 ? A 1411 ? B 1489 ? 1 A C 10 1_555 B G 13 1_555 A C 11 1_555 B G 12 1_555 -0.896 -1.999 3.434 -1.856 6.929 28.838 -5.339 1.363 2.935 13.647 3.656 29.699 6 AA_C1411C1412:G1488G1489_BB A 1411 ? B 1489 ? A 1412 ? B 1488 ? 1 A C 11 1_555 B G 12 1_555 A G 12 1_555 B C 11 1_555 -0.317 -1.852 3.192 -1.681 6.606 27.157 -5.259 0.292 2.689 13.794 3.511 27.984 7 AA_C1412G1488:C1412G1488_BB A 1412 ? B 1488 ? A 1488 ? B 1412 ? 1 A G 12 1_555 B C 11 1_555 A G 13 1_555 B C 10 1_555 -0.090 -1.262 3.214 0.881 7.721 32.898 -3.347 0.289 2.849 13.401 -1.529 33.778 8 AA_G1488G1489:C1411C1412_BB A 1488 ? B 1412 ? A 1489 ? B 1411 ? 1 A G 13 1_555 B C 10 1_555 A U 14 1_555 B A 9 1_555 0.590 -1.197 3.253 -0.777 12.338 37.161 -3.181 -0.970 2.722 18.735 1.179 39.095 9 AA_G1489U1490:A1410C1411_BB A 1489 ? B 1411 ? A 1490 ? B 1410 ? 1 A U 14 1_555 B A 9 1_555 A G 15 1_555 B C 8 1_555 0.302 -1.518 2.935 -0.431 9.184 27.355 -4.737 -0.685 2.309 18.760 0.880 28.830 10 AA_U1490G1491:C1409A1410_BB A 1490 ? B 1410 ? A 1491 ? B 1409 ? 1 A G 15 1_555 B C 8 1_555 A A 17 1_555 B A 7 1_555 -1.119 2.280 2.659 152.290 5.068 -113.120 -1.177 0.242 2.801 -2.608 78.363 -164.880 11 AA_G1491A1493:A1408C1409_BB A 1491 ? B 1409 ? A 1493 ? B 1408 ? 1 A A 17 1_555 B A 7 1_555 A G 18 1_555 B C 6 1_555 5.044 0.543 1.849 -130.756 109.016 140.443 0.138 -2.683 0.551 54.691 65.598 176.701 12 AA_A1493G1494:C1407A1408_BB A 1493 ? B 1408 ? A 1494 ? B 1407 ? 1 A G 18 1_555 B C 6 1_555 A U 19 1_555 B U 5 1_555 0.012 -1.911 3.237 -9.451 6.818 29.935 -4.598 -1.601 2.626 12.614 17.485 32.075 13 AA_G1494U1495:U1406C1407_BB A 1494 ? B 1407 ? A 1495 ? B 1406 ? 1 A U 19 1_555 B U 5 1_555 A C 20 1_555 B G 4 1_555 -0.344 -1.118 3.064 -0.235 -2.658 40.223 -1.338 0.475 3.130 -3.860 0.341 40.308 14 AA_U1495C1496:G1405U1406_BB A 1495 ? B 1406 ? A 1496 ? B 1405 ? 1 A C 20 1_555 B G 4 1_555 A G 21 1_555 B C 3 1_555 -0.200 -1.917 3.357 0.346 7.176 29.499 -5.046 0.449 2.820 13.835 -0.667 30.342 15 AA_C1496G1497:C1404G1405_BB A 1496 ? B 1405 ? A 1497 ? B 1404 ? 1 A G 21 1_555 B C 3 1_555 A C 22 1_555 B G 2 1_555 -0.265 -2.058 3.231 2.038 1.850 32.850 -3.932 0.802 3.092 3.263 -3.595 32.962 16 AA_G1497C1498:G1403C1404_BB A 1497 ? B 1404 ? A 1498 ? B 1403 ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcpN[6N]a' BDG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpN6N # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose BDG 3 'PAROMOMYCIN (RING 2)' PA2 4 '1-(AMINOETHYL)AMINO-4-AMINOBUTANE' P24 5 '4-AMINO-2-HYDROXYBUTANOIC ACID' 42B 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1J7T _pdbx_initial_refinement_model.details 'PDB ENTRY 1J7T' #