HEADER OXIDOREDUCTASE 03-FEB-03 1OC1 TITLE ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL-AMINOBUTYRATE-FE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ISOPENICILLIN N SYNTHASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS; SOURCE 3 ORGANISM_TAXID: 162425; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PJB703 KEYWDS OXIDOREDUCTASE, B-LACTAM ANTIBIOTIC, OXYGENASE, PENICILLIN KEYWDS 2 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.J.LONG,I.J.CLIFTON,P.L.ROACH,J.E.BALDWIN,C.J.SCHOFIELD,P.J.RUTLEDGE REVDAT 6 13-DEC-23 1OC1 1 LINK REVDAT 5 24-OCT-18 1OC1 1 SOURCE REVDAT 4 05-JUL-17 1OC1 1 REMARK REVDAT 3 13-JUL-11 1OC1 1 VERSN REVDAT 2 24-FEB-09 1OC1 1 VERSN REVDAT 1 02-FEB-04 1OC1 0 JRNL AUTH A.J.LONG,I.J.CLIFTON,P.L.ROACH,J.E.BALDWIN,C.J.SCHOFIELD, JRNL AUTH 2 P.J.RUTLEDGE JRNL TITL STRUCTURAL STUDIES ON THE REACTION OF ISOPENICILLIN N JRNL TITL 2 SYNTHASE WITH THE SUBSTRATE ANALOGUE JRNL TITL 3 DELTA-(L-ALPHA-AMINOADIPOYL) JRNL TITL 4 -L-CYSTEINYL-D-ALPHA-AMINOBUTYRATE JRNL REF BIOCHEM.J. V. 372 687 2003 JRNL REFN ISSN 0264-6021 JRNL PMID 12622704 JRNL DOI 10.1042/BJ20021627 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.L.ROACH,I.J.CLIFTON,C.M.HENSGENS,N.SHIBATA,C.J.SCHOFIELD, REMARK 1 AUTH 2 J.HAJDU,J.E.BALDWIN REMARK 1 TITL STRUCTURE OF ISOPENICILLIN N SYNTHASE COMPLEXED WITH REMARK 1 TITL 2 SUBSTRATE AND THE MECHANISM OF PENICILLIN FORMATION REMARK 1 REF NATURE V. 387 827 1997 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 9194566 REMARK 1 DOI 10.1038/42990 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 33292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.756 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2751 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2343 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3745 ; 1.713 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5481 ; 1.201 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3090 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 563 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 520 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2673 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1518 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.125 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.337 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1647 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2659 ; 1.397 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1104 ; 2.452 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1086 ; 3.929 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8247 28.4837 22.2029 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.0724 REMARK 3 T33: 0.1253 T12: 0.0593 REMARK 3 T13: 0.0260 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.7291 L22: 5.4751 REMARK 3 L33: 1.2125 L12: -1.1849 REMARK 3 L13: -0.1784 L23: -1.1324 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0664 S13: -0.0951 REMARK 3 S21: 0.1247 S22: 0.0605 S23: 0.4853 REMARK 3 S31: -0.0409 S32: -0.3189 S33: -0.0787 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 43.8147 6.6831 14.2672 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.0474 REMARK 3 T33: 0.0789 T12: 0.0768 REMARK 3 T13: 0.0011 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.4037 L22: 3.9535 REMARK 3 L33: 2.7259 L12: -2.0769 REMARK 3 L13: 0.7141 L23: -1.0617 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 0.2171 S13: -0.1714 REMARK 3 S21: -0.1982 S22: -0.0952 S23: -0.0578 REMARK 3 S31: 0.2185 S32: 0.0039 S33: 0.0121 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4612 19.9146 7.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.1139 REMARK 3 T33: 0.0432 T12: 0.0844 REMARK 3 T13: -0.0123 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.9329 L22: 3.7870 REMARK 3 L33: 1.3289 L12: -1.2567 REMARK 3 L13: -0.0069 L23: 0.6065 REMARK 3 S TENSOR REMARK 3 S11: 0.2564 S12: 0.4214 S13: -0.0623 REMARK 3 S21: -0.5461 S22: -0.2527 S23: -0.0549 REMARK 3 S31: 0.1133 S32: -0.0030 S33: -0.0037 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8397 18.7488 23.1068 REMARK 3 T TENSOR REMARK 3 T11: 0.0722 T22: 0.0350 REMARK 3 T33: 0.0845 T12: 0.0217 REMARK 3 T13: -0.0037 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.7730 L22: 2.2694 REMARK 3 L33: 1.6446 L12: -0.4942 REMARK 3 L13: -0.0409 L23: -0.7343 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: 0.0411 S13: 0.0823 REMARK 3 S21: 0.0357 S22: -0.1804 S23: -0.1988 REMARK 3 S31: 0.0098 S32: 0.1485 S33: 0.1220 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5314 24.1722 28.9143 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.0434 REMARK 3 T33: 0.0466 T12: 0.0671 REMARK 3 T13: -0.0114 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.4976 L22: 4.7875 REMARK 3 L33: 2.8571 L12: -0.5679 REMARK 3 L13: 0.0566 L23: -2.3516 REMARK 3 S TENSOR REMARK 3 S11: -0.0896 S12: -0.1319 S13: 0.1063 REMARK 3 S21: 0.4009 S22: 0.0284 S23: 0.0901 REMARK 3 S31: -0.2513 S32: -0.1591 S33: 0.0612 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8485 29.5865 18.0894 REMARK 3 T TENSOR REMARK 3 T11: 0.2185 T22: 0.1907 REMARK 3 T33: 0.2048 T12: 0.0460 REMARK 3 T13: -0.0215 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 2.6631 L22: 4.5221 REMARK 3 L33: 1.7700 L12: 1.3502 REMARK 3 L13: 0.0214 L23: -0.9190 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0148 S13: 0.2152 REMARK 3 S21: 0.3853 S22: -0.1952 S23: -0.7488 REMARK 3 S31: -0.1348 S32: 0.5746 S33: 0.2021 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1OC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34696 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 19.