data_1OCT # _entry.id 1OCT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1OCT pdb_00001oct 10.2210/pdb1oct/pdb RCSB PDT019 ? ? WWPDB D_1000175433 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-08-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OCT _pdbx_database_status.recvd_initial_deposition_date 1994-05-09 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Klemm, J.D.' 1 'Rould, M.A.' 2 'Aurora, R.' 3 'Herr, W.' 4 'Pabo, C.O.' 5 # _citation.id primary _citation.title 'Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 77 _citation.page_first 21 _citation.page_last 32 _citation.year 1994 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8156594 _citation.pdbx_database_id_DOI '10.1016/0092-8674(94)90231-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Klemm, J.D.' 1 ? primary 'Rould, M.A.' 2 ? primary 'Aurora, R.' 3 ? primary 'Herr, W.' 4 ? primary 'Pabo, C.O.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3') ; 4657.060 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3') ; 4518.959 1 ? ? ? ? 3 polymer nat 'PROTEIN (OCT-1 POU DOMAIN)' 18014.621 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DA)(DT)(DG)(DC)(DA)(DA)(DA)(DT)(DA)(DA)(DG)(DG)' TGTATGCAAATAAGG A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DT)(DT)(DA)(DT)(DT)(DT)(DG)(DC)(DA)(DT)(DA)(DC)' ACCTTATTTGCATAC B ? 3 'polypeptide(L)' no no ;DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLS SPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINP ; ;DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLS SPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINP ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DT n 1 6 DG n 1 7 DC n 1 8 DA n 1 9 DA n 1 10 DA n 1 11 DT n 1 12 DA n 1 13 DA n 1 14 DG n 1 15 DG n 2 1 DA n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DT n 2 6 DA n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DG n 2 11 DC n 2 12 DA n 2 13 DT n 2 14 DA n 2 15 DC n 3 1 ASP n 3 2 LEU n 3 3 GLU n 3 4 GLU n 3 5 LEU n 3 6 GLU n 3 7 GLN n 3 8 PHE n 3 9 ALA n 3 10 LYS n 3 11 THR n 3 12 PHE n 3 13 LYS n 3 14 GLN n 3 15 ARG n 3 16 ARG n 3 17 ILE n 3 18 LYS n 3 19 LEU n 3 20 GLY n 3 21 PHE n 3 22 THR n 3 23 GLN n 3 24 GLY n 3 25 ASP n 3 26 VAL n 3 27 GLY n 3 28 LEU n 3 29 ALA n 3 30 MET n 3 31 GLY n 3 32 LYS n 3 33 LEU n 3 34 TYR n 3 35 GLY n 3 36 ASN n 3 37 ASP n 3 38 PHE n 3 39 SER n 3 40 GLN n 3 41 THR n 3 42 THR n 3 43 ILE n 3 44 SER n 3 45 ARG n 3 46 PHE n 3 47 GLU n 3 48 ALA n 3 49 LEU n 3 50 ASN n 3 51 LEU n 3 52 SER n 3 53 PHE n 3 54 LYS n 3 55 ASN n 3 56 MET n 3 57 CYS n 3 58 LYS n 3 59 LEU n 3 60 LYS n 3 61 PRO n 3 62 LEU n 3 63 LEU n 3 64 GLU n 3 65 LYS n 3 66 TRP n 3 67 LEU n 3 68 ASN n 3 69 ASP n 3 70 ALA n 3 71 GLU n 3 72 ASN n 3 73 LEU n 3 74 SER n 3 75 SER n 3 76 ASP n 3 77 SER n 3 78 SER n 3 79 LEU n 3 80 SER n 3 81 SER n 3 82 PRO n 3 83 SER n 3 84 ALA n 3 85 LEU n 3 86 ASN n 3 87 SER n 3 88 PRO n 3 89 GLY n 3 90 ILE n 3 91 GLU n 3 92 GLY n 3 93 LEU n 3 94 SER n 3 95 ARG n 3 96 ARG n 3 97 ARG n 3 98 LYS n 3 99 LYS n 3 100 ARG n 3 101 THR n 3 102 SER n 3 103 ILE n 3 104 GLU n 3 105 THR n 3 106 ASN n 3 107 ILE n 3 108 ARG n 3 109 VAL n 3 110 ALA n 3 111 LEU n 3 112 GLU n 3 113 LYS n 3 114 SER n 3 115 PHE n 3 116 LEU n 3 117 GLU n 3 118 ASN n 3 119 GLN n 3 120 LYS n 3 121 PRO n 3 122 THR n 3 123 SER n 3 124 GLU n 3 125 GLU n 3 126 ILE n 3 127 THR n 3 128 MET n 3 129 ILE n 3 130 ALA n 3 131 ASP n 3 132 GLN n 3 133 LEU n 3 134 ASN n 3 135 MET n 3 136 GLU n 3 137 LYS n 3 138 GLU n 3 139 VAL n 3 140 ILE n 3 141 ARG n 3 142 VAL n 3 143 TRP n 3 144 PHE n 3 145 CYS n 3 146 ASN n 3 147 ARG n 3 148 ARG n 3 149 GLN n 3 150 LYS n 3 151 GLU n 3 152 LYS n 3 153 ARG n 3 154 ILE n 3 155 ASN n 3 156 PRO n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus Homo _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 201 201 DT T A . n A 1 2 DG 2 202 202 DG G A . n A 1 3 DT 3 203 203 DT T A . n A 1 4 DA 4 204 204 DA A A . n A 1 5 DT 5 205 205 DT T A . n A 1 6 DG 6 206 206 DG G A . n A 1 7 DC 7 207 207 DC C A . n A 1 8 DA 8 208 208 DA A A . n A 1 9 DA 9 209 209 DA A A . n A 1 10 DA 10 210 210 DA A A . n A 1 11 DT 11 211 211 DT T A . n A 1 12 DA 12 212 212 DA A A . n A 1 13 DA 13 213 213 DA A A . n A 1 14 DG 14 214 214 DG G A . n A 1 15 DG 15 215 215 DG G A . n B 2 1 DA 