data_1ODH # _entry.id 1ODH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ODH PDBE EBI-12205 WWPDB D_1290012205 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ODH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-02-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cohen, S.X.' 1 'Muller, C.W.' 2 # _citation.id primary _citation.title 'Crystal Structure of the Gcm Domain-DNA Complex: A DNA-Binding Domain with a Novel Fold and Mode of Target Site Recognition' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 22 _citation.page_first 1835 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12682016 _citation.pdbx_database_id_DOI 10.1093/EMBOJ/CDG182 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cohen, S.X.' 1 primary 'Moulin, M.' 2 primary 'Hashemolhosseini, S.' 3 primary 'Kilian, K.' 4 primary 'Wegner, M.' 5 primary 'Muller, C.W.' 6 # _cell.entry_id 1ODH _cell.length_a 41.810 _cell.length_b 52.910 _cell.length_c 62.970 _cell.angle_alpha 90.00 _cell.angle_beta 103.24 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ODH _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man MGCM1 20463.223 1 ? ? 'GCM DOMAIN, RESIDUES 1-174' 'ZN-CONTAINING DNA-BINDING DOMAIN' 2 polymer syn ;5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3' ; 4032.622 1 ? ? ? 'DNA TARGET SITE OF THE GCM DOMAIN' 3 polymer syn ;5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3' ; 3912.550 1 ? ? ? 'DNA TARGET SITE OF THE GCM DOMAIN' 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 5 water nat water 18.015 4 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'MURINE GCMA (GLIA CELL MISSING) TRANSCRIPTION FACTOR GCM1' 2 'DNA OLIGONUCLEOTIDE' 3 'DNA OLIGONUCLEOTIDE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MELDDFDPEDKEILSWDINDVKLPQNVKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVV VCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETK LEAEARRAMKKVHM ; ;MELDDFDPEDKEILSWDINDVKLPQNVKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVV VCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETK LEAEARRAMKKVHM ; A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DT)(DG)(DC)(DG)(DG)(DG)(DT)(DG)(DC)(DA)' CGATGCGGGTGCA C ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DC)(DA)(DC)(DC)(DC)(DG)(DC)(DA)(DT)(DC)(DG)' TGCACCCGCATCG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LEU n 1 4 ASP n 1 5 ASP n 1 6 PHE n 1 7 ASP n 1 8 PRO n 1 9 GLU n 1 10 ASP n 1 11 LYS n 1 12 GLU n 1 13 ILE n 1 14 LEU n 1 15 SER n 1 16 TRP n 1 17 ASP n 1 18 ILE n 1 19 ASN n 1 20 ASP n 1 21 VAL n 1 22 LYS n 1 23 LEU n 1 24 PRO n 1 25 GLN n 1 26 ASN n 1 27 VAL n 1 28 LYS n 1 29 THR n 1 30 THR n 1 31 ASP n 1 32 TRP n 1 33 PHE n 1 34 GLN n 1 35 GLU n 1 36 TRP n 1 37 PRO n 1 38 ASP n 1 39 SER n 1 40 TYR n 1 41 VAL n 1 42 LYS n 1 43 HIS n 1 44 ILE n 1 45 TYR n 1 46 SER n 1 47 SER n 1 48 ASP n 1 49 ASP n 1 50 ARG n 1 51 ASN n 1 52 ALA n 1 53 GLN n 1 54 ARG n 1 55 HIS n 1 56 LEU n 1 57 SER n 1 58 SER n 1 59 TRP n 1 60 ALA n 1 61 MET n 1 62 ARG n 1 63 ASN n 1 64 THR n 1 65 ASN n 1 66 ASN n 1 67 HIS n 1 68 ASN n 1 69 SER n 1 70 ARG n 1 71 ILE n 1 72 LEU n 1 73 LYS n 1 74 