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1BLZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.55267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.10533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.10533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.55267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2123 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2042 O HOH A 2122 2.04 REMARK 500 O HOH A 2169 O HOH A 2189 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 140 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 291 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 298 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 307 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -106.01 -97.27 REMARK 500 HIS A 82 54.90 -105.36 REMARK 500 LYS A 97 -48.49 -132.59 REMARK 500 LEU A 106 -169.21 -108.81 REMARK 500 THR A 123 -2.51 76.19 REMARK 500 SER A 226 165.79 -45.78 REMARK 500 ASN A 230 -28.39 -151.55 REMARK 500 ASP A 245 98.63 -162.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1333 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 92.8 REMARK 620 3 HIS A 270 NE2 89.5 91.1 REMARK 620 4 ASV A1332 S17 89.0 85.0 175.8 REMARK 620 5 HOH A2145 O 173.8 93.3 91.5 90.4 REMARK 620 6 HOH A2201 O 92.0 171.9 95.5 88.5 81.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASV A1332 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BK0 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACV-FE COMPLEX) REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACV-FE-NO REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1HB1 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ANAEROBIC ACOV REMARK 900 FE COMPLEX) REMARK 900 RELATED ID: 1HB2 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1HB3 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1HB4 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1IPS RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (MANGANESE REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1QIQ RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACMC FE COMPLEX) REMARK 900 RELATED ID: 1QJE RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (IPN - FE REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1QJF RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (MONOCYCLIC REMARK 900 SULFOXIDE - FE COMPLEX) REMARK 900 RELATED ID: 1OBN RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS DBREF 1OC1 A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET ASV A1332 24 HET FE2 A1333 1 HET SO4 A1334 5 HET SO4 A1335 5 HET SO4 A1336 5 HETNAM ASV DELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE HETNAM FE2 FE (II) ION HETNAM SO4 SULFATE ION FORMUL 2 ASV C13 H21 N3 O6 S FORMUL 3 FE2 FE 2+ FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *203(H2 O) HELIX 1 1 SER A 15 GLY A 19 5 5 HELIX 2 2 ASP A 21 ASP A 38 1 18 HELIX 3 3 ASN A 50 ILE A 65 1 16 HELIX 4 4 THR A 66 ALA A 74 1 9 HELIX 5 5 HIS A 114 ALA A 119 1 6 HELIX 6 6 GLY A 137 LEU A 164 1 28 HELIX 7 7 GLU A 168 ARG A 173 1 6 HELIX 8 8 PRO A 196 ILE A 200 5 5 HELIX 9 9 GLY A 254 THR A 261 1 8 HELIX 10 10 SER A 312 GLY A 329 1 18 SHEET 1 AA 8 LYS A 11 ASP A 13 0 SHEET 2 AA 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA 8 ILE A 220 GLN A 225 -1 O THR A 221 N ASN A 252 SHEET 5 AA 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA 8 SER A 183 TYR A 189 -1 O SER A 183 N PHE A 285 SHEET 7 AA 8 GLU A 101 TYR A 105 -1 O GLU A 101 N ARG A 188 SHEET 8 AA 8 GLY A 89 TYR A 91 -1 O GLY A 89 N CYS A 104 SHEET 1 AB 5 LYS A 201 THR A 202 0 SHEET 2 AB 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AB 5 HIS A 270 LYS A 273 -1 O HIS A 270 N HIS A 214 SHEET 4 AB 5 LEU A 231 THR A 235 -1 O GLN A 232 N ARG A 271 SHEET 5 AB 5 GLY A 238 ASP A 241 -1 O GLY A 238 N THR A 235 LINK NE2 HIS A 214 FE FE2 A1333 1555 1555 2.23 LINK OD1 ASP A 216 FE FE2 A1333 1555 1555 2.14 LINK NE2 HIS A 270 FE FE2 A1333 1555 1555 2.25 LINK S17 ASV A1332 FE FE2 A1333 1555 1555 2.41 LINK FE FE2 A1333 O HOH A2145 1555 1555 2.21 LINK FE FE2 A1333 O HOH A2201 1555 1555 2.22 CISPEP 1 ASP A 193 PRO A 194 0 5.82 SITE 1 AC1 6 HIS A 214 ASP A 216 HIS A 270 ASV A1332 SITE 2 AC1 6 HOH A2145 HOH A2201 SITE 1 AC2 4 ARG A 173 LYS A 201 THR A 202 HOH A2202 SITE 1 AC3 2 ARG A 116 ASP A 291 SITE 1 AC4 2 ARG A 27 HOH A2203 SITE 1 AC5 20 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC5 20 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC5 20 LEU A 223 LEU A 231 SER A 281 PRO A 283 SITE 4 AC5 20 PHE A 285 THR A 331 FE2 A1333 HOH A2145 SITE 5 AC5 20 HOH A2152 HOH A2199 HOH A2200 HOH A2201 CRYST1 100.976 100.976 115.658 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009903 0.005718 0.000000 0.00000 SCALE2 0.000000 0.011435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008646 0.00000