1 216 216 DA A B . n B 2 2 DC 2 217 217 DC C B . n B 2 3 DC 3 218 218 DC C B . n B 2 4 DT 4 219 219 DT T B . n B 2 5 DT 5 220 220 DT T B . n B 2 6 DA 6 221 221 DA A B . n B 2 7 DT 7 222 222 DT T B . n B 2 8 DT 8 223 223 DT T B . n B 2 9 DT 9 224 224 DT T B . n B 2 10 DG 10 225 225 DG G B . n B 2 11 DC 11 226 226 DC C B . n B 2 12 DA 12 227 227 DA A B . n B 2 13 DT 13 228 228 DT T B . n B 2 14 DA 14 229 229 DA A B . n B 2 15 DC 15 230 230 DC C B . n C 3 1 ASP 1 5 5 ASP ASP C . n C 3 2 LEU 2 6 6 LEU LEU C . n C 3 3 GLU 3 7 7 GLU GLU C . n C 3 4 GLU 4 8 8 GLU GLU C . n C 3 5 LEU 5 9 9 LEU LEU C . n C 3 6 GLU 6 10 10 GLU GLU C . n C 3 7 GLN 7 11 11 GLN GLN C . n C 3 8 PHE 8 12 12 PHE PHE C . n C 3 9 ALA 9 13 13 ALA ALA C . n C 3 10 LYS 10 14 14 LYS LYS C . n C 3 11 THR 11 15 15 THR THR C . n C 3 12 PHE 12 16 16 PHE PHE C . n C 3 13 LYS 13 17 17 LYS LYS C . n C 3 14 GLN 14 18 18 GLN GLN C . n C 3 15 ARG 15 19 19 ARG ARG C . n C 3 16 ARG 16 20 20 ARG ARG C . n C 3 17 ILE 17 21 21 ILE ILE C . n C 3 18 LYS 18 22 22 LYS LYS C . n C 3 19 LEU 19 23 23 LEU LEU C . n C 3 20 GLY 20 24 24 GLY GLY C . n C 3 21 PHE 21 25 25 PHE PHE C . n C 3 22 THR 22 26 26 THR THR C . n C 3 23 GLN 23 27 27 GLN GLN C . n C 3 24 GLY 24 28 28 GLY GLY C . n C 3 25 ASP 25 29 29 ASP ASP C . n C 3 26 VAL 26 30 30 VAL VAL C . n C 3 27 GLY 27 31 31 GLY GLY C . n C 3 28 LEU 28 32 32 LEU LEU C . n C 3 29 ALA 29 33 33 ALA ALA C . n C 3 30 MET 30 34 34 MET MET C . n C 3 31 GLY 31 35 35 GLY GLY C . n C 3 32 LYS 32 36 36 LYS LYS C . n C 3 33 LEU 33 37 37 LEU LEU C . n C 3 34 TYR 34 38 38 TYR TYR C . n C 3 35 GLY 35 39 39 GLY GLY C . n C 3 36 ASN 36 40 40 ASN ASN C . n C 3 37 ASP 37 41 41 ASP ASP C . n C 3 38 PHE 38 42 42 PHE PHE C . n C 3 39 SER 39 43 43 SER SER C . n C 3 40 GLN 40 44 44 GLN GLN C . n C 3 41 THR 41 45 45 THR THR C . n C 3 42 THR 42 46 46 THR THR C . n C 3 43 ILE 43 47 47 ILE ILE C . n C 3 44 SER 44 48 48 SER SER C . n C 3 45 ARG 45 49 49 ARG ARG C . n C 3 46 PHE 46 50 50 PHE PHE C . n C 3 47 GLU 47 51 51 GLU GLU C . n C 3 48 ALA 48 52 52 ALA ALA C . n C 3 49 LEU 49 53 53 LEU LEU C . n C 3 50 ASN 50 54 54 ASN ASN C . n C 3 51 LEU 51 55 55 LEU LEU C . n C 3 52 SER 52 56 56 SER SER C . n C 3 53 PHE 53 57 57 PHE PHE C . n C 3 54 LYS 54 58 58 LYS LYS C . n C 3 55 ASN 55 59 59 ASN ASN C . n C 3 56 MET 56 60 60 MET MET C . n C 3 57 CYS 57 61 61 CYS CYS C . n C 3 58 LYS 58 62 62 LYS LYS C . n C 3 59 LEU 59 63 63 LEU LEU C . n C 3 60 LYS 60 64 64 LYS LYS C . n C 3 61 PRO 61 65 65 PRO PRO C . n C 3 62 LEU 62 66 66 LEU LEU C . n C 3 63 LEU 63 67 67 LEU LEU C . n C 3 64 GLU 64 68 68 GLU GLU C . n C 3 65 LYS 65 69 69 LYS LYS C . n C 3 66 TRP 66 70 70 TRP TRP C . n C 3 67 LEU 67 71 71 LEU LEU C . n C 3 68 ASN 68 72 72 ASN ASN C . n C 3 69 ASP 69 73 73 ASP ASP C . n C 3 70 ALA 70 74 74 ALA ALA C . n C 3 71 GLU 71 75 75 GLU GLU C . n C 3 72 ASN 72 77 ? ? ? C . n C 3 73 LEU 73 78 ? ? ? C . n C 3 74 SER 74 79 ? ? ? C . n C 3 75 SER 75 80 ? ? ? C . n C 3 76 ASP 76 81 ? ? ? C . n C 3 77 SER 77 82 ? ? ? C . n C 3 78 SER 78 83 ? ? ? C . n C 3 79 LEU 79 84 ? ? ? C . n C 3 80 SER 80 85 ? ? ? C . n C 3 81 SER 81 86 ? ? ? C . n C 3 82 PRO 82 87 ? ? ? C . n C 3 83 SER 83 88 ? ? ? C . n C 3 84 ALA 84 89 ? ? ? C . n C 3 85 LEU 85 90 ? ? ? C . n C 3 86 ASN 86 91 ? ? ? C . n C 3 87 SER 87 92 ? ? ? C . n C 3 88 PRO 88 93 ? ? ? C . n C 3 89 GLY 89 94 ? ? ? C . n C 3 90 ILE 90 95 ? ? ? C . n C 3 91 GLU 91 96 ? ? ? C . n C 3 92 GLY 92 97 ? ? ? C . n C 3 93 LEU 93 98 ? ? ? C . n C 3 94 SER 94 99 ? ? ? C . n C 3 95 ARG 95 100 ? ? ? C . n C 3 96 ARG 96 101 ? ? ? C . n C 3 97 ARG 97 102 102 ARG ARG C . n C 3 98 LYS 98 103 103 LYS LYS C . n C 3 99 LYS 99 104 104 LYS LYS C . n C 3 100 ARG 100 105 105 ARG ARG C . n C 3 101 THR 101 106 106 THR THR C . n C 3 102 SER 102 107 107 SER SER C . n C 3 103 ILE 103 108 108 ILE ILE C . n C 3 104 GLU 104 109 109 GLU GLU C . n C 3 105 THR 105 110 110 THR THR C . n C 3 106 ASN 106 111 111 ASN ASN C . n C 3 107 ILE 107 112 112 ILE ILE C . n C 3 108 ARG 108 113 113 ARG ARG C . n C 3 109 VAL 109 114 114 VAL VAL C . n C 3 110 ALA 110 115 115 ALA ALA C . n C 3 111 LEU 111 116 116 LEU LEU C . n C 3 112 GLU 112 117 117 GLU GLU C . n C 3 113 LYS 113 118 118 LYS LYS C . n C 3 114 SER 114 119 119 SER SER C . n C 3 115 PHE 115 120 120 PHE PHE C . n