LYS n 1 75 SER n 1 76 CYS n 1 77 LEU n 1 78 GLY n 1 79 VAL n 1 80 VAL n 1 81 VAL n 1 82 CYS n 1 83 SER n 1 84 ARG n 1 85 ASP n 1 86 CYS n 1 87 SER n 1 88 THR n 1 89 GLU n 1 90 GLU n 1 91 GLY n 1 92 ARG n 1 93 LYS n 1 94 ILE n 1 95 TYR n 1 96 LEU n 1 97 ARG n 1 98 PRO n 1 99 ALA n 1 100 ILE n 1 101 CYS n 1 102 ASP n 1 103 LYS n 1 104 ALA n 1 105 ARG n 1 106 GLN n 1 107 LYS n 1 108 GLN n 1 109 GLN n 1 110 ARG n 1 111 LYS n 1 112 SER n 1 113 CYS n 1 114 PRO n 1 115 ASN n 1 116 CYS n 1 117 ASN n 1 118 GLY n 1 119 PRO n 1 120 LEU n 1 121 LYS n 1 122 LEU n 1 123 ILE n 1 124 PRO n 1 125 CYS n 1 126 ARG n 1 127 GLY n 1 128 HIS n 1 129 GLY n 1 130 GLY n 1 131 PHE n 1 132 PRO n 1 133 VAL n 1 134 THR n 1 135 ASN n 1 136 PHE n 1 137 TRP n 1 138 ARG n 1 139 HIS n 1 140 ASP n 1 141 GLY n 1 142 ARG n 1 143 PHE n 1 144 ILE n 1 145 PHE n 1 146 PHE n 1 147 GLN n 1 148 SER n 1 149 LYS n 1 150 GLY n 1 151 GLU n 1 152 HIS n 1 153 ASP n 1 154 HIS n 1 155 PRO n 1 156 ARG n 1 157 PRO n 1 158 GLU n 1 159 THR n 1 160 LYS n 1 161 LEU n 1 162 GLU n 1 163 ALA n 1 164 GLU n 1 165 ALA n 1 166 ARG n 1 167 ARG n 1 168 ALA n 1 169 MET n 1 170 LYS n 1 171 LYS n 1 172 VAL n 1 173 HIS n 1 174 MET n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DG n 2 9 DG n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DA n 3 1 DT n 3 2 DG n 3 3 DC n 3 4 DA n 3 5 DC n 3 6 DC n 3 7 DC n 3 8 DG n 3 9 DC n 3 10 DA n 3 11 DT n 3 12 DC n 3 13 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name MOUSE _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP P70348 1 ? ? P70348 ? 2 PDB 1ODH 2 ? ? 1ODH ? 3 PDB 1ODH 3 ? ? 1ODH ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ODH A 1 ? 174 ? P70348 1 ? 174 ? 1 174 2 2 1ODH C 1 ? 13 ? 1ODH 1001 ? 1013 ? 1001 1013 3 3 1ODH D 1 ? 13 ? 1ODH 1014 ? 1026 ? 1014 1026 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1ODH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.46 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 6.00' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-11-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.931 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1ODH _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.850 _reflns.number_obs 18243 _reflns.number_all ? _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs 0.04900 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.0000 _reflns.B_iso_Wilson_estimate 133.3 _reflns.pdbx_redundancy 2.900 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.85 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.28100 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.000 _reflns_shell.pdbx_redundancy 2.40 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1ODH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6230 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 462777.10 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.35 _refine.ls_d_res_high 2.85 _refine.ls_percent_reflns_obs 97.8 _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.219 _refine.ls_R_factor_R_free 0.281 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.3 _refine.ls_number_reflns_R_free 516 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 55.4 _refine.aniso_B[1][1] -18.29 _refine.aniso_B[2][2] 23.39 _refine.aniso_B[3][3] -5.10 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 6.80 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.315059 _refine.solvent_model_param_bsol 38.7922 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'N-TERMINAL RESIDUES 1-13 AND C- TERMINAL RESIDUES 172-174 ARE DISORDERED.