HEADER METAL BINDING PROTEIN 28-MAR-03 1OEK TITLE YODA FROM ESCHERICHIA COLI CRYSTALLISED WITH ZINC IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL-BINDING PROTEIN ZINT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CADMIUM-INDUCED PROTEIN ZINT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS METAL BINDING PROTEIN, STRESS PROTEIN, LIPOCALIN, YODA EXPDTA X-RAY DIFFRACTION AUTHOR G.DAVID,K.BLONDEAU,M.RENOUARD,S.PENEL,A.LEWIT-BENTLEY REVDAT 4 18-OCT-17 1OEK 1 REMARK REVDAT 3 24-FEB-09 1OEK 1 VERSN REVDAT 2 30-OCT-03 1OEK 1 JRNL REVDAT 1 15-AUG-03 1OEK 0 JRNL AUTH G.DAVID,K.BLONDEAU,M.SCHILTZ,S.PENEL,A.LEWIT-BENTLEY JRNL TITL YODA FROM ESCHERICHIA COLI IS A METAL-BINDING, JRNL TITL 2 LIPOCALIN-LIKE PROTEIN JRNL REF J.BIOL.CHEM. V. 278 43728 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12909634 JRNL DOI 10.1074/JBC.M304484200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 10445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.273 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.351 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1514 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.99000 REMARK 3 B22 (A**2) : 4.99000 REMARK 3 B33 (A**2) : -9.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.318 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.THE FIRST 8 RESIDUES AT THE N-TERMINUS ARE DISORDERED REMARK 4 REMARK 4 1OEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1290012472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14176 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 55.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 10% PEG 10000, 100 REMARK 280 MM SODIUM CACODYLATE, PH = 6.5 200 MM ZINC SULPHATE, 10% REMARK 280 GLYCEROL, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.30000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.30000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.30000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.30000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.30000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.30000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 114.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 GLY A 7 REMARK 465 LYS A 8 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 16 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB GLN A 180 O HOH A 2020 1.90 REMARK 500 OE1 GLU A 169 O HOH A 2014 2.07 REMARK 500 OD2 ASP A 143 OG SER A 151 2.08 REMARK 500 OH TYR A 179 O HOH A 2018 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 15 C LYS A 16 N -0.176 REMARK 500 LYS A 16 N LYS A 16 CA 0.201 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 15 CA - C - N ANGL. DEV. = 26.3 DEGREES REMARK 500 GLN A 15 O - C - N ANGL. DEV. = -30.3 DEGREES REMARK 500 LYS A 16 N - CA - CB ANGL. DEV. = -23.0 DEGREES REMARK 500 LYS A 16 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP A 24 CB - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 ASP A 24 CB - CG - OD2 ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 10 118.20 -0.21 REMARK 500 PRO A 53 -35.80 -36.76 REMARK 500 ALA A 68 -70.26 -47.61 REMARK 500 GLU A 83 -31.49 -37.49 REMARK 500 GLU A 88 139.57 -171.91 REMARK 500 ASN A 97 55.65 -141.92 REMARK 500 ASN A 98 32.69 71.83 REMARK 500 LYS A 116 -12.96 -46.29 REMARK 500 ARG A 149 139.85 165.33 REMARK 500 HIS A 153 158.43 172.35 REMARK 500 ASP A 161 -100.23 -63.39 REMARK 500 TRP A 173 78.77 -150.93 REMARK 500 GLN A 180 -55.66 -29.39 REMARK 500 SER A 192 66.55 -69.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 15 -17.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1194 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 HIS A 144 NE2 101.4 REMARK 620 3 HOH A2025 O 101.3 70.