C 3 116 LEU 116 121 121 LEU LEU C . n C 3 117 GLU 117 122 122 GLU GLU C . n C 3 118 ASN 118 123 123 ASN ASN C . n C 3 119 GLN 119 124 124 GLN GLN C . n C 3 120 LYS 120 125 125 LYS LYS C . n C 3 121 PRO 121 126 126 PRO PRO C . n C 3 122 THR 122 127 127 THR THR C . n C 3 123 SER 123 128 128 SER SER C . n C 3 124 GLU 124 129 129 GLU GLU C . n C 3 125 GLU 125 130 130 GLU GLU C . n C 3 126 ILE 126 131 131 ILE ILE C . n C 3 127 THR 127 132 132 THR THR C . n C 3 128 MET 128 133 133 MET MET C . n C 3 129 ILE 129 134 134 ILE ILE C . n C 3 130 ALA 130 135 135 ALA ALA C . n C 3 131 ASP 131 136 136 ASP ASP C . n C 3 132 GLN 132 137 137 GLN GLN C . n C 3 133 LEU 133 138 138 LEU LEU C . n C 3 134 ASN 134 139 139 ASN ASN C . n C 3 135 MET 135 140 140 MET MET C . n C 3 136 GLU 136 141 141 GLU GLU C . n C 3 137 LYS 137 142 142 LYS LYS C . n C 3 138 GLU 138 143 143 GLU GLU C . n C 3 139 VAL 139 144 144 VAL VAL C . n C 3 140 ILE 140 145 145 ILE ILE C . n C 3 141 ARG 141 146 146 ARG ARG C . n C 3 142 VAL 142 147 147 VAL VAL C . n C 3 143 TRP 143 148 148 TRP TRP C . n C 3 144 PHE 144 149 149 PHE PHE C . n C 3 145 CYS 145 150 150 CYS CYS C . n C 3 146 ASN 146 151 151 ASN ASN C . n C 3 147 ARG 147 152 152 ARG ARG C . n C 3 148 ARG 148 153 153 ARG ARG C . n C 3 149 GLN 149 154 154 GLN GLN C . n C 3 150 LYS 150 155 155 LYS LYS C . n C 3 151 GLU 151 156 156 GLU GLU C . n C 3 152 LYS 152 157 157 LYS LYS C . n C 3 153 ARG 153 158 158 ARG ARG C . n C 3 154 ILE 154 159 159 ILE ILE C . n C 3 155 ASN 155 160 160 ASN ASN C . n C 3 156 PRO 156 161 161 PRO PRO C . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C LYS 22 ? CG ? C LYS 18 CG 2 1 Y 1 C LYS 22 ? CD ? C LYS 18 CD 3 1 Y 1 C LYS 22 ? CE ? C LYS 18 CE 4 1 Y 1 C LYS 22 ? NZ ? C LYS 18 NZ 5 1 Y 1 C LYS 36 ? CG ? C LYS 32 CG 6 1 Y 1 C LYS 36 ? CD ? C LYS 32 CD 7 1 Y 1 C LYS 36 ? CE ? C LYS 32 CE 8 1 Y 1 C LYS 36 ? NZ ? C LYS 32 NZ 9 1 Y 1 C LYS 58 ? CG ? C LYS 54 CG 10 1 Y 1 C LYS 58 ? CD ? C LYS 54 CD 11 1 Y 1 C LYS 58 ? CE ? C LYS 54 CE 12 1 Y 1 C LYS 58 ? NZ ? C LYS 54 NZ 13 1 Y 1 C LYS 104 ? CG ? C LYS 99 CG 14 1 Y 1 C LYS 104 ? CD ? C LYS 99 CD 15 1 Y 1 C LYS 104 ? CE ? C LYS 99 CE 16 1 Y 1 C LYS 104 ? NZ ? C LYS 99 NZ 17 1 Y 1 C LYS 118 ? CG ? C LYS 113 CG 18 1 Y 1 C LYS 118 ? CD ? C LYS 113 CD 19 1 Y 1 C LYS 118 ? CE ? C LYS 113 CE 20 1 Y 1 C LYS 118 ? NZ ? C LYS 113 NZ 21 1 Y 1 C GLN 154 ? CG ? C GLN 149 CG 22 1 Y 1 C GLN 154 ? CD ? C GLN 149 CD 23 1 Y 1 C GLN 154 ? OE1 ? C GLN 149 OE1 24 1 Y 1 C GLN 154 ? NE2 ? C GLN 149 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 TNT refinement . ? 2 # _cell.entry_id 1OCT _cell.length_a 97.500 _cell.length_b 89.800 _cell.length_c 80.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OCT _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 1OCT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.18 _exptl_crystal.density_percent_sol 61.34 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1OCT _refine.ls_number_reflns_obs 6998 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 3.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2370000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2370000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1061 _refine_hist.pdbx_number_atoms_nucleic_acid 609 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1670 _refine_hist.d_res_high 3.000 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na 0.013 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot 0.006 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na 2.500 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot 1.200 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1OCT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1OCT _struct.title 'CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING MODULES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OCT _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP PO2F1_HUMAN 3 P14859 ? ? ? 2 PDB 1OCT 1 1OCT ? ? ? 3 PDB 1OCT 2 1OCT ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OCT C 1 ? 156 ? P14859 284 ? 439 ? 5 161 2 2 1OCT A 1 ? 15 ? 1OCT 201 ? 215 ? 201 215 3 3 1OCT B 1 ? 15 ? 1OCT 216 ? 230 ? 216 230 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 S1 ASP C 1 ? GLY C 20 ? ASP C 5 GLY C 24 1 ? 20 HELX_P HELX_P2 S2 GLN C 23 ? LEU C 33 ? GLN C 27 LEU C 37 1 ? 