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1ODH _refine_analyze.Luzzati_coordinate_error_obs 0.41 _refine_analyze.Luzzati_sigma_a_obs 0.66 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.77 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1277 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 1810 _refine_hist.d_res_high 2.85 _refine_hist.d_res_low 19.35 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.03 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.31 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.35 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.67 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.76 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.85 _refine_ls_shell.d_res_low 3.03 _refine_ls_shell.number_reflns_R_work 938 _refine_ls_shell.R_factor_R_work 0.424 _refine_ls_shell.percent_reflns_obs 96.3 _refine_ls_shell.R_factor_R_free 0.627 _refine_ls_shell.R_factor_R_free_error 0.074 _refine_ls_shell.percent_reflns_R_free 7.0 _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER_PROTIN.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP # _struct.entry_id 1ODH _struct.title 'Structure of the GCM domain bound to DNA' _struct.pdbx_descriptor MGCM1 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ODH _struct_keywords.pdbx_keywords 'TRANSCRIPTION FACTOR/DNA' _struct_keywords.text 'TRANSCRIPTION FACTOR/DNA, TRANSCRIPTION FACTOR, DNA-BINDING DOMAIN, PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ;THE TRIMERIC ASSEMBLY DESCRIBED BELOW IS MADE UP BYA PROTEIN MONOMER BOUND TO A DNA DUPLEX. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 49 ? ARG A 54 ? ASP A 49 ARG A 54 1 ? 6 HELX_P HELX_P2 2 CYS A 101 ? LYS A 111 ? CYS A 101 LYS A 111 1 ? 11 HELX_P HELX_P3 3 THR A 159 ? ALA A 168 ? THR A 159 ALA A 168 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 125 SG ? ? A ZN 1171 A CYS 125 1_555 ? ? ? ? ? ? ? 2.274 ? metalc2 metalc ? ? D ZN . ZN ? ? ? 1_555 A HIS 154 NE2 ? ? A ZN 1171 A HIS 154 1_555 ? ? ? ? ? ? ? 2.332 ? metalc3 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 76 SG ? ? A ZN 1171 A CYS 76 1_555 ? ? ? ? ? ? ? 2.289 ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 A HIS 152 ND1 ? ? A ZN 1171 A HIS 152 1_555 ? ? ? ? ? ? ? 2.179 ? metalc5 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 113 SG ? ? A ZN 1172 A CYS 113 1_555 ? ? ? ? ? ? ? 2.696 ? metalc6 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 116 SG ? ? A ZN 1172 A CYS 116 1_555 ? ? ? ? ? ? ? 2.522 ? metalc7 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 86 SG ? ? A ZN 1172 A CYS 86 1_555 ? ? ? ? ? ? ? 2.513 ? metalc8 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 82 SG ? ? A ZN 1172 A CYS 82 1_555 ? ? ? ? ? ? ? 