HEADER TRANSCRIPTION FACTOR/DNA 19-FEB-03 1ODH TITLE STRUCTURE OF THE GCM DOMAIN BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MGCM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GCM DOMAIN, RESIDUES 1-174; COMPND 5 SYNONYM: MURINE GCMA (GLIA CELL MISSING) TRANSCRIPTION FACTOR GCM1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ZN-CONTAINING DNA-BINDING DOMAIN; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*CP*GP*AP*TP*GP*CP*GP*GP*GP*TP *GP*CP*A)-3'; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: DNA OLIGONUCLEOTIDE; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: DNA TARGET SITE OF THE GCM DOMAIN; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*TP*GP*CP*AP*CP*CP*CP*GP*CP*AP *TP*CP*G)-3'; COMPND 16 CHAIN: D; COMPND 17 SYNONYM: DNA OLIGONUCLEOTIDE; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: DNA TARGET SITE OF THE GCM DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS TRANSCRIPTION FACTOR/DNA, TRANSCRIPTION FACTOR, DNA-BINDING DOMAIN, KEYWDS 2 PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.X.COHEN,C.W.MULLER REVDAT 3 08-MAY-24 1ODH 1 LINK REVDAT 2 24-FEB-09 1ODH 1 VERSN REVDAT 1 08-APR-03 1ODH 0 JRNL AUTH S.X.COHEN,M.MOULIN,S.HASHEMOLHOSSEINI,K.KILIAN,M.WEGNER, JRNL AUTH 2 C.W.MULLER JRNL TITL CRYSTAL STRUCTURE OF THE GCM DOMAIN-DNA COMPLEX: A JRNL TITL 2 DNA-BINDING DOMAIN WITH A NOVEL FOLD AND MODE OF TARGET SITE JRNL TITL 3 RECOGNITION JRNL REF EMBO J. V. 22 1835 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12682016 JRNL DOI 10.1093/EMBOJ/CDG182 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 462777.100 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 6230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 938 REMARK 3 BIN R VALUE (WORKING SET) : 0.4240 REMARK 3 BIN FREE R VALUE : 0.6270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 71 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.074 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1277 REMARK 3 NUCLEIC ACID ATOMS : 527 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 133.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.29000 REMARK 3 B22 (A**2) : 23.39000 REMARK 3 B33 (A**2) : -5.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.66 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.77 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.670 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.760 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 38.79 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_PROTIN.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: N-TERMINAL RESIDUES 1-13 AND C- REMARK 3 TERMINAL RESIDUES 172-174 ARE DISORDERED. REMARK 4 REMARK 4 1ODH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18243 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRIMERIC ASSEMBLY DESCRIBED BELOW IS REMARK 300 MADE UP BYA PROTEIN MONOMER BOUND TO A DNA REMARK 300 DUPLEX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 5 REMARK 465 PHE A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 ASP A 10 REMARK 465 LYS A 11 REMARK 465 GLU A 12 REMARK 465 ILE A 13 REMARK 465 VAL A 172 REMARK 465 HIS A 173 REMARK 465 MET A 174 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 SER A 15 OG REMARK 470 TRP A 16 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 16 CZ3 CH2 REMARK 470 LYS A 171 CA C O CB CG CD CE REMARK 470 LYS A 171 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D1025 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 -80.11 -108.87 REMARK 500 ILE A 18 -128.50 -159.44 REMARK 500 ASP A 20 165.15 -38.71 REMARK 500 GLN A 25 37.18 -141.97 REMARK 500 ASP A 