11 HELX_P HELX_P3 S3 GLN C 40 ? ALA C 48 ? GLN C 44 ALA C 52 1 ? 9 HELX_P HELX_P4 S4 PHE C 53 ? ALA C 70 ? PHE C 57 ALA C 74 1 ? 18 HELX_P HELX_P5 H1 THR C 105 ? GLU C 117 ? THR C 110 GLU C 122 1 ? 13 HELX_P HELX_P6 H2 SER C 123 ? GLN C 132 ? SER C 128 GLN C 137 1 ? 10 HELX_P HELX_P7 H3 LYS C 137 ? ASN C 155 ? LYS C 142 ASN C 160 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 15 N3 ? ? A DG 202 B DC 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 15 O2 ? ? A DG 202 B DC 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 15 N4 ? ? A DG 202 B DC 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 14 N1 ? ? A DT 203 B DA 229 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 14 N6 ? ? A DT 203 B DA 229 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 204 B DT 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 204 B DT 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 205 B DA 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 205 B DA 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 206 B DC 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 206 B DC 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 206 B DC 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 207 B DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 207 B DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 207 B DG 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 208 B DT 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 208 B DT 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 209 B DT 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 209 B DT 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 210 B DT 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 210 B DT 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 211 B DA 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 211 B DA 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 212 B DT 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 212 B DT 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 213 B DT 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 213 B DT 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 214 B DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 214 B DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 214 B DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 215 B DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 215 B DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 215 B DC 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 202 ? ? "C3'" A DG 202 ? ? 1.376 1.419 -0.043 0.006 N 2 1 "O3'" A DA 208 ? ? "C3'" A DA 208 ? ? 1.362 1.419 -0.057 0.006 N 3 1 "O3'" A DA 209 ? ? "C3'" A DA 209 ? ? 1.361 1.419 -0.058 0.006 N 4 1 "O3'" A DA 210 ? ? "C3'" A DA 210 ? ? 1.381 1.419 -0.038 0.006 N 5 1 "O3'" B DA 216 ? ? "C3'" B DA 216 ? ? 1.373 1.419 -0.046 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DT 201 ? ? "C3'" A DT 201 ? ? "C2'" A DT 201 ? ? 97.14 102.20 -5.06 0.70 N 2 1 "O4'" A DT 201 ? ? "C1'" A DT 201 ? ? N1 A DT 201 ? ? 110.14 108.30 1.84 0.30 N 3 1 "O4'" A DG 202 ? ? "C4'" A DG 202 ? ? "C3'" A DG 202 ? ? 101.75 104.50 -2.75 0.40 N 4 1 "C4'" A DG 202 ? ? "C3'" A DG 202 ? ? "C2'" A DG 202 ? ? 109.00 103.10 5.90 0.90 N 5 1 "C3'" A DG 202 ? ? "O3'" A DG 202 ? ? P A DT 203 ? ? 111.92 119.70 -7.78 1.20 Y 6 1 P A DA 204 ? ? "O5'" A DA 204 ? ? "C5'" A DA 204 ? ? 110.82 120.90 -10.08 1.60 N 7 1 "O4'" A DA 204 ? ? "C1'" A DA 204 ? ? N9 A DA 204 ? ? 103.79 108.00 -4.21 0.70 N 8 1 C6 A DT 205 ? ? C5 A DT 205 ? ? C7 A DT 205 ? ? 119.21 122.90 -3.69 0.60 N 9 1 P A DC 207 ? ? "O5'" A DC 207 ? ? "C5'" A DC 207 ? ? 111.29 120.90 -9.61 1.60 N 10 1 "O5'" A DA 208 ? ? "C5'" A DA 208 ? ? "C4'" A DA 208 ? ? 104.07 109.40 -5.33 0.80 N 11 1 "C3'" A DA 208 ? ? "C2'" A DA 208 ? ? "C1'" A DA 208 ? ? 96.86 102.40 -5.54 0.80 N 12 1 "O4'" A DA 208 ? ? "C1'" A DA 208 ? ? "C2'" A DA 208 ? ? 99.48 105.90 -6.42 0.80 N 13 1 "O4'" A DA 209 ? ? "C1'" A DA 209 ? ? N9 A DA 209 ? ? 113.71 108.30 5.41 0.30 N 14 1 P A DA 210 ? ? "O5'" A DA 210 ? ? "C5'" A DA 210 ? ? 110.82 120.90 -10.08 1.60 N 15 1 "O4'" A DA 210 ? ? "C1'" A DA 210 ? ? N9 A DA 210 ? ? 110.27 108.30 1.97 0.30 N 16 1 "O4'" A DA 212 ? ? "C1'" A DA 212 ? ? N9 A DA 212 ? ? 