2.482 ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 13 N1 ? ? C DC 1001 D DG 1026 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 13 O6 ? ? C DC 1001 D DG 1026 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 13 N2 ? ? C DC 1001 D DG 1026 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 12 N3 ? ? C DG 1002 D DC 1025 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 12 O2 ? ? C DG 1002 D DC 1025 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 12 N4 ? ? C DG 1002 D DC 1025 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 11 N3 ? ? C DA 1003 D DT 1024 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 11 O4 ? ? C DA 1003 D DT 1024 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 10 N1 ? ? C DT 1004 D DA 1023 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 10 N6 ? ? C DT 1004 D DA 1023 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 9 N3 ? ? C DG 1005 D DC 1022 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 9 O2 ? ? C DG 1005 D DC 1022 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 9 N4 ? ? C DG 1005 D DC 1022 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 8 N1 ? ? C DC 1006 D DG 1021 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 8 O6 ? ? C DC 1006 D DG 1021 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 8 N2 ? ? C DC 1006 D DG 1021 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 7 N3 ? ? C DG 1007 D DC 1020 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 7 O2 ? ? C DG 1007 D DC 1020 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 7 N4 ? ? C DG 1007 D DC 1020 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 6 N3 ? ? C DG 1008 D DC 1019 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 6 O2 ? ? C DG 1008 D DC 1019 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 6 N4 ? ? C DG 1008 D DC 1019 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 5 N3 ? ? C DG 1009 D DC 1018 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 5 O2 ? ? C DG 1009 D DC 1018 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 5 N4 ? ? C DG 1009 D DC 1018 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 4 N1 ? ? C DT 1010 D DA 1017 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 4 N6 ? ? C DT 1010 D DA 1017 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? C DG 1011 D DC 1016 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? C DG 1011 D DC 1016 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? C DG 1011 D DC 1016 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 2 N1 ? ? C DC 1012 D DG 1015 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 2 O6 ? ? C DC 1012 D DG 1015 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 2 N2 ? ? C DC 1012 D DG 1015 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 1 N3 ? ? C DA 1013 D DT 1014 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 1 O4 ? ? C DA 1013 D DT 1014 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 42 ? HIS A 43 ? LYS A 42 HIS A 43 AA 2 ILE A 144 ? LYS A 149 ? ILE A 144 LYS A 149 AA 3 THR A 134 ? HIS A 139 ? THR A 134 HIS A 139 