HEADER TRANSCRIPTION FACTOR/DNA 19-FEB-03 1ODH TITLE STRUCTURE OF THE GCM DOMAIN BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MGCM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GCM DOMAIN, RESIDUES 1-174; COMPND 5 SYNONYM: MURINE GCMA (GLIA CELL MISSING) TRANSCRIPTION FACTOR GCM1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ZN-CONTAINING DNA-BINDING DOMAIN; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3'; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: DNA OLIGONUCLEOTIDE; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: DNA TARGET SITE OF THE GCM DOMAIN; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3'; COMPND 16 CHAIN: D; COMPND 17 SYNONYM: DNA OLIGONUCLEOTIDE; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: DNA TARGET SITE OF THE GCM DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS TRANSCRIPTION FACTOR/DNA, TRANSCRIPTION FACTOR, DNA-BINDING DOMAIN, KEYWDS 2 PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.X.COHEN,C.W.MULLER REVDAT 3 08-MAY-24 1ODH 1 LINK REVDAT 2 24-FEB-09 1ODH 1 VERSN REVDAT 1 08-APR-03 1ODH 0 JRNL AUTH S.X.COHEN,M.MOULIN,S.HASHEMOLHOSSEINI,K.KILIAN,M.WEGNER, JRNL AUTH 2 C.W.MULLER JRNL TITL CRYSTAL STRUCTURE OF THE GCM DOMAIN-DNA COMPLEX: A JRNL TITL 2 DNA-BINDING DOMAIN WITH A NOVEL FOLD AND MODE OF TARGET SITE JRNL TITL 3 RECOGNITION JRNL REF EMBO J. V. 22 1835 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12682016 JRNL DOI 10.1093/EMBOJ/CDG182 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 462777.100 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 6230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 938 REMARK 3 BIN R VALUE (WORKING SET) : 0.4240 REMARK 3 BIN FREE R VALUE : 0.6270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 71 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.074 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1277 REMARK 3 NUCLEIC ACID ATOMS : 527 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 133.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.29000 REMARK 3 B22 (A**2) : 23.39000 REMARK 3 B33 (A**2) : -5.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.66 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.77 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.670 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.760 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 38.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_PROTIN.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: N-TERMINAL RESIDUES 1-13 AND C- REMARK 3 TERMINAL RESIDUES 172-174 ARE DISORDERED. REMARK 4 REMARK 4 1ODH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRIMERIC ASSEMBLY DESCRIBED BELOW IS REMARK 300 MADE UP BYA PROTEIN MONOMER BOUND TO A DNA REMARK 300 DUPLEX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 5 REMARK 465 PHE A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 ASP A 10 REMARK 465 LYS A 11 REMARK 465 GLU A 12 REMARK 465 ILE A 13 REMARK 465 VAL A 172 REMARK 465 HIS A 173 REMARK 465 MET A 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 SER A 15 OG REMARK 470 TRP A 16 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 16 CZ3 CH2 REMARK 470 LYS A 171 CA C O CB CG CD CE REMARK 470 LYS A 171 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D1025 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 -80.11 -108.87 REMARK 500 ILE A 18 -128.50 -159.44 REMARK 500 ASP A 20 165.15 -38.71 REMARK 500 GLN A 25 37.18 -141.97 REMARK 500 ASP A 31 146.88 -39.91 REMARK 500 TRP A 36 62.14 -119.12 REMARK 500 SER A 39 41.99 72.64 REMARK 500 ILE A 44 16.67 -141.90 REMARK 500 TYR A 45 144.59 -17.51 REMARK 500 ASP A 49 97.30 -63.73 REMARK 500 ASN A 68 103.40 -165.39 REMARK 500 ASP A 85 -5.41 56.31 REMARK 500 CYS A 86 151.95 -29.23 REMARK 500 THR A 88 -157.67 -58.84 REMARK 500 ASN A 115 -78.83 -104.28 REMARK 500 ASN A 117 19.95 53.98 REMARK 500 ARG A 126 28.68 171.37 REMARK 500 ASP A 140 58.49 -116.48 REMARK 500 ASP A 153 51.47 -101.09 REMARK 500 HIS A 154 147.48 -172.06 REMARK 500 PRO A 157 -176.94 -68.51 REMARK 500 LYS A 170 -62.48 -100.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C1009 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1171 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 76 SG REMARK 620 2 CYS A 125 SG 98.4 REMARK 620 3 HIS A 152 ND1 117.7 113.6 REMARK 620 4 HIS A 154 NE2 91.1 95.4 133.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1172 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 82 SG REMARK 620 2 CYS A 86 SG 109.5 REMARK 620 3 CYS A 113 SG 110.0 117.9 REMARK 620 4 CYS A 116 SG 89.5 112.2 113.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1172 DBREF 1ODH A 1 174 UNP P70348 P70348 1 174 DBREF 1ODH C 1001 1013 PDB 1ODH 1ODH 1001 1013 DBREF 1ODH D 1014 1026 PDB 1ODH 1ODH 1014 1026 SEQRES 1 A 174 MET GLU LEU ASP ASP PHE ASP PRO GLU ASP LYS GLU ILE SEQRES 2 A 174 LEU SER TRP ASP ILE ASN ASP VAL LYS LEU PRO GLN ASN SEQRES 3 A 174 VAL LYS THR THR ASP TRP PHE GLN GLU TRP PRO ASP SER SEQRES 4 A 174 TYR VAL LYS HIS ILE TYR SER SER ASP ASP ARG ASN ALA SEQRES 5 A 174 GLN ARG HIS LEU SER SER TRP ALA MET ARG ASN THR ASN SEQRES 6 A 174 ASN HIS ASN SER ARG ILE LEU LYS LYS SER CYS LEU GLY SEQRES 7 A 174 VAL VAL VAL CYS SER ARG ASP CYS SER THR GLU GLU GLY SEQRES 8 A 174 ARG LYS ILE TYR LEU ARG PRO ALA ILE CYS ASP LYS ALA SEQRES 9 A 174 ARG GLN LYS GLN GLN ARG LYS SER CYS PRO ASN CYS ASN SEQRES 10 A 174 GLY PRO LEU LYS LEU ILE PRO CYS ARG GLY HIS GLY GLY SEQRES 11 A 174 PHE PRO VAL THR ASN PHE TRP ARG HIS ASP GLY ARG PHE SEQRES 12 A 174 ILE PHE PHE GLN SER LYS GLY GLU HIS ASP HIS PRO ARG SEQRES 13 A 174 PRO GLU THR LYS LEU GLU ALA GLU ALA ARG ARG ALA MET SEQRES 14 A 174 LYS LYS VAL HIS MET SEQRES 1 C 13 DC DG DA DT DG DC DG DG DG DT DG DC DA SEQRES 1 D 13 DT DG DC DA DC DC DC DG DC DA DT DC DG HET ZN A1171 1 HET ZN A1172 1 HETNAM ZN ZINC ION FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *4(H2 O) HELIX 1 1 ASP A 49 ARG A 54 1 6 HELIX 2 2 CYS A 101 LYS A 111 1 11 HELIX 3 3 THR A 159 ALA A 168 1 10 SHEET 1 AA 5 LYS A 42 HIS A 43 0 SHEET 2 AA 5 ILE A 144 LYS A 149 -1 O PHE A 146 N HIS A 43 SHEET 3 AA 5 THR A 134 HIS A 139 -1 O THR A 134 N LYS A 149 SHEET 4 AA 5 LEU A 72 CYS A 76 -1 O LEU A 72 N TRP A 137 SHEET 5 AA 5 MET A 61 THR A 64 -1 O ARG A 62 N SER A 75 SHEET 1 AB 3 TYR A 95 LEU A 96 0 SHEET 2 AB 3 VAL A 79 CYS A 82 -1 O VAL A 80 N LEU A 96 SHEET 3 AB 3 LEU A 120 ILE A 123 -1 O LYS A 121 N VAL A 81 LINK SG CYS A 76 ZN ZN A1171 1555 1555 2.29 LINK SG CYS A 82 ZN ZN A1172 1555 1555 2.48 LINK SG CYS A 86 ZN ZN A1172 1555 1555 2.51 LINK SG CYS A 113 ZN ZN A1172 1555 1555 2.70 LINK SG CYS A 116 ZN ZN A1172 1555 1555 2.52 LINK SG CYS A 125 ZN ZN A1171 1555 1555 2.27 LINK ND1 HIS A 152 ZN ZN A1171 1555 1555 2.18 LINK NE2 HIS A 154 ZN ZN A1171 1555 1555 2.33 SITE 1 AC1 4 CYS A 76 CYS A 125 HIS A 152 HIS A 154 SITE 1 AC2 4 CYS A 82 CYS A 86 CYS A 113 CYS A 116 CRYST1 41.810 52.910 62.970 90.00 103.24 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023918 0.000000 0.005627 0.00000 SCALE2 0.000000 0.018900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016314 0.00000 CONECT 521 1808 CONECT 560 1809 CONECT 591 1809 CONECT 812 1809 CONECT 833 1809 CONECT 898 1808 CONECT 1125 1808 CONECT 1146 1808 CONECT 1808 521 898 1125 1146 CONECT 1809 560 591 812 833 MASTER 353 0 2 3 8 0 2 6 1810 3 10 16 END