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1195 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 193 NE2 REMARK 620 2 HIS A 153 NE2 92.1 REMARK 620 3 GLU A 189 OE1 138.2 123.7 REMARK 620 4 GLU A 189 OE2 122.7 113.9 65.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1196 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2026 O REMARK 620 2 GLU A 93 OE2 128.8 REMARK 620 3 HIS A 95 ND1 123.8 61.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1197 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 24 OD1 REMARK 620 2 HIS A 75 NE2 70.5 REMARK 620 3 HOH A2027 O 90.5 97.7 REMARK 620 4 HOH A2028 O 84.6 101.2 157.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1197 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE: MAIRLYKLAVALGVFIVSAPAFS REMARK 999 THAT IS INCLUDED THE SWISPROT RECORD REMARK 999 UPSTREAM OF THE SEQUENCE CRYSTALLISED, REMARK 999 CORRESPONDS TO A SIGNAL SEQUENCE THAT REMARK 999 IS CLEAVED IN THE MATURE PROTEIN. DBREF 1OEK A 1 193 UNP P76344 YODA_ECOLI 24 216 SEQRES 1 A 193 HIS GLY HIS HIS SER HIS GLY LYS PRO LEU THR GLU VAL SEQRES 2 A 193 GLU GLN LYS ALA ALA ASN GLY VAL PHE ASP ASP ALA ASN SEQRES 3 A 193 VAL GLN ASN ARG THR LEU SER ASP TRP ASP GLY VAL TRP SEQRES 4 A 193 GLN SER VAL TYR PRO LEU LEU GLN SER GLY LYS LEU ASP SEQRES 5 A 193 PRO VAL PHE GLN LYS LYS ALA ASP ALA ASP LYS THR LYS SEQRES 6 A 193 THR PHE ALA GLU ILE LYS ASP TYR TYR HIS LYS GLY TYR SEQRES 7 A 193 ALA THR ASP ILE GLU MET ILE GLY ILE GLU ASP GLY ILE SEQRES 8 A 193 VAL GLU PHE HIS ARG ASN ASN GLU THR THR SER CYS LYS SEQRES 9 A 193 TYR ASP TYR ASP GLY TYR LYS ILE LEU THR TYR LYS SER SEQRES 10 A 193 GLY LYS LYS GLY VAL ARG TYR LEU PHE GLU CYS LYS ASP SEQRES 11 A 193 PRO GLU SER LYS ALA PRO LYS TYR ILE GLN PHE SER ASP SEQRES 12 A 193 HIS ILE ILE ALA PRO ARG LYS SER SER HIS PHE HIS ILE SEQRES 13 A 193 PHE MET GLY ASN ASP SER GLN GLN SER LEU LEU ASN GLU SEQRES 14 A 193 MET GLU ASN TRP PRO THR TYR TYR PRO TYR GLN LEU SER SEQRES 15 A 193 SER GLU GLU VAL VAL GLU GLU MET MET SER HIS HET ZN A1194 1 HET ZN A1195 1 HET ZN A1196 1 HET ZN A1197 1 HETNAM ZN ZINC ION FORMUL 2 ZN 4(ZN 2+) FORMUL 6 HOH *28(H2 O) HELIX 1 1 THR A 11 ASN A 19 1 9 HELIX 2 2 ASP A 23 VAL A 27 5 5 HELIX 3 3 THR A 31 TRP A 35 5 5 HELIX 4 4 VAL A 42 SER A 48 1 7 HELIX 5 5 LEU A 51 ASP A 60 1 10 HELIX 6 6 THR A 66 ALA A 79 1 14 HELIX 7 7 SER A 162 GLU A 169 1 8 HELIX 8 8 SER A 182 SER A 192 1 11 SHEET 1 AA 9 THR A 100 LYS A 104 0 SHEET 2 AA 9 ILE A 91 HIS A 95 -1 O VAL A 92 N CYS A 103 SHEET 3 AA 9 MET A 84 GLU A 88 -1 O MET A 84 N HIS A 95 SHEET 4 AA 9 GLY A 37 SER A 41 -1 O GLY A 37 N ILE A 87 SHEET 5 AA 9 THR A 175 PRO A 178 -1 O TYR A 177 N GLN A 40 SHEET 6 AA 9 PHE A 154 GLY A 159 -1 O PHE A 154 N TYR A 176 SHEET 7 AA 9 TYR A 138 SER A 142 -1 O TYR A 138 N GLY A 159 SHEET 8 AA 9 LYS A 120 GLU A 127 -1 O TYR A 124 N PHE A 141 SHEET 9 AA 9 ASP A 106 THR A 114 -1 O ASP A 106 N GLU A 127 SSBOND 1 CYS A 103 CYS A 128 1555 1555 2.05 LINK ZN ZN A1194 NE2 HIS A 155 1555 1555 2.22 LINK ZN ZN A1194 NE2 HIS A 144 1555 1555 1.95 LINK ZN ZN A1194 O HOH A2025 1555 1555 2.40 LINK ZN ZN A1195 NE2 HIS A 193 1555 1555 1.97 LINK ZN ZN A1195 NE2 HIS A 153 1555 1555 2.24 LINK ZN ZN A1195 OE1 GLU A 189 1555 1555 2.17 LINK ZN ZN A1195 OE2 GLU A 189 1555 1555 2.07 LINK ZN ZN A1196 O HOH A2026 1555 1555 2.54 LINK ZN ZN A1196 OE2 GLU A 93 1555 8666 2.16 LINK ZN ZN A1196 ND1 HIS A 95 1555 1555 2.39 LINK ZN ZN A1197 OD1 ASP A 24 1555 1555 2.12 LINK ZN ZN A1197 NE2 HIS A 75 1555 4454 2.58 LINK ZN ZN A1197 O HOH A2027 1555 1555 2.38 LINK ZN ZN A1197 O HOH A2028 1555 1555 2.60 SITE 1 AC1 4 HIS A 144 HIS A 155 HOH A2023 HOH A2025 SITE 1 AC2 4 HIS A 153 TYR A 177 GLU A 189 HIS A 193 SITE 1 AC3 3 GLU A 93 HIS A 95 HOH A2026 SITE 1 AC4 5 ASP A 24 GLN A 47 HIS A 75 HOH A2027 SITE 2 AC4 5 HOH A2028 CRYST1 58.600 58.600 152.000 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006579 0.00000