AA 4 LEU A 72 ? CYS A 76 ? LEU A 72 CYS A 76 AA 5 MET A 61 ? THR A 64 ? MET A 61 THR A 64 AB 1 TYR A 95 ? LEU A 96 ? TYR A 95 LEU A 96 AB 2 VAL A 79 ? CYS A 82 ? VAL A 79 CYS A 82 AB 3 LEU A 120 ? ILE A 123 ? LEU A 120 ILE A 123 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N HIS A 43 ? N HIS A 43 O PHE A 146 ? O PHE A 146 AA 2 3 N LYS A 149 ? N LYS A 149 O THR A 134 ? O THR A 134 AA 3 4 N TRP A 137 ? N TRP A 137 O LEU A 72 ? O LEU A 72 AA 4 5 N SER A 75 ? N SER A 75 O ARG A 62 ? O ARG A 62 AB 1 2 N LEU A 96 ? N LEU A 96 O VAL A 80 ? O VAL A 80 AB 2 3 N VAL A 81 ? N VAL A 81 O LYS A 121 ? O LYS A 121 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A1171' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A1172' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 76 ? CYS A 76 . ? 1_555 ? 2 AC1 4 CYS A 125 ? CYS A 125 . ? 1_555 ? 3 AC1 4 HIS A 152 ? HIS A 152 . ? 1_555 ? 4 AC1 4 HIS A 154 ? HIS A 154 . ? 1_555 ? 5 AC2 4 CYS A 82 ? CYS A 82 . ? 1_555 ? 6 AC2 4 CYS A 86 ? CYS A 86 . ? 1_555 ? 7 AC2 4 CYS A 113 ? CYS A 113 . ? 1_555 ? 8 AC2 4 CYS A 116 ? CYS A 116 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ODH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ODH _atom_sites.fract_transf_matrix[1][1] 0.023918 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005627 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018900 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016314 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 ASP 4 4 ? ? ? A . n A 1 5 ASP 5 5 ? ? ? A . n A 1 6 PHE 6 6 ? ? ? A . n A 1 7 ASP 7 7 ? ? ? A . n A 1 8 PRO 8 8 ? ? ? A . n A 1 9 GLU 9 9 ? ? ? A . n A 1 10 ASP 10 10 ? ? ? A . n A 1 11 LYS 11 11 ? ? ? A . n A 1 12 GLU 12 12 ? ? ? A . n A 1 13 ILE 13 13 ? ? ? A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 TRP 16 16 16 TRP TRP A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 TRP 59 59 59 TRP TRP A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 CYS 82 82 82 CYS CYS A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 CYS 86 86 86 CYS CYS A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 CYS 101 101 101 CYS CYS A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 CYS 113 113 113 CYS CYS A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 CYS 116 116 116 CYS CYS A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 CYS 125 125 125 CYS CYS A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 PHE 131 131 131 PHE PHE A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 ASN 135 135 135 ASN ASN A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 HIS 139 139 139 HIS HIS A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 SER 148 148 148 SER SER A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 HIS 154 154 154 HIS HIS A . n A 1 155 PRO 155 155 155 PRO PRO A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 THR 159 159 159 THR THR A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 MET 169 169 169 MET MET A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 VAL 172 172 ? ? ? A . n A 1 173 HIS 173 173 ? ? ? A . n A 1 174 MET 174 174 ? ? ? A . n B 2 1 DC 1 1001 1001 DC DC