103.52 108.00 -4.48 0.70 N 17 1 "O4'" A DG 214 ? ? "C1'" A DG 214 ? ? N9 A DG 214 ? ? 110.74 108.30 2.44 0.30 N 18 1 "O4'" B DA 216 ? ? "C1'" B DA 216 ? ? "C2'" B DA 216 ? ? 111.76 106.80 4.96 0.50 N 19 1 "C3'" B DA 216 ? ? "O3'" B DA 216 ? ? P B DC 217 ? ? 110.96 119.70 -8.74 1.20 Y 20 1 "O3'" B DA 216 ? ? P B DC 217 ? ? "O5'" B DC 217 ? ? 91.98 104.00 -12.02 1.90 Y 21 1 "O4'" B DC 217 ? ? "C4'" B DC 217 ? ? "C3'" B DC 217 ? ? 97.60 104.50 -6.90 0.40 N 22 1 "C5'" B DC 217 ? ? "C4'" B DC 217 ? ? "O4'" B DC 217 ? ? 117.72 109.80 7.92 1.10 N 23 1 "C1'" B DC 217 ? ? "O4'" B DC 217 ? ? "C4'" B DC 217 ? ? 100.78 110.10 -9.32 1.00 N 24 1 "O4'" B DC 217 ? ? "C1'" B DC 217 ? ? N1 B DC 217 ? ? 113.68 108.30 5.38 0.30 N 25 1 P B DC 218 ? ? "O5'" B DC 218 ? ? "C5'" B DC 218 ? ? 110.75 120.90 -10.15 1.60 N 26 1 P B DT 219 ? ? "O5'" B DT 219 ? ? "C5'" B DT 219 ? ? 107.98 120.90 -12.92 1.60 N 27 1 "O5'" B DT 220 ? ? "C5'" B DT 220 ? ? "C4'" B DT 220 ? ? 104.38 109.40 -5.02 0.80 N 28 1 N3 B DT 222 ? ? C2 B DT 222 ? ? O2 B DT 222 ? ? 118.04 122.30 -4.26 0.60 N 29 1 "O4'" B DT 223 ? ? "C1'" B DT 223 ? ? N1 B DT 223 ? ? 102.83 108.00 -5.17 0.70 N 30 1 "O5'" B DT 224 ? ? "C5'" B DT 224 ? ? "C4'" B DT 224 ? ? 103.73 109.40 -5.67 0.80 N 31 1 "C1'" B DT 224 ? ? "O4'" B DT 224 ? ? "C4'" B DT 224 ? ? 102.78 110.10 -7.32 1.00 N 32 1 N3 B DT 224 ? ? C4 B DT 224 ? ? O4 B DT 224 ? ? 123.63 119.90 3.73 0.60 N 33 1 C4 B DT 224 ? ? C5 B DT 224 ? ? C7 B DT 224 ? ? 115.19 119.00 -3.81 0.60 N 34 1 P B DG 225 ? ? "O5'" B DG 225 ? ? "C5'" B DG 225 ? ? 109.46 120.90 -11.44 1.60 N 35 1 "O4'" B DG 225 ? ? "C1'" B DG 225 ? ? N9 B DG 225 ? ? 103.58 108.00 -4.42 0.70 N 36 1 "O4'" B DA 227 ? ? "C1'" B DA 227 ? ? N9 B DA 227 ? ? 102.62 108.00 -5.38 0.70 N 37 1 "C3'" B DT 228 ? ? "C2'" B DT 228 ? ? "C1'" B DT 228 ? ? 96.84 102.40 -5.56 0.80 N 38 1 "O4'" B DT 228 ? ? "C1'" B DT 228 ? ? N1 B DT 228 ? ? 111.05 108.30 2.75 0.30 N 39 1 "C3'" B DA 229 ? ? "C2'" B DA 229 ? ? "C1'" B DA 229 ? ? 97.37 102.40 -5.03 0.80 N 40 1 "O4'" B DA 229 ? ? "C1'" B DA 229 ? ? N9 B DA 229 ? ? 110.32 108.30 2.02 0.30 N 41 1 "O4'" B DC 230 ? ? "C4'" B DC 230 ? ? "C3'" B DC 230 ? ? 101.19 104.50 -3.31 0.40 N 42 1 "C3'" B DC 230 ? ? "C2'" B DC 230 ? ? "C1'" B DC 230 ? ? 96.59 102.40 -5.81 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU C 6 ? ? -45.21 -84.59 2 1 LEU C 23 ? ? -62.90 6.40 3 1 LYS C 36 ? ? -81.15 37.90 4 1 LEU C 37 ? ? -146.09 -19.44 5 1 TYR C 38 ? ? -148.13 -2.64 6 1 ASN C 54 ? ? -95.82 51.93 7 1 ASN C 139 ? ? 51.81 -3.03 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C ASN 77 ? C ASN 72 2 1 Y 1 C LEU 78 ? C LEU 73 3 1 Y 1 C SER 79 ? C SER 74 4 1 Y 1 C SER 80 ? C SER 75 5 1 Y 1 C ASP 81 ? C ASP 76 6 1 Y 1 C SER 82 ? C SER 77 7 1 Y 1 C SER 83 ? C SER 78 8 1 Y 1 C LEU 84 ? C LEU 79 9 1 Y 1 C SER 85 ? C SER 80 10 1 Y 1 C SER 86 ? C SER 81 11 1 Y 1 C PRO 87 ? C PRO 82 12 1 Y 1 C SER 88 ? C SER 83 13 1 Y 1 C ALA 89 ? C ALA 84 14 1 Y 1 C LEU 90 ? C LEU 85 15 1 Y 1 C ASN 91 ? C ASN 86 16 1 Y 1 C SER 92 ? C SER 87 17 1 Y 1 C PRO 93 ? C PRO 88 18 1 Y 1 C GLY 94 ? C GLY 89 19 1 Y 1 C ILE 95 ? C ILE 90 20 1 Y 1 C GLU 96 ? C GLU 91 21 1 Y 1 C GLY 97 ? C GLY 92 22 1 Y 1 C LEU 98 ? C LEU 93 23 1 Y 1 C SER 99 ? C SER 94 24 1 Y 1 C ARG 100 ? C ARG 95 25 1 Y 1 C ARG 101 ? C ARG 96 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 ILE N N N N 280 ILE CA C N S 281 ILE C C N N 282 ILE O O N N 283 ILE CB C N S 284 ILE CG1 C N N 285 ILE CG2 C N N 286 ILE CD1 C N N 287 ILE OXT O N N 288 ILE H H N N 289 ILE H2 H N N 290 ILE HA H N N 291 ILE HB H N N 292 ILE HG12 H N N 293 ILE HG13 H N N 294 ILE HG21 H N N 295 ILE HG22 H N N 296 ILE HG23 H N N 297 ILE HD11 H N N 298 ILE HD12 H N N 299 ILE HD13 H N N 300 ILE HXT H N N 301 LEU N N N N 302 LEU CA C N S 303 LEU C C N N 304 LEU O O N N 305 LEU CB C N N 306 LEU CG C N N 307 LEU CD1 C N N 308 LEU CD2 C N N 309 LEU OXT O N N 310 LEU H H N N 311 LEU H2 H N N 312 LEU HA H N N 313 LEU HB2 H N N 314 LEU HB3 H N N 315 LEU HG H N N 316 LEU HD11 H N N 317 LEU HD12 H N N 318 LEU HD13 H N N 319 LEU HD21 H N N 320 LEU HD22 H N N 321 LEU HD23 H N N 322 LEU HXT H N N 323 LYS N N N N 324 LYS CA C N S 325 LYS C C N N 326 LYS O O N N 327 LYS CB C N N 328 LYS CG C N N 329 LYS CD C N N 330 LYS CE C N N 331 LYS NZ N N N 332 LYS OXT O N N 333 LYS H H N