HEADER HYDROLASE/CARBOHYDRATE BINDING 07-APR-03 1OF3 TITLE STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN RECOGNITION TITLE 2 BY A CARBOHYDRATE-BINDING MODULE, TMCBM27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-MANNOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBOHYDRATE-BINDING MODULE, RESIDUES 505-680; COMPND 5 SYNONYM: TMCBM27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 28-TMCBM27 KEYWDS HYDROLASE/CARBOHYDRATE BINDING, MANNAN BINDING, CARBOHYDRATE BINDING KEYWDS 2 MODULE, POLYSACCHARIDE DEGRADATION, TMCBM27, HYDROLASE, HYDROLASE- KEYWDS 3 CARBOHYDRATE BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.B.BORASTON,T.J.REVETT,C.M.BORASTON,D.NURIZZO,G.J.DAVIES REVDAT 4 16-OCT-24 1OF3 1 LINK REVDAT 3 24-FEB-09 1OF3 1 VERSN REVDAT 2 12-JUN-03 1OF3 1 JRNL REVDAT 1 17-APR-03 1OF3 0 JRNL AUTH A.B.BORASTON,T.J.REVETT,C.M.BORASTON,D.NURIZZO,G.J.DAVIES JRNL TITL STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN JRNL TITL 2 RECOGNITION BY A CARBOHYDRATE BINDING MODULE, TMCBM27 JRNL REF STRUCTURE V. 11 665 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12791255 JRNL DOI 10.1016/S0969-2126(03)00100-X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1936 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2658 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13000 REMARK 3 B22 (A**2) : 1.13000 REMARK 3 B33 (A**2) : -2.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.908 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2915 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3948 ; 1.475 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.210 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2283 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1228 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.074 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1728 ; 0.983 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2782 ; 1.857 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1187 ; 3.054 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1166 ; 5.077 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-03. REMARK 100 THE DEPOSITION ID IS D_1290012538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9202 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36721 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.24600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M NA K PHOSPHATE, 0.1 M NA HEPES REMARK 280 PH 7.5, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.73700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.53900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.53900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.36850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.53900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.53900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.10550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.53900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.53900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.36850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.53900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.53900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 172.10550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.73700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 174 REMARK 465 GLY A 175 REMARK 465 MSE A 176 REMARK 465 MSE B -2 REMARK 465 ALA B -1 REMARK 465 GLY B 174 REMARK 465 GLY B 175 REMARK 465 MSE B 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 157 CZ NH1 NH2 REMARK 470 THR A 173 O REMARK 470 ARG B 157 CZ NH1 NH2 REMARK 470 THR B 173 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 135 O HOH A 2128 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 110 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 64 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG B 64 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP B 110 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 130 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 139 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 104 58.31 39.37 REMARK 500 ASP A 110 29.41 46.41 REMARK 500 PRO B 102 152.42 -48.82 REMARK 500 ASP B 110 18.37 56.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2003 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A2052 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A2066 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1174 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 O REMARK 620 2 GLY A 44 O 149.7 REMARK 620 3 GLY A 46 O 86.8 83.1 REMARK 620 4 ASP A 165 OD2 128.6 79.4 87.3 REMARK 620 5 ASP A 165 OD1 80.0 129.2 94.8 49.8 REMARK 620 6 HOH A2056 O 75.7 76.4 93.1 155.6 153.9 REMARK 620 7 HOH A2148 O 102.4 90.7 170.0 83.9 83.0 93.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1174 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 12 O REMARK 620 2 GLY B 44 O 144.1 REMARK 620 3 GLY B 46 O 86.6 80.2 REMARK 620 4 ASP B 165 OD2 130.8 83.3 92.2 REMARK 620 5 ASP B 165 OD1 82.0 132.1 95.1 49.0 REMARK 620 6 HOH B2048 O 69.2 77.9 92.1 159.8 149.9 REMARK 620 7 HOH B2127 O 101.6 90.9 171.0 85.2 89.8 87.5 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1174 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OF4 RELATED DB: PDB REMARK 900 STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN REMARK 900 RECOGNITION BY A CARBOHYDRATE -BINDING MODULE, TMCBM27 DBREF 1OF3 A -2 0 PDB 1OF3 1OF3 -2 0 DBREF 1OF3 A 1 176 UNP Q9RIK9 Q9RIK9 505 680 DBREF 1OF3 B -2 0 PDB 1OF3 1OF3 -2 0 DBREF 1OF3 B 1 176 UNP Q9RIK9 Q9RIK9 505 680 SEQRES 1 A 179 MSE ALA SER ASN GLU ALA ARG TYR VAL LEU ALA GLU GLU SEQRES 2 A 179 VAL ASP PHE SER SER PRO GLU GLU VAL LYS ASN TRP TRP SEQRES 3 A 179 ASN SER GLY THR TRP GLN ALA GLU PHE GLY SER PRO ASP SEQRES 4 A 179 ILE GLU TRP ASN GLY GLU VAL GLY ASN GLY ALA LEU GLN SEQRES 5 A 179 LEU ASN VAL LYS LEU PRO GLY LYS SER ASP TRP GLU GLU SEQRES 6 A 179 VAL ARG VAL ALA ARG LYS PHE GLU ARG LEU SER GLU CYS SEQRES 7 A 179 GLU ILE LEU GLU TYR ASP ILE TYR ILE PRO ASN VAL GLU SEQRES 8 A 179 GLY LEU LYS GLY ARG LEU ARG PRO TYR ALA VAL LEU ASN SEQRES 9 A 179 PRO GLY TRP VAL LYS ILE GLY LEU ASP MSE ASN ASN ALA SEQRES 10 A 179 ASN VAL GLU SER ALA GLU ILE ILE THR PHE GLY GLY LYS SEQRES 11 A 179 GLU TYR ARG ARG PHE HIS VAL ARG ILE GLU PHE ASP ARG SEQRES 12 A 179 THR ALA GLY VAL LYS GLU LEU HIS ILE GLY VAL VAL GLY SEQRES 13 A 179 ASP HIS LEU ARG TYR ASP GLY PRO ILE PHE ILE ASP ASN SEQRES 14 A 179 VAL ARG LEU TYR LYS ARG THR GLY GLY MSE SEQRES 1 B 179 MSE ALA SER ASN GLU ALA ARG TYR VAL LEU ALA GLU GLU SEQRES 2 B 179 VAL ASP PHE SER SER PRO GLU GLU VAL LYS ASN TRP TRP SEQRES 3 B 179 ASN SER GLY THR TRP GLN ALA GLU PHE GLY SER PRO ASP SEQRES 4 B 179 ILE GLU TRP ASN GLY GLU VAL GLY ASN GLY ALA LEU GLN SEQRES 5 B 179 LEU ASN VAL LYS LEU PRO GLY LYS SER ASP TRP GLU GLU SEQRES 6 B 179 VAL ARG VAL ALA ARG LYS PHE GLU ARG LEU SER GLU CYS SEQRES 7 B 179 GLU ILE LEU GLU TYR ASP ILE TYR ILE PRO ASN VAL GLU SEQRES 8 B 179 GLY LEU LYS GLY ARG LEU ARG PRO TYR ALA VAL LEU ASN SEQRES 9 B 179 PRO GLY TRP VAL LYS ILE GLY LEU ASP MSE ASN ASN ALA SEQRES 10 B 179 ASN VAL GLU SER ALA GLU ILE ILE THR PHE GLY GLY LYS SEQRES 11 B 179 GLU TYR ARG ARG PHE HIS VAL ARG ILE GLU PHE ASP ARG SEQRES 12 B 179 THR ALA GLY VAL LYS GLU LEU HIS ILE GLY VAL VAL GLY SEQRES 13 B 179 ASP HIS LEU ARG TYR ASP GLY PRO ILE PHE ILE ASP ASN SEQRES 14 B 179 VAL ARG LEU TYR LYS ARG THR GLY GLY MSE MODRES 1OF3 MSE A -2 MET SELENOMETHIONINE MODRES 1OF3 MSE A 111 MET SELENOMETHIONINE MODRES 1OF3 MSE B 111 MET SELENOMETHIONINE HET MSE A -2 8 HET MSE A 111 8 HET MSE B 111 8 HET CA A1174 1 HET CA B1174 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *283(H2 O) HELIX 1 1 SER A 15 LYS A 20 5 6 HELIX 2 2 GLU A 42 GLY A 46 5 5 HELIX 3 3 ARG A 71 CYS A 75 5 5 HELIX 4 4 GLU A 117 ALA A 119 5 3 HELIX 5 5 SER B 15 LYS B 20 5 6 HELIX 6 6 GLU B 42 GLY B 46 5 5 HELIX 7 7 ARG B 71 CYS B 75 5 5 HELIX 8 8 GLU B 117 ALA B 119 5 3 SHEET 1 AA 4 VAL A 6 VAL A 11 0 SHEET 2 AA 4 TYR A 158 LYS A 171 -1 O VAL A 167 N VAL A 11 SHEET 3 AA 4 ALA A 47 LEU A 54 -1 O LEU A 48 N ILE A 164 SHEET 4 AA 4 GLU A 31 ASN A 40 -1 O GLU A 31 N LYS A 53 SHEET 1 AB 5 VAL A 6 VAL A 11 0 SHEET 2 AB 5 TYR A 158 LYS A 171 -1 O VAL A 167 N VAL A 11 SHEET 3 AB 5 ILE A 77 PRO A 85 -1 O ILE A 77 N TYR A 170 SHEET 4 AB 5 LYS A 127 GLU A 137 -1 O ARG A 130 N ILE A 84 SHEET 5 AB 5 GLU A 120 PHE A 124 -1 O GLU A 120 N ARG A 131 SHEET 1 AC 8 VAL A 105 ILE A 107 0 SHEET 2 AC 8 TYR A 97 ASN A 101 -1 O ALA A 98 N ILE A 107 SHEET 3 AC 8 GLU A 146 ASP A 154 -1 O GLU A 146 N ASN A 101 SHEET 4 AC 8 GLU A 61 LYS A 68 -1 O GLU A 61 N GLY A 153 SHEET 5 AC 8 TRP A 22 TRP A 28 -1 O TRP A 23 N ALA A 66 SHEET 6 AC 8 TRP B 22 TRP B 28 1 O THR B 27 N THR A 27 SHEET 7 AC 8 GLU B 61 LYS B 68 -1 O GLU B 62 N TRP B 28 SHEET 8 AC 8 GLU B 146 ASP B 154 -1 O LEU B 147 N ARG B 67 SHEET 1 AD 5 VAL A 105 ILE A 107 0 SHEET 2 AD 5 TYR A 97 ASN A 101 -1 O ALA A 98 N ILE A 107 SHEET 3 AD 5 GLU A 146 ASP A 154 -1 O GLU A 146 N ASN A 101 SHEET 4 AD 5 ARG A 93 LEU A 94 -1 O ARG A 93 N ASP A 154 SHEET 5 AD 5 ALA A 114 ASN A 115 -1 O ALA A 114 N LEU A 94 SHEET 1 BA 4 VAL B 6 VAL B 11 0 SHEET 2 BA 4 TYR B 158 LYS B 171 -1 O VAL B 167 N VAL B 11 SHEET 3 BA 4 ALA B 47 LEU B 54 -1 O LEU B 48 N ILE B 164 SHEET 4 BA 4 GLU B 31 ASN B 40 -1 O GLU B 31 N LYS B 53 SHEET 1 BB 5 VAL B 6 VAL B 11 0 SHEET 2 BB 5 TYR B 158 LYS B 171 -1 O VAL B 167 N VAL B 11 SHEET 3 BB 5 ILE B 77 PRO B 85 -1 O ILE B 77 N TYR B 170 SHEET 4 BB 5 LYS B 127 GLU B 137 -1 O ARG B 130 N ILE B 84 SHEET 5 BB 5 GLU B 120 PHE B 124 -1 O GLU B 120 N ARG B 131 LINK C MSE A -2 N ALA A -1 1555 1555 1.34 LINK C ASP A 110 N MSE A 111 1555 1555 1.34 LINK C MSE A 111 N ASN A 112 1555 1555 1.34 LINK C ASP B 110 N MSE B 111 1555 1555 1.34 LINK C MSE B 111 N ASN B 112 1555 1555 1.34 LINK O ASP A 12 CA CA A1174 1555 1555 2.32 LINK O GLY A 44 CA CA A1174 1555 1555 2.49 LINK O GLY A 46 CA CA A1174 1555 1555 2.31 LINK OD2 ASP A 165 CA CA A1174 1555 1555 2.56 LINK OD1 ASP A 165 CA CA A1174 1555 1555 2.55 LINK CA CA A1174 O HOH A2056 1555 1555 2.60 LINK CA CA A1174 O HOH A2148 1555 1555 2.41 LINK O ASP B 12 CA CA B1174 1555 1555 2.33 LINK O GLY B 44 CA CA B1174 1555 1555 2.51 LINK O GLY B 46 CA CA B1174 1555 1555 2.40 LINK OD2 ASP B 165 CA CA B1174 1555 1555 2.68 LINK OD1 ASP B 165 CA CA B1174 1555 1555 2.55 LINK CA CA B1174 O HOH B2048 1555 1555 2.64 LINK CA CA B1174 O HOH B2127 1555 1555 2.40 CISPEP 1 SER A 34 PRO A 35 0 -1.26 CISPEP 2 ASN A 101 PRO A 102 0 -5.37 CISPEP 3 SER B 34 PRO B 35 0 -2.23 CISPEP 4 ASN B 101 PRO B 102 0 -6.82 SITE 1 AC1 6 ASP A 12 GLY A 44 GLY A 46 ASP A 165 SITE 2 AC1 6 HOH A2056 HOH A2148 SITE 1 AC2 6 ASP B 12 GLY B 44 GLY B 46 ASP B 165 SITE 2 AC2 6 HOH B2048 HOH B2127 CRYST1 69.078 69.078 229.474 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014476 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004358 0.00000 HETATM 1 N MSE A -2 25.663 31.768 78.113 1.00 56.27 N HETATM 2 CA MSE A -2 24.879 32.579 77.140 1.00 56.19 C HETATM 3 C MSE A -2 23.380 32.345 77.360 1.00 54.07 C HETATM 4 O MSE A -2 22.923 31.192 77.363 1.00 54.00 O HETATM 5 CB MSE A -2 25.280 32.217 75.707 1.00 57.77 C HETATM 6 CG MSE A -2 24.836 33.230 74.644 1.00 63.54 C HETATM 7 SE MSE A -2 24.676 32.424 72.831 1.00 79.37 SE HETATM 8 CE MSE A -2 25.751 33.791 71.794 1.00 75.69 C