C . n B 2 2 DG 2 1002 1002 DG DG C . n B 2 3 DA 3 1003 1003 DA DA C . n B 2 4 DT 4 1004 1004 DT DT C . n B 2 5 DG 5 1005 1005 DG DG C . n B 2 6 DC 6 1006 1006 DC DC C . n B 2 7 DG 7 1007 1007 DG DG C . n B 2 8 DG 8 1008 1008 DG DG C . n B 2 9 DG 9 1009 1009 DG DG C . n B 2 10 DT 10 1010 1010 DT DT C . n B 2 11 DG 11 1011 1011 DG DG C . n B 2 12 DC 12 1012 1012 DC DC C . n B 2 13 DA 13 1013 1013 DA DA C . n C 3 1 DT 1 1014 1014 DT DT D . n C 3 2 DG 2 1015 1015 DG DG D . n C 3 3 DC 3 1016 1016 DC DC D . n C 3 4 DA 4 1017 1017 DA DA D . n C 3 5 DC 5 1018 1018 DC DC D . n C 3 6 DC 6 1019 1019 DC DC D . n C 3 7 DC 7 1020 1020 DC DC D . n C 3 8 DG 8 1021 1021 DG DG D . n C 3 9 DC 9 1022 1022 DC DC D . n C 3 10 DA 10 1023 1023 DA DA D . n C 3 11 DT 11 1024 1024 DT DT D . n C 3 12 DC 12 1025 1025 DC DC D . n C 3 13 DG 13 1026 1026 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 1171 1171 ZN ZN A . E 4 ZN 1 1172 1172 ZN ZN A . F 5 HOH 1 2001 2001 HOH HOH A . F 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 1 2001 2001 HOH HOH C . G 5 HOH 2 2002 2002 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 125 ? A CYS 125 ? 1_555 ZN ? D ZN . ? A ZN 1171 ? 1_555 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 95.4 ? 2 SG ? A CYS 125 ? A CYS 125 ? 1_555 ZN ? D ZN . ? A ZN 1171 ? 1_555 SG ? A CYS 76 ? A CYS 76 ? 1_555 98.4 ? 3 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 ZN ? D ZN . ? A ZN 1171 ? 1_555 SG ? A CYS 76 ? A CYS 76 ? 1_555 91.1 ? 4 SG ? A CYS 125 ? A CYS 125 ? 1_555 ZN ? D ZN . ? A ZN 1171 ? 1_555 ND1 ? A HIS 152 ? A HIS 152 ? 1_555 113.6 ? 5 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 ZN ? D ZN . ? A ZN 1171 ? 1_555 ND1 ? A HIS 152 ? A HIS 152 ? 1_555 133.5 ? 6 SG ? A CYS 76 ? A CYS 76 ? 1_555 ZN ? D ZN . ? A ZN 1171 ? 1_555 ND1 ? A HIS 152 ? A HIS 152 ? 1_555 117.7 ? 7 SG ? A CYS 113 ? A CYS 113 ? 1_555 ZN ? E ZN . ? A ZN 1172 ? 1_555 SG ? A CYS 116 ? A CYS 116 ? 1_555 113.9 ? 8 SG ? A CYS 113 ? A CYS 113 ? 1_555 ZN ? E ZN . ? A ZN 1172 ? 1_555 SG ? A CYS 86 ? A CYS 86 ? 1_555 117.9 ? 9 SG ? A CYS 116 ? A CYS 116 ? 1_555 ZN ? E ZN . ? A ZN 1172 ? 1_555 SG ? A CYS 86 ? A CYS 86 ? 1_555 112.2 ? 10 SG ? A CYS 113 ? A CYS 113 ? 1_555 ZN ? E ZN . ? A ZN 1172 ? 1_555 SG ? A CYS 82 ? A CYS 82 ? 1_555 110.0 ? 11 SG ? A CYS 116 ? A CYS 116 ? 1_555 ZN ? E ZN . ? A ZN 1172 ? 1_555 SG ? A CYS 82 ? A CYS 82 ? 1_555 89.5 ? 12 SG ? A CYS 86 ? A CYS 86 ? 1_555 ZN ? E ZN . ? A ZN 1172 ? 1_555 SG ? A CYS 82 ? A CYS 82 ? 1_555 109.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-04-08 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 HKL 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 D _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 1025 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_2 D _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 1025 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 D _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 1025 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.58 _pdbx_validate_rmsd_angle.angle_target_value 102.40 _pdbx_validate_rmsd_angle.angle_deviation -4.82 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.80 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 15 ? ? -108.87 -80.11 2 1 ILE A 18 ? ? -159.44 -128.50 3 1 ASP A 20 ? ? -38.71 165.15 4 1 GLN A 25 ? ? -141.97 37.18 5 1 ASP A 31 ? ? -39.91 146.88 6 1 TRP A 36 ? ? -119.12 62.14 7 1 SER A 39 ? ? 