N 334 LYS H2 H N N 335 LYS HA H N N 336 LYS HB2 H N N 337 LYS HB3 H N N 338 LYS HG2 H N N 339 LYS HG3 H N N 340 LYS HD2 H N N 341 LYS HD3 H N N 342 LYS HE2 H N N 343 LYS HE3 H N N 344 LYS HZ1 H N N 345 LYS HZ2 H N N 346 LYS HZ3 H N N 347 LYS HXT H N N 348 MET N N N N 349 MET CA C N S 350 MET C C N N 351 MET O O N N 352 MET CB C N N 353 MET CG C N N 354 MET SD S N N 355 MET CE C N N 356 MET OXT O N N 357 MET H H N N 358 MET H2 H N N 359 MET HA H N N 360 MET HB2 H N N 361 MET HB3 H N N 362 MET HG2 H N N 363 MET HG3 H N N 364 MET HE1 H N N 365 MET HE2 H N N 366 MET HE3 H N N 367 MET HXT H N N 368 PHE N N N N 369 PHE CA C N S 370 PHE C C N N 371 PHE O O N N 372 PHE CB C N N 373 PHE CG C Y N 374 PHE CD1 C Y N 375 PHE CD2 C Y N 376 PHE CE1 C Y N 377 PHE CE2 C Y N 378 PHE CZ C Y N 379 PHE OXT O N N 380 PHE H H N N 381 PHE H2 H N N 382 PHE HA H N N 383 PHE HB2 H N N 384 PHE HB3 H N N 385 PHE HD1 H N N 386 PHE HD2 H N N 387 PHE HE1 H N N 388 PHE HE2 H N N 389 PHE HZ H N N 390 PHE HXT H N N 391 PRO N N N N 392 PRO CA C N S 393 PRO C C N N 394 PRO O O N N 395 PRO CB C N N 396 PRO CG C N N 397 PRO CD C N N 398 PRO OXT O N N 399 PRO H H N N 400 PRO HA H N N 401 PRO HB2 H N N 402 PRO HB3 H N N 403 PRO HG2 H N N 404 PRO HG3 H N N 405 PRO HD2 H N N 406 PRO HD3 H N N 407 PRO HXT H N N 408 SER N N N N 409 SER CA C N S 410 SER C C N N 411 SER O O N N 412 SER CB C N N 413 SER OG O N N 414 SER OXT O N N 415 SER H H N N 416 SER H2 H N N 417 SER HA H N N 418 SER HB2 H N N 419 SER HB3 H N N 420 SER HG H N N 421 SER HXT H N N 422 THR N N N N 423 THR CA C N S 424 THR C C N N 425 THR O O N N 426 THR CB C N R 427 THR OG1 O N N 428 THR CG2 C N N 429 THR OXT O N N 430 THR H H N N 431 THR H2 H N N 432 THR HA H N N 433 THR HB H N N 434 THR HG1 H N N 435 THR HG21 H N N 436 THR HG22 H N N 437 THR HG23 H N N 438 THR HXT H N N 439 TRP N N N N 440 TRP CA C N S 441 TRP C C N N 442 TRP O O N N 443 TRP CB C N N 444 TRP CG C Y N 445 TRP CD1 C Y N 446 TRP CD2 C Y N 447 TRP NE1 N Y N 448 TRP CE2 C Y N 449 TRP CE3 C Y N 450 TRP CZ2 C Y N 451 TRP CZ3 C Y N 452 TRP CH2 C Y N 453 TRP OXT O N N 454 TRP H H N N 455 TRP H2 H N N 456 TRP HA H N N 457 TRP HB2 H N N 458 TRP HB3 H N N 459 TRP HD1 H N N 460 TRP HE1 H N N 461 TRP HE3 H N N 462 TRP HZ2 H N N 463 TRP HZ3 H N N 464 TRP HH2 H N N 465 TRP HXT H N N 466 TYR N N N N 467 TYR CA C N S 468 TYR C C N N 469 TYR O O N N 470 TYR CB C N N 471 TYR CG C Y N 472 TYR CD1 C Y N 473 TYR CD2 C Y N 474 TYR CE1 C Y N 475 TYR CE2 C Y N 476 TYR CZ C Y N 477 TYR OH O N N 478 TYR OXT O N N 479 TYR H H N N 480 TYR H2 H N N 481 TYR HA H N N 482 TYR HB2 H N N 483 TYR HB3 H N N 484 TYR HD1 H N N 485 TYR HD2 H N N 486 TYR HE1 H N N 487 TYR HE2 H N N 488 TYR HH H N N 489 TYR HXT H N N 490 VAL N N N N 491 VAL CA C N S 492 VAL C C N N 493 VAL O O N N 494 VAL CB C N N 495 VAL CG1 C N N 496 VAL CG2 C N N 497 VAL OXT O N N 498 VAL H H N N 499 VAL H2 H N N 500 VAL HA H N N 501 VAL HB H N N 502 VAL HG11 H N N 503 VAL HG12 H N N 504 VAL HG13 H N N 505 VAL HG21 H N N 506 VAL HG22 H N N 507 VAL HG23 H N N 508 VAL HXT H N N 509 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 ILE N CA sing N N 278 ILE N H sing N N 279 ILE N H2 sing N N 280 ILE CA C sing N N 281 ILE CA CB sing N N 282 ILE CA HA sing N N 283 ILE C O doub N N 284 ILE C OXT sing N N 285 ILE CB CG1 sing N N 286 ILE CB CG2 sing N N 287 ILE CB HB sing N N 288 ILE CG1 CD1 sing N N 289 ILE CG1 HG12 sing N N 290 ILE CG1 HG13 sing N N 291 ILE CG2 HG21 sing N N 292 ILE CG2 HG22 sing N N 293 ILE CG2 HG23 sing N N 294 ILE CD1 HD11 sing N N 295 ILE CD1 HD12 sing N N 296 ILE CD1 HD13 sing N N 297 ILE OXT HXT sing N N 298 LEU N CA sing N N 299 LEU N H sing N N 300 LEU N H2 sing N N 301 LEU CA C sing N N 302 LEU CA CB sing N N 303 LEU CA HA sing N N 304 LEU C O doub N N 305 LEU C OXT sing N N 306 LEU CB CG sing N N 307 LEU CB HB2 sing N N 308 LEU CB HB3 sing N N 309 LEU CG CD1 sing N N 310 LEU CG CD2 sing N N 311 LEU CG HG sing N N 312 LEU CD1 HD11 sing N N 313 LEU CD1 HD12 sing N N 314 LEU CD1 HD13 sing N N 315 LEU CD2 HD21 sing N N 316 LEU CD2 HD22 sing N N 317 LEU CD2 HD23 sing N N 318 LEU OXT HXT sing N N 319 LYS N CA sing N N 320 LYS N H sing N N 321 LYS N H2 sing N N 322 LYS CA C sing N N 323 LYS CA CB sing N N 324 LYS CA HA sing N N 325 LYS C O doub N N 326 LYS C OXT sing N N 327 LYS CB CG sing N N 328 LYS CB HB2 sing N N 329 LYS CB HB3 sing N N 330 LYS CG CD sing N N 331 LYS CG HG2 sing N N 332 LYS CG HG3 sing N N 333 LYS CD CE sing N N 334 LYS CD HD2 sing N N 335 LYS CD HD3 sing N N 336 LYS CE NZ sing N N 337 LYS CE HE2 sing N N 338 LYS CE HE3 sing N N 339 LYS NZ HZ1 sing N N 340 LYS NZ HZ2 sing N N 341 LYS NZ HZ3 sing N N 342 LYS OXT HXT sing N N 343 MET N CA sing N N 344 MET N H sing N N 345 MET N H2 sing N N 346 MET CA C sing N N 347 MET CA CB sing N N 348 MET CA HA sing N N 349 MET C O doub N N 350 MET C OXT sing N N 351 MET CB CG sing N N 352 MET CB HB2 sing N N 353 MET CB HB3 sing N N 354 MET CG SD sing N N 355 MET CG HG2 sing N N 356 MET CG HG3 sing N N 357 MET SD CE sing N N 358 MET CE HE1 sing N N 359 MET CE HE2 sing N N 360 MET CE HE3 sing N N 361 MET OXT HXT sing N N 362 PHE N CA sing N N 363 PHE N H sing N N 364 PHE N H2 sing N N 365 PHE CA C sing N N 366 PHE CA CB sing N N 367 PHE CA HA sing N N 368 PHE C O doub N N 369 PHE C OXT sing N N 370 PHE CB CG sing N N 371 PHE CB HB2 sing N N 372 PHE CB HB3 sing N N 373 PHE CG CD1 doub Y N 374 PHE CG CD2 sing Y N 375 PHE CD1 CE1 sing Y N 376 PHE CD1 HD1 sing N N 377 PHE CD2 CE2 doub Y N 378 PHE CD2 HD2 sing N N 379 PHE CE1 CZ doub Y N 380 PHE CE1 HE1 sing N N 381 PHE CE2 CZ sing Y N 382 PHE CE2 HE2 sing N N 383 PHE CZ HZ sing N N 384 PHE OXT HXT sing N N 385 PRO N CA sing N N 386 PRO N CD sing N N 387 PRO N H sing N N 388 PRO CA C sing N N 389 PRO CA CB sing N N 390 PRO CA HA sing N N 391 PRO C O doub N N 392 PRO C OXT sing N N 393 PRO CB CG sing N N 394 PRO CB HB2 sing N N 395 PRO CB HB3 sing N N 396 PRO CG CD sing N N 397 PRO CG HG2 sing N N 398 PRO CG HG3 sing N N 399 PRO CD HD2 sing N N 400 PRO CD HD3 sing N N 401 PRO OXT HXT sing N N 402 SER N CA sing N N 403 SER N H sing N N 404 SER N H2 sing N N 405 SER CA C sing N N 406 SER CA CB sing N N 407 SER CA HA sing N N 408 SER C O doub N N 409 SER C OXT sing N N 410 SER CB OG sing N N 411 SER CB HB2 sing N N 412 SER CB HB3 sing N N 413 SER OG HG sing N N 414 SER OXT HXT sing N N 415 THR N CA sing N N 416 THR N H sing N N 417 THR N H2 sing N N 418 THR CA C sing N N 419 THR CA CB sing N N 420 THR CA HA sing N N 421 THR C O doub N N 422 THR C OXT sing N N 423 THR CB OG1 sing N N 424 THR CB CG2 sing N N 425 THR CB HB sing N N 426 THR OG1 HG1 sing N N 427 THR CG2 HG21 sing N N 428 THR CG2 HG22 sing N N 429 THR CG2 HG23 sing N N 430 THR OXT HXT sing N N 431 TRP N CA sing N N 432 TRP N H sing N N 433 TRP N H2 sing N N 434 TRP CA C sing N N 435 TRP CA CB sing N N 436 TRP CA HA sing N N 437 TRP C O doub N N 438 TRP C OXT sing N N 439 TRP CB CG sing N N 440 TRP CB HB2 sing N N 441 TRP CB HB3 sing N N 442 TRP CG CD1 doub Y N 443 TRP CG CD2 sing Y N 444 TRP CD1 NE1 sing Y N 445 TRP CD1 HD1 sing N N 446 TRP CD2 CE2 doub Y N 447 TRP CD2 CE3 sing Y N 448 TRP NE1 CE2 sing Y N 449 TRP NE1 HE1 sing N N 450 TRP CE2 CZ2 sing Y N 451 TRP CE3 CZ3 doub Y N 452 TRP CE3 HE3 sing N N 453 TRP CZ2 CH2 doub Y N 454 TRP CZ2 HZ2 sing N N 455 TRP CZ3 CH2 sing Y N 456 TRP CZ3 HZ3 sing N N 457 TRP CH2 HH2 sing N N 458 TRP OXT HXT sing N N 459 TYR N CA sing N N 460 TYR N H sing N N 461 TYR N H2 sing N N 462 TYR CA C sing N N 463 TYR CA CB sing N N 464 TYR CA HA sing N N 465 TYR C O doub N N 466 TYR C OXT sing N N 467 TYR CB CG sing N N 468 TYR CB HB2 sing N N 469 TYR CB HB3 sing N N 470 TYR CG CD1 doub Y N 471 TYR CG CD2 sing Y N 472 TYR CD1 CE1 sing Y N 473 TYR CD1 HD1 sing N N 474 TYR CD2 CE2 doub Y N 475 TYR CD2 HD2 sing N N 476 TYR CE1 CZ doub Y N 477 TYR CE1 HE1 sing N N 478 TYR CE2 CZ sing Y N 479 TYR CE2 HE2 sing N N 480 TYR CZ OH sing N N 481 TYR OH HH sing N N 482 TYR OXT HXT sing N N 483 VAL N CA sing N N 484 VAL N H sing N N 485 VAL N H2 sing N N 486 VAL CA C sing N N 487 VAL CA CB sing N N 488 VAL CA HA sing N N 489 VAL C O doub N N 490 VAL C OXT sing N N 491 VAL CB CG1 sing N N 492 VAL CB CG2 sing N N 493 VAL CB HB sing N N 494 VAL CG1 HG11 sing N N 495 VAL CG1 HG12 sing N N 496 VAL CG1 HG13 sing N N 497 VAL CG2 HG21 sing N N 498 VAL CG2 HG22 sing N N 499 VAL CG2 HG23 sing N N 500 VAL OXT HXT sing N N 501 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1OCT 'double helix' 1OCT 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 15 1_555 -0.052 0.062 0.496 -3.674 -12.798 -0.228 1 A_DG202:DC230_B A 202 ? B 230 ? 19 1 1 A DT 3 1_555 B DA 14 1_555 -0.433 0.200 0.495 -7.098 -10.804 -8.459 2 A_DT203:DA229_B A 203 ? B 229 ? 20 1 1 A DA 4 1_555 B DT 13 1_555 -0.013 -0.159 -0.029 -6.441 -8.256 1.875 3 A_DA204:DT228_B A 204 ? B 228 ? 20 1 1 A DT 5 1_555 B DA 12 1_555 0.433 -0.325 0.363 -2.533 2.562 -1.555 4 A_DT205:DA227_B A 205 ? B 227 ? 20 1 1 A DG 6 1_555 B DC 11 1_555 0.302 -0.280 0.172 0.253 -16.199 -6.927 5 A_DG206:DC226_B A 206 ? B 226 ? 19 1 1 A DC 7 1_555 B DG 10 1_555 0.032 -0.035 -0.668 12.982 -9.939 2.659 6 A_DC207:DG225_B A 207 ? B 225 ? 19 1 1 A DA 8 1_555 B DT 9 1_555 0.756 -0.095 0.423 15.964 -7.465 4.176 7 A_DA208:DT224_B A 208 ? B 224 ? 20 1 1 A DA 9 1_555 B DT 8 1_555 0.524 -0.115 0.148 0.783 -25.937 6.985 8 A_DA209:DT223_B A 209 ? B 223 ? 20 1 1 A DA 10 1_555 B DT 7 1_555 -0.571 -0.076 0.295 -6.644 -12.936 4.911 9 A_DA210:DT222_B A 210 ? B 222 ? 20 1 1 A DT 11 1_555 B DA 6 1_555 0.181 -0.031 0.318 -16.126 -19.463 5.720 10 A_DT211:DA221_B A 211 ? B 221 ? 20 1 1 A DA 12 1_555 B DT 5 1_555 0.342 -0.170 -0.003 1.815 0.206 3.280 11 A_DA212:DT220_B A 212 ? B 220 ? 20 1 1 A DA 13 1_555 B DT 4 1_555 1.036 -0.035 0.058 2.395 -5.364 -3.185 12 A_DA213:DT219_B A 213 ? B 219 ? 20 1 1 A DG 14 1_555 B DC 3 1_555 -0.042 -0.086 0.424 2.968 -11.162 3.886 13 A_DG214:DC218_B A 214 ? B 218 ? 19 1 1 A DG 15 1_555 B DC 2 1_555 -0.127 -0.307 -0.062 -1.539 -5.980 -3.588 14 A_DG215:DC217_B A 215 ? B 217 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 15 1_555 A DT 3 1_555 B DA 14 1_555 -0.226 -0.898 3.469 -0.790 0.336 34.201 -1.583 0.252 3.465 0.572 1.343 34.212 1 AA_DG202DT203:DA229DC230_BB A 202 ? B 230 ? A 203 ? B 229 ? 1 A DT 3 1_555 B DA 14 1_555 A DA 4 1_555 B DT 13 1_555 0.457 0.423 3.420 4.513 -2.757 41.924 0.883 -0.149 3.416 -3.834 -6.277 42.242 2 AA_DT203DA204:DT228DA229_BB A 203 ? B 229 ? A 204 ? B 228 ? 1 A DA 4 1_555 B DT 13 1_555 A DT 5 1_555 B DA 12 1_555 -0.232 -0.582 3.412 -1.468 6.943 26.500 -2.983 0.119 3.168 14.811 3.132 27.417 3 AA_DA204DT205:DA227DT228_BB A 204 ? B 228 ? A 205 ? B 227 ? 1 A DT 5 1_555 B DA 12 1_555 A DG 6 1_555 B DC 11 1_555 -1.179 0.510 3.211 -2.047 8.494 37.271 -0.300 1.540 3.302 13.071 3.150 38.246 4 AA_DT205DG206:DC226DA227_BB A 205 ? B 227 ? A 206 ? B 226 ? 1 A DG 6 1_555 B DC 11 1_555 A DC 7 1_555 B DG 10 1_555 1.079 0.467 3.171 11.415 -9.576 36.373 1.845 -0.237 3.143 -14.609 -17.416 39.211 5 AA_DG206DC207:DG225DC226_BB A 206 ? B 226 ? A 207 ? B 225 ? 1 A DC 7 1_555 B DG 10 1_555 A DA 8 1_555 B DT 9 1_555 0.875 0.355 3.380 -4.522 11.748 36.371 -0.979 -1.915 3.212 18.165 6.991 38.418 6 AA_DC207DA208:DT224DG225_BB A 207 ? B 225 ? A 208 ? B 224 ? 1 A DA 8 1_555 B DT 9 1_555 A DA 9 1_555 B DT 8 1_555 -0.985 0.227 3.812 -1.106 -4.891 38.386 1.042 1.328 3.782 -7.400 1.674 38.700 7 AA_DA208DA209:DT223DT224_BB A 208 ? B 224 ? A 209 ? B 223 ? 1 A DA 9 1_555 B DT 8 1_555 A DA 10 1_555 B DT 7 1_555 0.413 -0.277 3.408 -3.917 -3.668 32.919 0.151 -1.397 3.348 -6.419 6.856 33.341 8 AA_DA209DA210:DT222DT223_BB A 209 ? B 223 ? A 210 ? B 222 ? 1 A DA 10 1_555 B DT 7 1_555 A DT 11 1_555 B DA 6 1_555 -0.465 -0.529 3.729 0.073 -0.283 35.001 -0.832 0.786 3.732 -0.471 -0.122 35.003 9 AA_DA210DT211:DA221DT222_BB A 210 ? B 222 ? A 211 ? B 221 ? 1 A DT 11 1_555 B DA 6 1_555 A DA 12 1_555 B DT 5 1_555 -0.961 0.590 2.806 -5.272 3.313 39.523 0.526 0.871 2.943 4.862 7.738 39.991 10 AA_DT211DA212:DT220DA221_BB A 211 ? B 221 ? A 212 ? B 220 ? 1 A DA 12 1_555 B DT 5 1_555 A DA 13 1_555 B DT 4 1_555 -0.578 -0.183 3.169 -0.508 6.414 33.250 -1.313 0.914 3.089 11.080 0.878 33.850 11 AA_DA212DA213:DT219DT220_BB A 212 ? B 220 ? A 213 ? B 219 ? 1 A DA 13 1_555 B DT 4 1_555 A DG 14 1_555 B DC 3 1_555 0.490 -0.437 3.479 -5.071 8.771 29.454 -2.550 -1.917 3.099 16.643 9.622 31.111 12 AA_DA213DG214:DC218DT219_BB A 213 ? B 219 ? A 214 ? B 218 ? 1 A DG 14 1_555 B DC 3 1_555 A DG 15 1_555 B DC 2 1_555 0.136 -0.535 3.460 4.048 -5.353 35.617 -0.055 0.392 3.495 -8.656 -6.547 36.224 13 AA_DG214DG215:DC217DC218_BB A 214 ? B 218 ? A 215 ? B 217 ? # _atom_sites.entry_id 1OCT _atom_sites.fract_transf_matrix[1][1] 0.010256 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011136 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012500 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_