31 146.88 -39.91 REMARK 500 TRP A 36 62.14 -119.12 REMARK 500 SER A 39 41.99 72.64 REMARK 500 ILE A 44 16.67 -141.90 REMARK 500 TYR A 45 144.59 -17.51 REMARK 500 ASP A 49 97.30 -63.73 REMARK 500 ASN A 68 103.40 -165.39 REMARK 500 ASP A 85 -5.41 56.31 REMARK 500 CYS A 86 151.95 -29.23 REMARK 500 THR A 88 -157.67 -58.84 REMARK 500 ASN A 115 -78.83 -104.28 REMARK 500 ASN A 117 19.95 53.98 REMARK 500 ARG A 126 28.68 171.37 REMARK 500 ASP A 140 58.49 -116.48 REMARK 500 ASP A 153 51.47 -101.09 REMARK 500 HIS A 154 147.48 -172.06 REMARK 500 PRO A 157 -176.94 -68.51 REMARK 500 LYS A 170 -62.48 -100.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C1009 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1171 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 76 SG REMARK 620 2 CYS A 125 SG 98.4 REMARK 620 3 HIS A 152 ND1 117.7 113.6 REMARK 620 4 HIS A 154 NE2 91.1 95.4 133.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1172 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 82 SG REMARK 620 2 CYS A 86 SG 109.5 REMARK 620 3 CYS A 113 SG 110.0 117.9 REMARK 620 4 CYS A 116 SG 89.5 112.2 113.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1172 DBREF 1ODH A 1 174 UNP P70348 P70348 1 174 DBREF 1ODH C 1001 1013 PDB 1ODH 1ODH 1001 1013 DBREF 1ODH D 1014 1026 PDB 1ODH 1ODH 1014 1026 SEQRES 1 A 174 MET GLU LEU ASP ASP PHE ASP PRO GLU ASP LYS GLU ILE SEQRES 2 A 174 LEU SER TRP ASP ILE ASN ASP VAL LYS LEU PRO GLN ASN SEQRES 3 A 174 VAL LYS THR THR ASP TRP PHE GLN GLU TRP PRO ASP SER SEQRES 4 A 174 TYR VAL LYS HIS ILE TYR SER SER ASP ASP ARG ASN ALA SEQRES 5 A 174 GLN ARG HIS LEU SER SER TRP ALA MET ARG ASN THR ASN SEQRES 6 A 174 ASN HIS ASN SER ARG ILE LEU LYS LYS SER CYS LEU GLY SEQRES 7 A 174 VAL VAL VAL CYS SER ARG ASP CYS SER THR GLU GLU GLY SEQRES 8 A 174 ARG LYS ILE TYR LEU ARG PRO ALA ILE CYS ASP LYS ALA SEQRES 9 A 174 ARG GLN LYS GLN GLN ARG LYS SER CYS PRO ASN CYS ASN SEQRES 10 A 174 GLY PRO LEU LYS LEU ILE PRO CYS ARG GLY HIS GLY GLY SEQRES 11 A 174 PHE PRO VAL THR ASN PHE TRP ARG HIS ASP GLY ARG PHE SEQRES 12 A 174 ILE PHE PHE GLN SER LYS GLY GLU HIS ASP HIS PRO ARG SEQRES 13 A 174 PRO GLU THR LYS LEU GLU ALA GLU ALA ARG ARG ALA MET SEQRES 14 A 174 LYS LYS VAL HIS MET SEQRES 1 C 13 DC DG DA DT DG DC DG DG DG DT DG DC DA SEQRES 1 D 13 DT DG DC DA DC DC DC DG DC DA DT DC DG HET ZN A1171 1 HET ZN A1172 1 HETNAM ZN ZINC ION FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *4(H2 O) HELIX 1 1 ASP A 49 ARG A 54 1 6 HELIX 2 2 CYS A 101 LYS A 111 1 11 HELIX 3 3 THR A 159 ALA A 168 1 10 SHEET 1 AA 5 LYS A 42 HIS A 43 0 SHEET 2 AA 5 ILE A 144 LYS A 149 -1 O PHE A 146 N HIS A 43 SHEET 3 AA 5 THR A 134 HIS A 139 -1 O THR A 134 N LYS A 149 SHEET 4 AA 5 LEU A 72 CYS A 76 -1 O LEU A 72 N TRP A 137 SHEET 5 AA 5 MET A 61 THR A 64 -1 O ARG A 62 N SER A 75 SHEET 1 AB 3 TYR A 95 LEU A 96 0 SHEET 2 AB 3 VAL A 79 CYS A 82 -1 O VAL A 80 N LEU A 96 SHEET 3 AB 3 LEU A 120 ILE A 123 -1 O LYS A 121 N VAL A 81 LINK SG CYS A 76 ZN ZN A1171 1555 1555 2.29 LINK SG CYS A 82 ZN ZN A1172 1555 1555 2.48 LINK SG CYS A 86 ZN ZN A1172 1555 1555 2.51 LINK SG CYS A 113 ZN ZN A1172 1555 1555 2.70 LINK SG CYS A 116 ZN ZN A1172 1555 1555 2.52 LINK SG CYS A 125 ZN ZN A1171 1555 1555 2.27 LINK ND1 HIS A 152 ZN ZN A1171 1555 1555 2.18 LINK NE2 HIS A 154 ZN ZN A1171 1555 1555 2.33 SITE 1 AC1 4 CYS A 76 CYS A 125 HIS A 152 HIS A 154 SITE 1 AC2 4 CYS A 82 CYS A 86 CYS A 113 CYS A 116 CRYST1 41.810 52.910 62.970 90.00 103.24 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023918 0.000000 0.005627 0.00000 SCALE2 0.000000 0.018900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016314 0.00000