72.64 41.99 8 1 ILE A 44 ? ? -141.90 16.67 9 1 TYR A 45 ? ? -17.51 144.59 10 1 ASP A 49 ? ? -63.73 97.30 11 1 ASN A 68 ? ? -165.39 103.40 12 1 ASP A 85 ? ? 56.31 -5.41 13 1 CYS A 86 ? ? -29.23 151.95 14 1 THR A 88 ? ? -58.84 -157.67 15 1 ASN A 115 ? ? -104.28 -78.83 16 1 ASN A 117 ? ? 53.98 19.95 17 1 ARG A 126 ? ? 171.37 28.68 18 1 ASP A 140 ? ? -116.48 58.49 19 1 ASP A 153 ? ? -101.09 51.47 20 1 HIS A 154 ? ? -172.06 147.48 21 1 PRO A 157 ? ? -68.51 -176.94 22 1 LYS A 170 ? ? -100.70 -62.48 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 1009 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.064 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 14 ? CG ? A LEU 14 CG 2 1 Y 1 A LEU 14 ? CD1 ? A LEU 14 CD1 3 1 Y 1 A LEU 14 ? CD2 ? A LEU 14 CD2 4 1 Y 1 A SER 15 ? OG ? A SER 15 OG 5 1 Y 1 A TRP 16 ? CG ? A TRP 16 CG 6 1 Y 1 A TRP 16 ? CD1 ? A TRP 16 CD1 7 1 Y 1 A TRP 16 ? CD2 ? A TRP 16 CD2 8 1 Y 1 A TRP 16 ? NE1 ? A TRP 16 NE1 9 1 Y 1 A TRP 16 ? CE2 ? A TRP 16 CE2 10 1 Y 1 A TRP 16 ? CE3 ? A TRP 16 CE3 11 1 Y 1 A TRP 16 ? CZ2 ? A TRP 16 CZ2 12 1 Y 1 A TRP 16 ? CZ3 ? A TRP 16 CZ3 13 1 Y 1 A TRP 16 ? CH2 ? A TRP 16 CH2 14 1 Y 1 A LYS 171 ? CA ? A LYS 171 CA 15 1 Y 1 A LYS 171 ? C ? A LYS 171 C 16 1 Y 1 A LYS 171 ? O ? A LYS 171 O 17 1 Y 1 A LYS 171 ? CB ? A LYS 171 CB 18 1 Y 1 A LYS 171 ? CG ? A LYS 171 CG 19 1 Y 1 A LYS 171 ? CD ? A LYS 171 CD 20 1 Y 1 A LYS 171 ? CE ? A LYS 171 CE 21 1 Y 1 A LYS 171 ? NZ ? A LYS 171 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A ASP 4 ? A ASP 4 5 1 Y 1 A ASP 5 ? A ASP 5 6 1 Y 1 A PHE 6 ? A PHE 6 7 1 Y 1 A ASP 7 ? A ASP 7 8 1 Y 1 A PRO 8 ? A PRO 8 9 1 Y 1 A GLU 9 ? A GLU 9 10 1 Y 1 A ASP 10 ? A ASP 10 11 1 Y 1 A LYS 11 ? A LYS 11 12 1 Y 1 A GLU 12 ? A GLU 12 13 1 Y 1 A ILE 13 ? A ILE 13 14 1 Y 1 A VAL 172 ? A VAL 172 15 1 Y 1 A HIS 173 ? A HIS 173 16 1 Y 1 A MET 174 ? A MET 174 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ODH 'double helix' 1ODH 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 13 1_555 -0.055 -0.178 -0.063 -1.930 -1.440 -3.563 1 C_DC1001:DG1026_D C 1001 ? D 1026 ? 19 1 1 B DG 2 1_555 C DC 12 1_555 -0.137 -0.129 0.136 4.268 -0.908 -2.779 2 C_DG1002:DC1025_D C 1002 ? D 1025 ? 19 1 1 B DA 3 1_555 C DT 11 1_555 -0.013 -0.296 -0.372 1.430 -8.988 1.484 3 C_DA1003:DT1024_D C 1003 ? D 1024 ? 20 1 1 B DT 4 1_555 C DA 10 1_555 0.089 -0.102 -0.417 9.734 -0.709 1.830 4 C_DT1004:DA1023_D C 1004 ? D 1023 ? 20 1 1 B DG 5 1_555 C DC 9 1_555 -0.144 -0.098 -0.176 1.148 -3.510 0.897 5 C_DG1005:DC1022_D C 1005 ? D 1022 ? 19 1 1 B DC 6 1_555 C DG 8 1_555 0.190 0.014 -0.307 -2.877 2.711 1.973 6 C_DC1006:DG1021_D C 1006 ? D 1021 ? 19 1 1 B DG 7 1_555 C DC 7 1_555 -0.078 -0.103 -0.314 5.593 10.404 -3.214 7 C_DG1007:DC1020_D C 1007 ? D 1020 ? 19 1 1 B DG 8 1_555 C DC 6 1_555 0.008 0.012 0.122 -0.436 -0.838 -5.906 8 C_DG1008:DC1019_D C 1008 ? D 1019 ? 