data_1OFX # _entry.id 1OFX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1OFX pdb_00001ofx 10.2210/pdb1ofx/pdb RCSB AHJ040 ? ? WWPDB D_1000175450 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OFX _pdbx_database_status.recvd_initial_deposition_date 1991-10-17 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Usman, N.' 2 'Zhang, S.' 3 'Rich, A.' 4 # _citation.id primary _citation.title 'Crystal structure of an Okazaki fragment at 2-A resolution.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 89 _citation.page_first 534 _citation.page_last 538 _citation.year 1992 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1370582 _citation.pdbx_database_id_DOI 10.1073/pnas.89.2.534 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Egli, M.' 1 ? primary 'Usman, N.' 2 ? primary 'Zhang, S.G.' 3 ? primary 'Rich, A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*GP*TP*AP*TP*AP*CP*GP*C)-3') ; 3085.029 1 ? ? ? ? 2 polymer syn ;DNA/RNA (5'-R(*GP*CP*GP*)-D(*TP*AP*TP*AP*CP*CP*C)-3') ; 3052.981 1 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 93 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DT)(DA)(DT)(DA)(DC)(DG)(DC)' GGGTATACGC A ? 2 'polydeoxyribonucleotide/polyribonucleotide hybrid' no no 'GCG(DT)(DA)(DT)(DA)(DC)(DC)(DC)' GCGTATACCC B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 SPERMINE SPM 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n 2 1 G n 2 2 C n 2 3 G n 2 4 DT n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DC n 2 9 DC n 2 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 2 1 G 1 11 11 G G B . n B 2 2 C 2 12 12 C C B . n B 2 3 G 3 13 13 G G B . n B 2 4 DT 4 14 14 DT T B . n B 2 5 DA 5 15 15 DA A B . n B 2 6 DT 6 16 16 DT T B . n B 2 7 DA 7 17 17 DA A B . n B 2 8 DC 8 18 18 DC C B . n B 2 9 DC 9 19 19 DC C B . n B 2 10 DC 10 20 20 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SPM 1 21 21 SPM SPM B . D 4 HOH 1 23 23 HOH HOH A . D 4 HOH 2 27 27 HOH HOH A . D 4 HOH 3 28 28 HOH HOH A . D 4 HOH 4 29 29 HOH HOH A . D 4 HOH 5 31 31 HOH HOH A . D 4 HOH 6 33 33 HOH HOH A . D 4 HOH 7 34 34 HOH HOH A . D 4 HOH 8 39 39 HOH HOH A . D 4 HOH 9 40 40 HOH HOH A . D 4 HOH 10 47 47 HOH HOH A . D 4 HOH 11 50 50 HOH HOH A . D 4 HOH 12 52 52 HOH HOH A . D 4 HOH 13 53 53 HOH HOH A . D 4 HOH 14 56 56 HOH HOH A . D 4 HOH 15 57 57 HOH HOH A . D 4 HOH 16 61 61 HOH HOH A . D 4 HOH 17 69 69 HOH HOH A . D 4 HOH 18 72 72 HOH HOH A . D 4 HOH 19 74 74 HOH HOH A . D 4 HOH 20 78 78 HOH HOH A . D 4 HOH 21 79 79 HOH HOH A . D 4 HOH 22 80 80 HOH HOH A . D 4 HOH 23 81 81 HOH HOH A . D 4 HOH 24 83 83 HOH HOH A . D 4 HOH 25 84 84 HOH HOH A . D 4 HOH 26 92 92 HOH HOH A . D 4 HOH 27 93 93 HOH HOH A . D 4 HOH 28 97 97 HOH HOH A . D 4 HOH 29 98 98 HOH HOH A . D 4 HOH 30 101 101 HOH HOH A . D 4 HOH 31 111 111 HOH HOH A . E 4 HOH 1 22 22 HOH HOH B . E 4 HOH 2 24 24 HOH HOH B . E 4 HOH 3 25 25 HOH HOH B . E 4 HOH 4 26 26 HOH HOH B . E 4 HOH 5 30 30 HOH HOH B . E 4 HOH 6 32 32 HOH HOH B . E 4 HOH 7 35 35 HOH HOH B . E 4 HOH 8 36 36 HOH HOH B . E 4 HOH 9 37 37 HOH HOH B . E 4 HOH 10 38 38 HOH HOH B . E 4 HOH 11 41 41 HOH HOH B . E 4 HOH 12 42 42 HOH HOH B . E 4 HOH 13 43 43 HOH HOH B . E 4 HOH 14 44 44 HOH HOH B . E 4 HOH 15 45 45 HOH HOH B . E 4 HOH 16 46 46 HOH HOH B . E 4 HOH 17 48 48 HOH HOH B . E 4 HOH 18 49 49 HOH HOH B . E 4 HOH 19 51 51 HOH HOH B . E 4 HOH 20 54 54 HOH HOH B . E 4 HOH 21 55 55 HOH HOH B . E 4 HOH 22 58 58 HOH HOH B . E 4 HOH 23 59 59 HOH HOH B . E 4 HOH 24 60 60 HOH HOH B . E 4 HOH 25 62 62 HOH HOH B . E 4 HOH 26 63 63 HOH HOH B . E 4 HOH 27 64 64 HOH HOH B . E 4 HOH 28 65 65 HOH HOH B . E 4 HOH 29 66 66 HOH HOH B . E 4 HOH 30 67 67 HOH HOH B . E 4 HOH 31 68 68 HOH HOH B . E 4 HOH 32 70 70 HOH HOH B . E 4 HOH 33 71 71 HOH HOH B . E 4 HOH 34 73 73 HOH HOH B . E 4 HOH 35 75 75 HOH HOH B . E 4 HOH 36 76 76 HOH HOH B . E 4 HOH 37 77 77 HOH HOH B . E 4 HOH 38 82 82 HOH HOH B . E 4 HOH 39 85 85 HOH HOH B . E 4 HOH 40 86 86 HOH HOH B . E 4 HOH 41 87 87 HOH HOH B . E 4 HOH 42 88 88 HOH HOH B . E 4 HOH 43 89 89 HOH HOH B . E 4 HOH 44 90 90 HOH HOH B . E 4 HOH 45 91 91 HOH HOH B . E 4 HOH 46 94 94 HOH HOH B . E 4 HOH 47 95 95 HOH HOH B . E 4 HOH 48 96 96 HOH HOH B . E 4 HOH 49 99 99 HOH HOH B . E 4 HOH 50 100 100 HOH HOH B . E 4 HOH 51 102 102 HOH HOH B . E 4 HOH 52 103 103 HOH HOH B . E 4 HOH 53 104 104 HOH HOH B . E 4 HOH 54 105 105 HOH HOH B . E 4 HOH 55 106 106 HOH HOH B . E 4 HOH 56 107 107 HOH HOH B . E 4 HOH 57 108 108 HOH HOH B . E 4 HOH 58 109 109 HOH HOH B . E 4 HOH 59 110 110 HOH HOH B . E 4 HOH 60 112 112 HOH HOH B . E 4 HOH 61 113 113 HOH HOH B . E 4 HOH 62 114 114 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PROLSQ refinement '(MODIFIED BY G.J.QUIGLEY)' ? 1 MODIFIED refinement 'BY G.J.QUIGLEY' ? 2 # _cell.entry_id 1OFX _cell.length_a 24.030 _cell.length_b 43.670 _cell.length_c 48.950 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OFX _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 1OFX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 41.21 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 291.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'NA CACODYLATE' ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 163.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1OFX _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low 10.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 1860 _reflns.number_all 3858 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1OFX _refine.ls_number_reflns_obs 1826 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1560000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 407 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 514 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 1OFX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1OFX _struct.title 'CRYSTAL STRUCTURE OF AN OKAZAKI FRAGMENT AT 2 ANGSTROMS RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OFX _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'A-DNA/RNA, DOUBLE HELIX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1OFX 1OFX ? ? ? 2 2 PDB 1OFX 1OFX ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OFX A 1 ? 10 ? 1OFX 1 ? 10 ? 1 10 2 2 1OFX B 1 ? 10 ? 1OFX 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 5 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B G 3 N1 ? ? A DC 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B G 3 O6 ? ? A DC 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B G 3 N2 ? ? A DC 8 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B C 2 N3 ? ? A DG 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B C 2 O2 ? ? A DG 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B C 2 N4 ? ? A DG 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B G 1 N1 ? ? A DC 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B G 1 O6 ? ? A DC 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B G 1 N2 ? ? A DC 10 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id SPM _struct_site.pdbx_auth_seq_id 21 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE SPM B 21' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DT A 4 ? DT A 4 . ? 2_565 ? 2 AC1 8 DG A 9 ? DG A 9 . ? 1_555 ? 3 AC1 8 DG A 9 ? DG A 9 . ? 4_556 ? 4 AC1 8 HOH D . ? HOH A 52 . ? 4_556 ? 5 AC1 8 HOH D . ? HOH A 97 . ? 1_555 ? 6 AC1 8 G B 3 ? G B 13 . ? 1_555 ? 7 AC1 8 DC B 10 ? DC B 20 . ? 3_645 ? 8 AC1 8 HOH E . ? HOH B 71 . ? 4_456 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 53 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 45 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_455 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A DG 1 ? ? "C1'" A DG 1 ? ? 1.606 1.519 0.087 0.010 N 2 1 C6 A DG 1 ? ? N1 A DG 1 ? ? 1.333 1.391 -0.058 0.007 N 3 1 C2 A DG 1 ? ? N2 A DG 1 ? ? 1.231 1.341 -0.110 0.010 N 4 1 "O3'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.360 1.419 -0.059 0.006 N 5 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.339 1.391 -0.052 0.007 N 6 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.229 1.341 -0.112 0.010 N 7 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.496 1.420 0.076 0.011 N 8 1 "O3'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.366 1.419 -0.053 0.006 N 9 1 C6 A DG 3 ? ? N1 A DG 3 ? ? 1.334 1.391 -0.057 0.007 N 10 1 C2 A DG 3 ? ? N2 A DG 3 ? ? 1.235 1.341 -0.106 0.010 N 11 1 "O3'" A DT 4 ? ? "C3'" A DT 4 ? ? 1.337 1.419 -0.082 0.006 N 12 1 C8 A DA 7 ? ? N9 A DA 7 ? ? 1.322 1.373 -0.051 0.008 N 13 1 "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? 1.556 1.512 0.044 0.007 N 14 1 N3 A DC 8 ? ? C4 A DC 8 ? ? 1.382 1.335 0.047 0.007 N 15 1 "O3'" A DG 9 ? ? "C3'" A DG 9 ? ? 1.363 1.419 -0.056 0.006 N 16 1 C6 A DG 9 ? ? N1 A DG 9 ? ? 1.336 1.391 -0.055 0.007 N 17 1 C2 A DG 9 ? ? N2 A DG 9 ? ? 1.225 1.341 -0.116 0.010 N 18 1 N3 A DC 10 ? ? C4 A DC 10 ? ? 1.386 1.335 0.051 0.007 N 19 1 "C2'" B G 11 ? ? "C1'" B G 11 ? ? 1.630 1.529 0.101 0.011 N 20 1 C6 B G 11 ? ? N1 B G 11 ? ? 1.335 1.391 -0.056 0.007 N 21 1 C2 B G 11 ? ? N2 B G 11 ? ? 1.232 1.341 -0.109 0.010 N 22 1 C6 B G 13 ? ? N1 B G 13 ? ? 1.334 1.391 -0.057 0.007 N 23 1 C2 B G 13 ? ? N2 B G 13 ? ? 1.233 1.341 -0.108 0.010 N 24 1 "C2'" B DT 14 ? ? "C1'" B DT 14 ? ? 1.598 1.519 0.079 0.010 N 25 1 P B DA 15 ? ? "O5'" B DA 15 ? ? 1.654 1.593 0.061 0.010 N 26 1 "O3'" B DA 15 ? ? "C3'" B DA 15 ? ? 1.376 1.419 -0.043 0.006 N 27 1 "C2'" B DT 16 ? ? "C1'" B DT 16 ? ? 1.593 1.519 0.074 0.010 N 28 1 "C2'" B DC 18 ? ? "C1'" B DC 18 ? ? 1.584 1.519 0.065 0.010 N 29 1 N3 B DC 18 ? ? C4 B DC 18 ? ? 1.386 1.335 0.051 0.007 N 30 1 "O3'" B DC 19 ? ? "C3'" B DC 19 ? ? 1.365 1.419 -0.054 0.006 N 31 1 N3 B DC 19 ? ? C4 B DC 19 ? ? 1.381 1.335 0.046 0.007 N 32 1 N3 B DC 20 ? ? C4 B DC 20 ? ? 1.378 1.335 0.043 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? "C2'" A DG 1 ? ? 99.50 105.90 -6.40 0.80 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.40 108.30 4.10 0.30 N 3 1 C6 A DG 1 ? ? N1 A DG 1 ? ? C2 A DG 1 ? ? 119.73 125.10 -5.37 0.60 N 4 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N3 A DG 1 ? ? 128.46 123.90 4.56 0.60 N 5 1 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 117.46 111.50 5.96 0.50 N 6 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N2 A DG 1 ? ? 122.95 116.20 6.75 0.90 N 7 1 N3 A DG 1 ? ? C2 A DG 1 ? ? N2 A DG 1 ? ? 108.60 119.90 -11.30 0.70 N 8 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 122.50 128.60 -6.10 0.60 N 9 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 97.28 105.70 -8.42 0.90 N 10 1 P A DG 2 ? ? "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? 109.01 120.90 -11.89 1.60 N 11 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 102.09 104.50 -2.41 0.40 N 12 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.98 108.30 4.68 0.30 N 13 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.73 125.10 -6.37 0.60 N 14 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 128.55 123.90 4.65 0.60 N 15 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 117.97 111.50 6.47 0.50 N 16 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 111.03 119.90 -8.87 0.70 N 17 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.91 128.60 -4.69 0.60 N 18 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DG 3 ? ? 129.36 119.70 9.66 1.20 Y 19 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 100.18 105.70 -5.52 0.90 N 20 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 100.02 104.50 -4.48 0.40 N 21 1 "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 97.17 102.40 -5.23 0.80 N 22 1 C6 A DG 3 ? ? N1 A DG 3 ? ? C2 A DG 3 ? ? 118.72 125.10 -6.38 0.60 N 23 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N3 A DG 3 ? ? 129.94 123.90 6.04 0.60 N 24 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 117.16 111.50 5.66 0.50 N 25 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 110.95 119.90 -8.95 0.70 N 26 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 124.64 128.60 -3.96 0.60 N 27 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP2 A DT 4 ? ? 96.62 105.70 -9.08 0.90 N 28 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 100.09 104.50 -4.41 0.40 N 29 1 "C3'" A DT 4 ? ? "C2'" A DT 4 ? ? "C1'" A DT 4 ? ? 94.71 102.40 -7.69 0.80 N 30 1 "O5'" A DA 5 ? ? P A DA 5 ? ? OP1 A DA 5 ? ? 99.22 105.70 -6.48 0.90 N 31 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 113.09 108.30 4.79 0.30 N 32 1 "O5'" A DT 6 ? ? P A DT 6 ? ? OP1 A DT 6 ? ? 98.29 105.70 -7.41 0.90 N 33 1 "O5'" A DT 6 ? ? "C5'" A DT 6 ? ? "C4'" A DT 6 ? ? 103.37 109.40 -6.03 0.80 N 34 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 115.01 108.30 6.71 0.30 N 35 1 C4 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 122.80 119.00 3.80 0.60 N 36 1 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.03 122.90 -4.87 0.60 N 37 1 "O5'" A DA 7 ? ? P A DA 7 ? ? OP1 A DA 7 ? ? 98.31 105.70 -7.39 0.90 N 38 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 115.23 108.30 6.93 0.30 N 39 1 "O5'" A DC 8 ? ? "C5'" A DC 8 ? ? "C4'" A DC 8 ? ? 101.25 109.40 -8.15 0.80 N 40 1 "O4'" A DC 8 ? ? "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? 100.38 104.50 -4.12 0.40 N 41 1 C2 A DC 8 ? ? N3 A DC 8 ? ? C4 A DC 8 ? ? 124.54 119.90 4.64 0.50 N 42 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 117.23 121.90 -4.67 0.40 N 43 1 C5 A DC 8 ? ? C6 A DC 8 ? ? N1 A DC 8 ? ? 124.33 121.00 3.33 0.50 N 44 1 N1 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 124.81 118.90 5.91 0.60 N 45 1 C5 A DC 8 ? ? C4 A DC 8 ? ? N4 A DC 8 ? ? 125.03 120.20 4.83 0.70 N 46 1 "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? "C3'" A DG 9 ? ? 99.52 104.50 -4.98 0.40 N 47 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 113.21 108.30 4.91 0.30 N 48 1 C6 A DG 9 ? ? N1 A DG 9 ? ? C2 A DG 9 ? ? 118.91 125.10 -6.19 0.60 N 49 1 N1 A DG 9 ? ? C2 A DG 9 ? ? N3 A DG 9 ? ? 129.68 123.90 5.78 0.60 N 50 1 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 116.93 111.50 5.43 0.50 N 51 1 N3 A DG 9 ? ? C2 A DG 9 ? ? N2 A DG 9 ? ? 110.20 119.90 -9.70 0.70 N 52 1 C5 A DG 9 ? ? C6 A DG 9 ? ? O6 A DG 9 ? ? 123.86 128.60 -4.74 0.60 N 53 1 "O5'" A DC 10 ? ? P A DC 10 ? ? OP1 A DC 10 ? ? 98.45 105.70 -7.25 0.90 N 54 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.48 108.30 3.18 0.30 N 55 1 C2 A DC 10 ? ? N3 A DC 10 ? ? C4 A DC 10 ? ? 124.16 119.90 4.26 0.50 N 56 1 N3 A DC 10 ? ? C4 A DC 10 ? ? C5 A DC 10 ? ? 116.71 121.90 -5.19 0.40 N 57 1 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 123.57 118.90 4.67 0.60 N 58 1 C5 A DC 10 ? ? C4 A DC 10 ? ? N4 A DC 10 ? ? 125.48 120.20 5.28 0.70 N 59 1 "C4'" B G 11 ? ? "C3'" B G 11 ? ? "C2'" B G 11 ? ? 95.37 102.60 -7.23 1.00 N 60 1 N9 B G 11 ? ? "C1'" B G 11 ? ? "C2'" B G 11 ? ? 102.25 112.00 -9.75 1.10 N 61 1 "O4'" B G 11 ? ? "C1'" B G 11 ? ? N9 B G 11 ? ? 122.96 108.50 14.46 0.70 N 62 1 C6 B G 11 ? ? N1 B G 11 ? ? C2 B G 11 ? ? 118.87 125.10 -6.23 0.60 N 63 1 N1 B G 11 ? ? C2 B G 11 ? ? N3 B G 11 ? ? 128.94 123.90 5.04 0.60 N 64 1 C5 B G 11 ? ? C6 B G 11 ? ? N1 B G 11 ? ? 117.91 111.50 6.41 0.50 N 65 1 N3 B G 11 ? ? C2 B G 11 ? ? N2 B G 11 ? ? 109.66 119.90 -10.24 0.70 N 66 1 C5 B G 11 ? ? C6 B G 11 ? ? O6 B G 11 ? ? 122.42 128.60 -6.18 0.60 N 67 1 "O5'" B C 12 ? ? P B C 12 ? ? OP1 B C 12 ? ? 97.73 105.70 -7.97 0.90 N 68 1 C2 B C 12 ? ? N3 B C 12 ? ? C4 B C 12 ? ? 124.63 119.90 4.73 0.50 N 69 1 N3 B C 12 ? ? C4 B C 12 ? ? C5 B C 12 ? ? 117.32 121.90 -4.58 0.40 N 70 1 N1 B C 12 ? ? C2 B C 12 ? ? O2 B C 12 ? ? 125.14 118.90 6.24 0.60 N 71 1 "O5'" B G 13 ? ? P B G 13 ? ? OP1 B G 13 ? ? 99.13 105.70 -6.57 0.90 N 72 1 N9 B G 13 ? ? "C1'" B G 13 ? ? "C2'" B G 13 ? ? 105.21 112.00 -6.79 1.10 N 73 1 C6 B G 13 ? ? N1 B G 13 ? ? C2 B G 13 ? ? 118.96 125.10 -6.14 0.60 N 74 1 N1 B G 13 ? ? C2 B G 13 ? ? N3 B G 13 ? ? 129.55 123.90 5.65 0.60 N 75 1 C5 B G 13 ? ? C6 B G 13 ? ? N1 B G 13 ? ? 117.69 111.50 6.19 0.50 N 76 1 N3 B G 13 ? ? C2 B G 13 ? ? N2 B G 13 ? ? 109.38 119.90 -10.52 0.70 N 77 1 C5 B G 13 ? ? C6 B G 13 ? ? O6 B G 13 ? ? 122.38 128.60 -6.22 0.60 N 78 1 "O5'" B DT 14 ? ? P B DT 14 ? ? OP1 B DT 14 ? ? 96.61 105.70 -9.09 0.90 N 79 1 "O4'" B DT 14 ? ? "C4'" B DT 14 ? ? "C3'" B DT 14 ? ? 101.18 104.50 -3.32 0.40 N 80 1 "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? "O4'" B DT 14 ? ? 116.70 109.80 6.90 1.10 N 81 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 112.43 108.30 4.13 0.30 N 82 1 N3 B DT 14 ? ? C2 B DT 14 ? ? O2 B DT 14 ? ? 117.31 122.30 -4.99 0.60 N 83 1 "O5'" B DA 15 ? ? P B DA 15 ? ? OP1 B DA 15 ? ? 100.13 105.70 -5.57 0.90 N 84 1 "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? "C3'" B DA 15 ? ? 101.61 104.50 -2.89 0.40 N 85 1 "O4'" B DA 15 ? ? "C1'" B DA 15 ? ? N9 B DA 15 ? ? 110.92 108.30 2.62 0.30 N 86 1 "O5'" B DT 16 ? ? P B DT 16 ? ? OP1 B DT 16 ? ? 97.89 105.70 -7.81 0.90 N 87 1 "O5'" B DT 16 ? ? P B DT 16 ? ? OP2 B DT 16 ? ? 118.11 110.70 7.41 1.20 N 88 1 P B DT 16 ? ? "O5'" B DT 16 ? ? "C5'" B DT 16 ? ? 108.45 120.90 -12.45 1.60 N 89 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 112.95 108.30 4.65 0.30 N 90 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 97.45 105.70 -8.25 0.90 N 91 1 "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 103.93 109.40 -5.47 0.80 N 92 1 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 108.89 120.90 -12.01 1.60 N 93 1 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 100.82 104.50 -3.68 0.40 N 94 1 "O5'" B DC 18 ? ? P B DC 18 ? ? OP1 B DC 18 ? ? 95.69 105.70 -10.01 0.90 N 95 1 P B DC 18 ? ? "O5'" B DC 18 ? ? "C5'" B DC 18 ? ? 111.28 120.90 -9.62 1.60 N 96 1 "O4'" B DC 18 ? ? "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? 101.68 104.50 -2.82 0.40 N 97 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.58 108.30 2.28 0.30 N 98 1 C2 B DC 18 ? ? N3 B DC 18 ? ? C4 B DC 18 ? ? 124.19 119.90 4.29 0.50 N 99 1 N3 B DC 18 ? ? C4 B DC 18 ? ? C5 B DC 18 ? ? 116.92 121.90 -4.98 0.40 N 100 1 N1 B DC 18 ? ? C2 B DC 18 ? ? O2 B DC 18 ? ? 124.90 118.90 6.00 0.60 N 101 1 C5 B DC 18 ? ? C4 B DC 18 ? ? N4 B DC 18 ? ? 124.75 120.20 4.55 0.70 N 102 1 "O5'" B DC 19 ? ? P B DC 19 ? ? OP2 B DC 19 ? ? 97.84 105.70 -7.86 0.90 N 103 1 "O5'" B DC 19 ? ? "C5'" B DC 19 ? ? "C4'" B DC 19 ? ? 102.71 109.40 -6.69 0.80 N 104 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 112.27 108.30 3.97 0.30 N 105 1 C2 B DC 19 ? ? N3 B DC 19 ? ? C4 B DC 19 ? ? 124.48 119.90 4.58 0.50 N 106 1 N3 B DC 19 ? ? C4 B DC 19 ? ? C5 B DC 19 ? ? 116.95 121.90 -4.95 0.40 N 107 1 C5 B DC 19 ? ? C6 B DC 19 ? ? N1 B DC 19 ? ? 124.83 121.00 3.83 0.50 N 108 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 125.31 118.90 6.41 0.60 N 109 1 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 117.52 121.90 -4.38 0.70 N 110 1 C5 B DC 19 ? ? C4 B DC 19 ? ? N4 B DC 19 ? ? 126.43 120.20 6.23 0.70 N 111 1 "C3'" B DC 19 ? ? "O3'" B DC 19 ? ? P B DC 20 ? ? 129.64 119.70 9.94 1.20 Y 112 1 "O5'" B DC 20 ? ? P B DC 20 ? ? OP2 B DC 20 ? ? 98.47 105.70 -7.23 0.90 N 113 1 C2 B DC 20 ? ? N3 B DC 20 ? ? C4 B DC 20 ? ? 124.35 119.90 4.45 0.50 N 114 1 N3 B DC 20 ? ? C4 B DC 20 ? ? C5 B DC 20 ? ? 117.71 121.90 -4.19 0.40 N 115 1 N1 B DC 20 ? ? C2 B DC 20 ? ? O2 B DC 20 ? ? 124.93 118.90 6.03 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TF isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TF isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 DA OP3 O N N 36 DA P P N N 37 DA OP1 O N N 38 DA OP2 O N N 39 DA "O5'" O N N 40 DA "C5'" C N N 41 DA "C4'" C N R 42 DA "O4'" O N N 43 DA "C3'" C N S 44 DA "O3'" O N N 45 DA "C2'" C N N 46 DA "C1'" C N R 47 DA N9 N Y N 48 DA C8 C Y N 49 DA N7 N Y N 50 DA C5 C Y N 51 DA C6 C Y N 52 DA N6 N N N 53 DA N1 N Y N 54 DA C2 C Y N 55 DA N3 N Y N 56 DA C4 C Y N 57 DA HOP3 H N N 58 DA HOP2 H N N 59 DA "H5'" H N N 60 DA "H5''" H N N 61 DA "H4'" H N N 62 DA "H3'" H N N 63 DA "HO3'" H N N 64 DA "H2'" H N N 65 DA "H2''" H N N 66 DA "H1'" H N N 67 DA H8 H N N 68 DA H61 H N N 69 DA H62 H N N 70 DA H2 H N N 71 DC OP3 O N N 72 DC P P N N 73 DC OP1 O N N 74 DC OP2 O N N 75 DC "O5'" O N N 76 DC "C5'" C N N 77 DC "C4'" C N R 78 DC "O4'" O N N 79 DC "C3'" C N S 80 DC "O3'" O N N 81 DC "C2'" C N N 82 DC "C1'" C N R 83 DC N1 N N N 84 DC C2 C N N 85 DC O2 O N N 86 DC N3 N N N 87 DC C4 C N N 88 DC N4 N N N 89 DC C5 C N N 90 DC C6 C N N 91 DC HOP3 H N N 92 DC HOP2 H N N 93 DC "H5'" H N N 94 DC "H5''" H N N 95 DC "H4'" H N N 96 DC "H3'" H N N 97 DC "HO3'" H N N 98 DC "H2'" H N N 99 DC "H2''" H N N 100 DC "H1'" H N N 101 DC H41 H N N 102 DC H42 H N N 103 DC H5 H N N 104 DC H6 H N N 105 DG OP3 O N N 106 DG P P N N 107 DG OP1 O N N 108 DG OP2 O N N 109 DG "O5'" O N N 110 DG "C5'" C N N 111 DG "C4'" C N R 112 DG "O4'" O N N 113 DG "C3'" C N S 114 DG "O3'" O N N 115 DG "C2'" C N N 116 DG "C1'" C N R 117 DG N9 N Y N 118 DG C8 C Y N 119 DG N7 N Y N 120 DG C5 C Y N 121 DG C6 C N N 122 DG O6 O N N 123 DG N1 N N N 124 DG C2 C N N 125 DG N2 N N N 126 DG N3 N N N 127 DG C4 C Y N 128 DG HOP3 H N N 129 DG HOP2 H N N 130 DG "H5'" H N N 131 DG "H5''" H N N 132 DG "H4'" H N N 133 DG "H3'" H N N 134 DG "HO3'" H N N 135 DG "H2'" H N N 136 DG "H2''" H N N 137 DG "H1'" H N N 138 DG H8 H N N 139 DG H1 H N N 140 DG H21 H N N 141 DG H22 H N N 142 DT OP3 O N N 143 DT P P N N 144 DT OP1 O N N 145 DT OP2 O N N 146 DT "O5'" O N N 147 DT "C5'" C N N 148 DT "C4'" C N R 149 DT "O4'" O N N 150 DT "C3'" C N S 151 DT "O3'" O N N 152 DT "C2'" C N N 153 DT "C1'" C N R 154 DT N1 N N N 155 DT C2 C N N 156 DT O2 O N N 157 DT N3 N N N 158 DT C4 C N N 159 DT O4 O N N 160 DT C5 C N N 161 DT C7 C N N 162 DT C6 C N N 163 DT HOP3 H N N 164 DT HOP2 H N N 165 DT "H5'" H N N 166 DT "H5''" H N N 167 DT "H4'" H N N 168 DT "H3'" H N N 169 DT "HO3'" H N N 170 DT "H2'" H N N 171 DT "H2''" H N N 172 DT "H1'" H N N 173 DT H3 H N N 174 DT H71 H N N 175 DT H72 H N N 176 DT H73 H N N 177 DT H6 H N N 178 G OP3 O N N 179 G P P N N 180 G OP1 O N N 181 G OP2 O N N 182 G "O5'" O N N 183 G "C5'" C N N 184 G "C4'" C N R 185 G "O4'" O N N 186 G "C3'" C N S 187 G "O3'" O N N 188 G "C2'" C N R 189 G "O2'" O N N 190 G "C1'" C N R 191 G N9 N Y N 192 G C8 C Y N 193 G N7 N Y N 194 G C5 C Y N 195 G C6 C N N 196 G O6 O N N 197 G N1 N N N 198 G C2 C N N 199 G N2 N N N 200 G N3 N N N 201 G C4 C Y N 202 G HOP3 H N N 203 G HOP2 H N N 204 G "H5'" H N N 205 G "H5''" H N N 206 G "H4'" H N N 207 G "H3'" H N N 208 G "HO3'" H N N 209 G "H2'" H N N 210 G "HO2'" H N N 211 G "H1'" H N N 212 G H8 H N N 213 G H1 H N N 214 G H21 H N N 215 G H22 H N N 216 HOH O O N N 217 HOH H1 H N N 218 HOH H2 H N N 219 SPM N1 N N N 220 SPM C2 C N N 221 SPM C3 C N N 222 SPM C4 C N N 223 SPM N5 N N N 224 SPM C6 C N N 225 SPM C7 C N N 226 SPM C8 C N N 227 SPM C9 C N N 228 SPM N10 N N N 229 SPM C11 C N N 230 SPM C12 C N N 231 SPM C13 C N N 232 SPM N14 N N N 233 SPM HN11 H N N 234 SPM HN12 H N N 235 SPM H21 H N N 236 SPM H22 H N N 237 SPM H31 H N N 238 SPM H32 H N N 239 SPM H41 H N N 240 SPM H42 H N N 241 SPM HN5 H N N 242 SPM H61 H N N 243 SPM H62 H N N 244 SPM H71 H N N 245 SPM H72 H N N 246 SPM H81 H N N 247 SPM H82 H N N 248 SPM H91 H N N 249 SPM H92 H N N 250 SPM HN0 H N N 251 SPM H111 H N N 252 SPM H112 H N N 253 SPM H121 H N N 254 SPM H122 H N N 255 SPM H131 H N N 256 SPM H132 H N N 257 SPM HN41 H N N 258 SPM HN42 H N N 259 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 DA OP3 P sing N N 37 DA OP3 HOP3 sing N N 38 DA P OP1 doub N N 39 DA P OP2 sing N N 40 DA P "O5'" sing N N 41 DA OP2 HOP2 sing N N 42 DA "O5'" "C5'" sing N N 43 DA "C5'" "C4'" sing N N 44 DA "C5'" "H5'" sing N N 45 DA "C5'" "H5''" sing N N 46 DA "C4'" "O4'" sing N N 47 DA "C4'" "C3'" sing N N 48 DA "C4'" "H4'" sing N N 49 DA "O4'" "C1'" sing N N 50 DA "C3'" "O3'" sing N N 51 DA "C3'" "C2'" sing N N 52 DA "C3'" "H3'" sing N N 53 DA "O3'" "HO3'" sing N N 54 DA "C2'" "C1'" sing N N 55 DA "C2'" "H2'" sing N N 56 DA "C2'" "H2''" sing N N 57 DA "C1'" N9 sing N N 58 DA "C1'" "H1'" sing N N 59 DA N9 C8 sing Y N 60 DA N9 C4 sing Y N 61 DA C8 N7 doub Y N 62 DA C8 H8 sing N N 63 DA N7 C5 sing Y N 64 DA C5 C6 sing Y N 65 DA C5 C4 doub Y N 66 DA C6 N6 sing N N 67 DA C6 N1 doub Y N 68 DA N6 H61 sing N N 69 DA N6 H62 sing N N 70 DA N1 C2 sing Y N 71 DA C2 N3 doub Y N 72 DA C2 H2 sing N N 73 DA N3 C4 sing Y N 74 DC OP3 P sing N N 75 DC OP3 HOP3 sing N N 76 DC P OP1 doub N N 77 DC P OP2 sing N N 78 DC P "O5'" sing N N 79 DC OP2 HOP2 sing N N 80 DC "O5'" "C5'" sing N N 81 DC "C5'" "C4'" sing N N 82 DC "C5'" "H5'" sing N N 83 DC "C5'" "H5''" sing N N 84 DC "C4'" "O4'" sing N N 85 DC "C4'" "C3'" sing N N 86 DC "C4'" "H4'" sing N N 87 DC "O4'" "C1'" sing N N 88 DC "C3'" "O3'" sing N N 89 DC "C3'" "C2'" sing N N 90 DC "C3'" "H3'" sing N N 91 DC "O3'" "HO3'" sing N N 92 DC "C2'" "C1'" sing N N 93 DC "C2'" "H2'" sing N N 94 DC "C2'" "H2''" sing N N 95 DC "C1'" N1 sing N N 96 DC "C1'" "H1'" sing N N 97 DC N1 C2 sing N N 98 DC N1 C6 sing N N 99 DC C2 O2 doub N N 100 DC C2 N3 sing N N 101 DC N3 C4 doub N N 102 DC C4 N4 sing N N 103 DC C4 C5 sing N N 104 DC N4 H41 sing N N 105 DC N4 H42 sing N N 106 DC C5 C6 doub N N 107 DC C5 H5 sing N N 108 DC C6 H6 sing N N 109 DG OP3 P sing N N 110 DG OP3 HOP3 sing N N 111 DG P OP1 doub N N 112 DG P OP2 sing N N 113 DG P "O5'" sing N N 114 DG OP2 HOP2 sing N N 115 DG "O5'" "C5'" sing N N 116 DG "C5'" "C4'" sing N N 117 DG "C5'" "H5'" sing N N 118 DG "C5'" "H5''" sing N N 119 DG "C4'" "O4'" sing N N 120 DG "C4'" "C3'" sing N N 121 DG "C4'" "H4'" sing N N 122 DG "O4'" "C1'" sing N N 123 DG "C3'" "O3'" sing N N 124 DG "C3'" "C2'" sing N N 125 DG "C3'" "H3'" sing N N 126 DG "O3'" "HO3'" sing N N 127 DG "C2'" "C1'" sing N N 128 DG "C2'" "H2'" sing N N 129 DG "C2'" "H2''" sing N N 130 DG "C1'" N9 sing N N 131 DG "C1'" "H1'" sing N N 132 DG N9 C8 sing Y N 133 DG N9 C4 sing Y N 134 DG C8 N7 doub Y N 135 DG C8 H8 sing N N 136 DG N7 C5 sing Y N 137 DG C5 C6 sing N N 138 DG C5 C4 doub Y N 139 DG C6 O6 doub N N 140 DG C6 N1 sing N N 141 DG N1 C2 sing N N 142 DG N1 H1 sing N N 143 DG C2 N2 sing N N 144 DG C2 N3 doub N N 145 DG N2 H21 sing N N 146 DG N2 H22 sing N N 147 DG N3 C4 sing N N 148 DT OP3 P sing N N 149 DT OP3 HOP3 sing N N 150 DT P OP1 doub N N 151 DT P OP2 sing N N 152 DT P "O5'" sing N N 153 DT OP2 HOP2 sing N N 154 DT "O5'" "C5'" sing N N 155 DT "C5'" "C4'" sing N N 156 DT "C5'" "H5'" sing N N 157 DT "C5'" "H5''" sing N N 158 DT "C4'" "O4'" sing N N 159 DT "C4'" "C3'" sing N N 160 DT "C4'" "H4'" sing N N 161 DT "O4'" "C1'" sing N N 162 DT "C3'" "O3'" sing N N 163 DT "C3'" "C2'" sing N N 164 DT "C3'" "H3'" sing N N 165 DT "O3'" "HO3'" sing N N 166 DT "C2'" "C1'" sing N N 167 DT "C2'" "H2'" sing N N 168 DT "C2'" "H2''" sing N N 169 DT "C1'" N1 sing N N 170 DT "C1'" "H1'" sing N N 171 DT N1 C2 sing N N 172 DT N1 C6 sing N N 173 DT C2 O2 doub N N 174 DT C2 N3 sing N N 175 DT N3 C4 sing N N 176 DT N3 H3 sing N N 177 DT C4 O4 doub N N 178 DT C4 C5 sing N N 179 DT C5 C7 sing N N 180 DT C5 C6 doub N N 181 DT C7 H71 sing N N 182 DT C7 H72 sing N N 183 DT C7 H73 sing N N 184 DT C6 H6 sing N N 185 G OP3 P sing N N 186 G OP3 HOP3 sing N N 187 G P OP1 doub N N 188 G P OP2 sing N N 189 G P "O5'" sing N N 190 G OP2 HOP2 sing N N 191 G "O5'" "C5'" sing N N 192 G "C5'" "C4'" sing N N 193 G "C5'" "H5'" sing N N 194 G "C5'" "H5''" sing N N 195 G "C4'" "O4'" sing N N 196 G "C4'" "C3'" sing N N 197 G "C4'" "H4'" sing N N 198 G "O4'" "C1'" sing N N 199 G "C3'" "O3'" sing N N 200 G "C3'" "C2'" sing N N 201 G "C3'" "H3'" sing N N 202 G "O3'" "HO3'" sing N N 203 G "C2'" "O2'" sing N N 204 G "C2'" "C1'" sing N N 205 G "C2'" "H2'" sing N N 206 G "O2'" "HO2'" sing N N 207 G "C1'" N9 sing N N 208 G "C1'" "H1'" sing N N 209 G N9 C8 sing Y N 210 G N9 C4 sing Y N 211 G C8 N7 doub Y N 212 G C8 H8 sing N N 213 G N7 C5 sing Y N 214 G C5 C6 sing N N 215 G C5 C4 doub Y N 216 G C6 O6 doub N N 217 G C6 N1 sing N N 218 G N1 C2 sing N N 219 G N1 H1 sing N N 220 G C2 N2 sing N N 221 G C2 N3 doub N N 222 G N2 H21 sing N N 223 G N2 H22 sing N N 224 G N3 C4 sing N N 225 HOH O H1 sing N N 226 HOH O H2 sing N N 227 SPM N1 C2 sing N N 228 SPM N1 HN11 sing N N 229 SPM N1 HN12 sing N N 230 SPM C2 C3 sing N N 231 SPM C2 H21 sing N N 232 SPM C2 H22 sing N N 233 SPM C3 C4 sing N N 234 SPM C3 H31 sing N N 235 SPM C3 H32 sing N N 236 SPM C4 N5 sing N N 237 SPM C4 H41 sing N N 238 SPM C4 H42 sing N N 239 SPM N5 C6 sing N N 240 SPM N5 HN5 sing N N 241 SPM C6 C7 sing N N 242 SPM C6 H61 sing N N 243 SPM C6 H62 sing N N 244 SPM C7 C8 sing N N 245 SPM C7 H71 sing N N 246 SPM C7 H72 sing N N 247 SPM C8 C9 sing N N 248 SPM C8 H81 sing N N 249 SPM C8 H82 sing N N 250 SPM C9 N10 sing N N 251 SPM C9 H91 sing N N 252 SPM C9 H92 sing N N 253 SPM N10 C11 sing N N 254 SPM N10 HN0 sing N N 255 SPM C11 C12 sing N N 256 SPM C11 H111 sing N N 257 SPM C11 H112 sing N N 258 SPM C12 C13 sing N N 259 SPM C12 H121 sing N N 260 SPM C12 H122 sing N N 261 SPM C13 N14 sing N N 262 SPM C13 H131 sing N N 263 SPM C13 H132 sing N N 264 SPM N14 HN41 sing N N 265 SPM N14 HN42 sing N N 266 # _ndb_struct_conf_na.entry_id 1OFX _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.453 -0.291 0.437 -1.814 -5.369 -2.475 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 0.181 -0.096 -0.110 -8.692 -10.160 1.747 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 0.400 -0.064 -0.261 -11.098 -18.635 1.522 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -1.027 -0.255 0.093 8.210 -8.942 -0.811 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 -0.636 -0.120 -0.028 2.196 -14.551 4.726 5 A_DA5:DT16_B A 5 ? B 16 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.829 -0.079 0.135 6.429 -20.938 9.304 6 A_DT6:DA15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 -0.075 -0.147 0.430 13.022 -20.614 1.808 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B G 3 1_555 -0.090 -0.141 -0.409 17.950 -14.354 0.066 8 A_DC8:G13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B C 2 1_555 -1.252 -0.706 -0.377 -5.048 -14.834 -2.469 9 A_DG9:C12_B A 9 ? B 12 ? 19 1 1 A DC 10 1_555 B G 1 1_555 -0.945 -0.208 -0.231 -3.966 10.135 -1.214 10 A_DC10:G11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DG 2 1_555 B DC 9 1_555 0.626 -2.277 3.486 3.531 5.792 38.766 -4.088 -0.500 3.170 8.645 -5.271 39.332 1 AA_DG1DG2:DC19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.549 -1.601 3.298 3.104 7.416 34.055 -3.729 1.360 2.838 12.448 -5.211 34.964 2 AA_DG2DG3:DC18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.374 -1.298 2.892 -3.315 2.634 21.265 -4.358 -0.149 2.738 7.049 8.871 21.678 3 AA_DG3DT4:DA17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B DT 6 1_555 0.443 -1.216 3.234 0.967 22.612 30.032 -4.505 -0.578 1.904 37.647 -1.610 37.448 4 AA_DT4DA5:DT16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 0.488 -1.079 3.339 0.274 6.614 28.670 -3.523 -0.904 3.024 13.137 -0.544 29.409 5 AA_DA5DT6:DA15DT16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DT 6 1_555 B DA 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.105 -1.243 2.896 -4.595 15.798 33.659 -3.630 -0.327 2.120 25.479 7.412 37.360 6 AA_DT6DA7:DT14DA15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B G 3 1_555 -0.365 -1.644 3.360 3.383 2.826 28.326 -3.957 1.499 3.121 5.730 -6.860 28.660 7 AA_DA7DC8:G13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B G 3 1_555 A DG 9 1_555 B C 2 1_555 -0.089 -1.215 3.706 1.203 14.667 28.672 -4.949 0.387 2.768 27.452 -2.251 32.157 8 AA_DC8DG9:C12G13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B C 2 1_555 A DC 10 1_555 B G 1 1_555 0.704 -1.354 3.778 -0.820 1.315 33.098 -2.628 -1.393 3.704 2.307 1.439 33.133 9 AA_DG9DC10:G11C12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 1OFX _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.041615 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022899 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020429 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_