19 1 1 B DG 9 1_555 C DC 5 1_555 -0.272 -0.059 -0.322 -9.811 -8.684 -1.072 9 C_DG1009:DC1018_D C 1009 ? D 1018 ? 19 1 1 B DT 10 1_555 C DA 4 1_555 -0.119 -0.210 0.130 -1.823 2.032 -2.194 10 C_DT1010:DA1017_D C 1010 ? D 1017 ? 20 1 1 B DG 11 1_555 C DC 3 1_555 -0.201 -0.153 0.222 -1.996 -1.035 -1.918 11 C_DG1011:DC1016_D C 1011 ? D 1016 ? 19 1 1 B DC 12 1_555 C DG 2 1_555 0.083 -0.255 -0.128 -3.792 4.286 1.489 12 C_DC1012:DG1015_D C 1012 ? D 1015 ? 19 1 1 B DA 13 1_555 C DT 1 1_555 -0.055 -0.140 -0.304 -8.689 -2.322 7.357 13 C_DA1013:DT1014_D C 1013 ? D 1014 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 13 1_555 B DG 2 1_555 C DC 12 1_555 0.930 -0.101 3.214 -0.733 4.710 29.785 -1.132 -1.934 3.138 9.090 1.414 30.155 1 CC_DC1001DG1002:DC1025DG1026_DD C 1001 ? D 1026 ? C 1002 ? D 1025 ? 1 B DG 2 1_555 C DC 12 1_555 B DA 3 1_555 C DT 11 1_555 -0.817 0.002 3.524 0.514 1.423 37.724 -0.195 1.334 3.510 2.199 -0.795 37.753 2 CC_DG1002DA1003:DT1024DC1025_DD C 1002 ? D 1025 ? C 1003 ? D 1024 ? 1 B DA 3 1_555 C DT 11 1_555 B DT 4 1_555 C DA 10 1_555 0.701 -0.607 3.107 0.571 4.107 30.903 -1.865 -1.203 3.015 7.664 -1.066 31.173 3 CC_DA1003DT1004:DA1023DT1024_DD C 1003 ? D 1024 ? C 1004 ? D 1023 ? 1 B DT 4 1_555 C DA 10 1_555 B DG 5 1_555 C DC 9 1_555 -0.340 -0.788 3.502 -0.839 13.032 28.802 -3.929 0.465 2.893 24.661 1.588 31.567 4 CC_DT1004DG1005:DC1022DA1023_DD C 1004 ? D 1023 ? C 1005 ? D 1022 ? 1 B DG 5 1_555 C DC 9 1_555 B DC 6 1_555 C DG 8 1_555 0.496 -0.938 3.434 0.937 2.556 34.894 -1.961 -0.678 3.371 4.255 -1.559 34.997 5 CC_DG1005DC1006:DG1021DC1022_DD C 1005 ? D 1022 ? C 1006 ? D 1021 ? 1 B DC 6 1_555 C DG 8 1_555 B DG 7 1_555 C DC 7 1_555 0.088 -0.144 3.323 0.282 6.213 25.489 -2.016 -0.118 3.199 13.821 -0.628 26.225 6 CC_DC1006DG1007:DC1020DG1021_DD C 1006 ? D 1021 ? C 1007 ? D 1020 ? 1 B DG 7 1_555 C DC 7 1_555 B DG 8 1_555 C DC 6 1_555 -0.770 -0.533 3.422 -4.523 4.832 36.216 -1.536 0.573 3.394 7.694 7.202 36.796 7 CC_DG1007DG1008:DC1019DC1020_DD C 1007 ? D 1020 ? C 1008 ? D 1019 ? 1 B DG 8 1_555 C DC 6 1_555 B DG 9 1_555 C DC 5 1_555 1.020 -0.712 3.538 4.243 4.735 33.862 -2.003 -1.005 3.508 8.041 -7.206 34.437 8 CC_DG1008DG1009:DC1018DC1019_DD C 1008 ? D 1019 ? C 1009 ? D 1018 ? 1 B DG 9 1_555 C DC 5 1_555 B DT 10 1_555 C DA 4 1_555 -0.759 -1.222 3.078 -4.517 4.521 29.846 -3.160 0.606 2.945 8.653 8.645 30.507 9 CC_DG1009DT1010:DA1017DC1018_DD C 1009 ? D 1018 ? C 1010 ? D 1017 ? 1 B DT 10 1_555 C DA 4 1_555 B DG 11 1_555 C DC 3 1_555 0.004 -0.323 3.244 -1.214 5.690 34.122 -1.406 -0.191 3.149 9.610 2.050 34.600 10 CC_DT1010DG1011:DC1016DA1017_DD C 1010 ? D 1017 ? C 1011 ? D 1016 ? 1 B DG 11 1_555 C DC 3 1_555 B DC 12 1_555 C DG 2 1_555 -0.130 -0.948 3.461 2.536 5.072 30.104 -2.830 0.764 3.240 9.657 -4.828 30.621 11 CC_DG1011DC1012:DG1015DC1016_DD C 1011 ? D 1016 ? C 1012 ? D 1015 ? 1 B DC 12 1_555 C DG 2 1_555 B DA 13 1_555 C DT 1 1_555 0.357 -0.537 3.280 1.056 11.650 35.128 -2.387 -0.424 2.969 18.673 -1.693 36.966 12 CC_DC1012DA1013:DT1014DG1015_DD C 1012 ? D 1015 ? C 1013 ? D 1014 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH #